Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
870844
2
Nilearn
509013
3
ITK-SNAP
415004
4
FCP/INDI PRIVATE SITE
290107
5
1000 Functional Connectomes Project
172412
6
IIT Human Brain Atlas (v.5.0)
155400
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
150358
9
DTI-TK
88756
10
BrainNet Viewer
86664
11
fMRI-CPCA
72754
12
IBSR
71892
13
Multi-Modal MRI Reproducibility Resource
60993
14
WFU_PickAtlas
59971
15
BioImage Suite
58258
16
BIDScoin
49837
17
age-ility
49806
18
BXH/XCEDE Tools
45676
19
PANDA: a pipeline tool for diffusion MRI
42105
20
Solar Eclipse Imaging Genetics tools
41050
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
40470
22
EEGLAB
39734
23
JIST: Java Image Science Toolkit
39538
24
The Neuro Bureau
39442
25
FreeSurfer
37846
26
TOADS-CRUISE Brain Segmentation Tools
36291
27
GIFTI
36191
28
fNIRS Data Analysis Environment
33860
29
Functional Imaging BIRN
33655
30
Generalized PPI Toolbox
31234
31
NITRC Computational Environment (NITRC-CE)
29727
32
3T DWI test-retest reliability dataset
29723
33
NIDB - Neuroinformatics Database
28494
34
BrainMap Database
26009
35
Homer2
23754
36
NeuroDebian
22068
37
Network-Based Statistic (NBS)
21943
38
Anima
21659
39
BrainVisa Morphologist extensions
21115
40
NYU CSC TestRetest
20287
41
UNC 0-1-2 Infant Atlases
19102
42
XNAT Extras
18006
43
Mango
17638
44
MITK Diffusion
17304
45
Neuroimaging Made Easy Blog
16237
46
Automatic Registration Toolbox
15889
47
QuickNII - Serial section aligner to volumetric atlases
15874
48
Brain Biomechanics Imaging Resources
15822
49
GRETNA
15460
50
Data Format Tools
15108
51
Surf Ice
14862
52
3D Slicer
14694
53
Talairach Daemon
14204
54
Diffusion Toolkit / TrackVis
14124
55
Spatially Constrained Parcellation
14061
56
Vaa3D and Vaa3D-Neuron
14041
57
Melbourne Subcortex Atlas
13945
58
Freesurfer fsaverage
13920
59
Brainstorm
13574
60
CBS High-Res Brain Processing Tools
13351
61
DCP：Diffusion Connectome Pipeline
13211
62
SRI24 Atlas: Normal Adult Brain Anatomy
13130
63
Group ICA Toolbox (GIFT and EEGIFT)
12853
64
dcm2nii
12642
65
libminc - Medical Image NetCDF library
12568
66
MRtrix
12397
67
BrainMask Volume Processing Tool
12358
68
Computational Morphometry Toolkit (CMTK)
12240
69
3DSlicerLupusLesionModule
11789
70
FSL
11735
71
CANDI Neuroimaging Access Point
11611
72
Artifact Detection Tools (ART)
11463
73
BrainSuite
11450
74
DWI/DTI Quality Control Tool: DTIPrep
11361
75
Human Imaging Database (HID)
11318
76
Subject Order-Independent Group ICA
11219
77
TumorSim
11105
78
BrainVISA
10925
79
2008 MICCAI MS Lesion Segmentation Challenge
10863
80
Hammer And WML Modules for 3D Slicer
10796
81
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10579
82
NeuroImaging Analysis Kit (NIAK)
10399
83
Multimodal Visual Consciousness Study Dataset
10280
84
BrainFlow
10247
85
4D UNC Neonatal and Infant Cortical Surface Atlases
10156
86
NODDI Matlab Toolbox
9974
87
SPM for fNIRS toolbox
9887
88
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9862
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9744
90
Source Information Flow Toolbox
9743
91
Diffusional Kurtosis Estimator
9697
92
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9451
93
NIfTI
9409
94
ENIGMA-DTI pipeline
9407
95
Task Independent Fluctuations Discussion
9090
96
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9059
97
Awake Rat rsfMRI Database
8956
98
MARS (Multi-Atlas Robust Segmentation)
8810
99
SPHARM-PDM Toolbox
8636
100
Robust Brain Extraction (ROBEX)
8439