Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871223
2
Nilearn
512118
3
ITK-SNAP
416593
4
FCP/INDI PRIVATE SITE
291673
5
1000 Functional Connectomes Project
172585
6
IIT Human Brain Atlas (v.5.0)
157386
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
150572
9
DTI-TK
88819
10
BrainNet Viewer
87006
11
BIDScoin
83337
12
fMRI-CPCA
73068
13
IBSR
71951
14
Multi-Modal MRI Reproducibility Resource
61378
15
WFU_PickAtlas
60029
16
BioImage Suite
58534
17
age-ility
50557
18
BXH/XCEDE Tools
46531
19
PANDA: a pipeline tool for diffusion MRI
42328
20
Solar Eclipse Imaging Genetics tools
41658
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
40896
22
JIST: Java Image Science Toolkit
39991
23
EEGLAB
39780
24
The Neuro Bureau
39456
25
FreeSurfer
37846
26
GIFTI
36499
27
TOADS-CRUISE Brain Segmentation Tools
36367
28
fNIRS Data Analysis Environment
34395
29
Functional Imaging BIRN
33969
30
Generalized PPI Toolbox
31343
31
NIDB - Neuroinformatics Database
30804
32
3T DWI test-retest reliability dataset
30370
33
NITRC Computational Environment (NITRC-CE)
30224
34
BrainMap Database
26299
35
Homer2
23775
36
NeuroDebian
22223
37
Anima
22028
38
Network-Based Statistic (NBS)
21976
39
BrainVisa Morphologist extensions
21318
40
NYU CSC TestRetest
20328
41
UNC 0-1-2 Infant Atlases
19338
42
XNAT Extras
18233
43
Mango
17726
44
MITK Diffusion
17331
45
Neuroimaging Made Easy Blog
16318
46
QuickNII - Serial section aligner to volumetric atlases
16073
47
Brain Biomechanics Imaging Resources
15994
48
Automatic Registration Toolbox
15950
49
GRETNA
15461
50
Data Format Tools
15286
51
Surf Ice
14862
52
3D Slicer
14795
53
Diffusion Toolkit / TrackVis
14407
54
Talairach Daemon
14284
55
Vaa3D and Vaa3D-Neuron
14249
56
Spatially Constrained Parcellation
14151
57
Melbourne Subcortex Atlas
14018
58
Freesurfer fsaverage
13949
59
CBS High-Res Brain Processing Tools
13588
60
Brainstorm
13574
61
DCP：Diffusion Connectome Pipeline
13221
62
SRI24 Atlas: Normal Adult Brain Anatomy
13210
63
Group ICA Toolbox (GIFT and EEGIFT)
12898
64
dcm2nii
12642
65
libminc - Medical Image NetCDF library
12568
66
BrainFlow
12518
67
BrainMask Volume Processing Tool
12512
68
MRtrix
12453
69
Computational Morphometry Toolkit (CMTK)
12240
70
3DSlicerLupusLesionModule
12062
71
FSL
12061
72
CANDI Neuroimaging Access Point
11722
73
Multimodal Visual Consciousness Study Dataset
11645
74
BrainSuite
11638
75
DWI/DTI Quality Control Tool: DTIPrep
11556
76
Human Imaging Database (HID)
11500
77
Artifact Detection Tools (ART)
11499
78
Subject Order-Independent Group ICA
11272
79
TumorSim
11261
80
BrainVISA
11069
81
Hammer And WML Modules for 3D Slicer
10889
82
2008 MICCAI MS Lesion Segmentation Challenge
10863
83
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10598
84
NeuroImaging Analysis Kit (NIAK)
10526
85
4D UNC Neonatal and Infant Cortical Surface Atlases
10278
86
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
10177
87
NODDI Matlab Toolbox
9974
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9922
89
SPM for fNIRS toolbox
9920
90
Source Information Flow Toolbox
9812
91
Diffusional Kurtosis Estimator
9718
92
ENIGMA-DTI pipeline
9632
93
NIfTI
9540
94
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9465
95
Awake Rat rsfMRI Database
9198
96
Task Independent Fluctuations Discussion
9176
97
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9085
98
MARS (Multi-Atlas Robust Segmentation)
9021
99
SPHARM-PDM Toolbox
8765
100
Robust Brain Extraction (ROBEX)
8439