Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
871015
2
Nilearn
509988
3
ITK-SNAP
415412
4
FCP/INDI PRIVATE SITE
290601
5
1000 Functional Connectomes Project
172462
6
IIT Human Brain Atlas (v.5.0)
155893
7
MRIcroGL
153338
8
CONN : functional connectivity toolbox
150439
9
DTI-TK
88781
10
BrainNet Viewer
86779
11
fMRI-CPCA
72811
12
IBSR
71912
13
BIDScoin
62871
14
Multi-Modal MRI Reproducibility Resource
61143
15
WFU_PickAtlas
59992
16
BioImage Suite
58345
17
age-ility
50209
18
BXH/XCEDE Tools
46060
19
PANDA: a pipeline tool for diffusion MRI
42195
20
Solar Eclipse Imaging Genetics tools
41222
21
Waxholm Space Atlas of the Sprague Dawley Rat Brain
40594
22
EEGLAB
39753
23
JIST: Java Image Science Toolkit
39696
24
The Neuro Bureau
39446
25
FreeSurfer
37846
26
TOADS-CRUISE Brain Segmentation Tools
36327
27
GIFTI
36281
28
fNIRS Data Analysis Environment
34077
29
Functional Imaging BIRN
33781
30
Generalized PPI Toolbox
31272
31
3T DWI test-retest reliability dataset
29945
32
NITRC Computational Environment (NITRC-CE)
29888
33
NIDB - Neuroinformatics Database
29220
34
BrainMap Database
26094
35
Homer2
23764
36
NeuroDebian
22143
37
Network-Based Statistic (NBS)
21952
38
Anima
21799
39
BrainVisa Morphologist extensions
21198
40
NYU CSC TestRetest
20305
41
UNC 0-1-2 Infant Atlases
19175
42
XNAT Extras
18077
43
Mango
17680
44
MITK Diffusion
17312
45
Neuroimaging Made Easy Blog
16271
46
QuickNII - Serial section aligner to volumetric atlases
15935
47
Automatic Registration Toolbox
15913
48
Brain Biomechanics Imaging Resources
15903
49
GRETNA
15460
50
Data Format Tools
15193
51
Surf Ice
14862
52
3D Slicer
14743
53
Diffusion Toolkit / TrackVis
14229
54
Talairach Daemon
14228
55
Vaa3D and Vaa3D-Neuron
14112
56
Spatially Constrained Parcellation
14094
57
Melbourne Subcortex Atlas
13972
58
Freesurfer fsaverage
13926
59
Brainstorm
13574
60
CBS High-Res Brain Processing Tools
13427
61
DCP：Diffusion Connectome Pipeline
13215
62
SRI24 Atlas: Normal Adult Brain Anatomy
13162
63
Group ICA Toolbox (GIFT and EEGIFT)
12868
64
dcm2nii
12642
65
libminc - Medical Image NetCDF library
12568
66
MRtrix
12425
67
BrainMask Volume Processing Tool
12392
68
Computational Morphometry Toolkit (CMTK)
12240
69
FSL
11881
70
3DSlicerLupusLesionModule
11857
71
CANDI Neuroimaging Access Point
11664
72
BrainSuite
11524
73
Artifact Detection Tools (ART)
11477
74
DWI/DTI Quality Control Tool: DTIPrep
11419
75
Human Imaging Database (HID)
11388
76
BrainFlow
11325
77
Subject Order-Independent Group ICA
11238
78
TumorSim
11177
79
BrainVISA
10976
80
2008 MICCAI MS Lesion Segmentation Challenge
10863
81
Hammer And WML Modules for 3D Slicer
10821
82
Multimodal Visual Consciousness Study Dataset
10779
83
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10587
84
NeuroImaging Analysis Kit (NIAK)
10428
85
4D UNC Neonatal and Infant Cortical Surface Atlases
10190
86
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9975
87
NODDI Matlab Toolbox
9974
88
SPM for fNIRS toolbox
9901
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9799
90
Source Information Flow Toolbox
9779
91
Diffusional Kurtosis Estimator
9705
92
ENIGMA-DTI pipeline
9489
93
NIfTI
9477
94
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9456
95
Task Independent Fluctuations Discussion
9116
96
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
9073
97
Awake Rat rsfMRI Database
9042
98
MARS (Multi-Atlas Robust Segmentation)
8890
99
SPHARM-PDM Toolbox
8690
100
Robust Brain Extraction (ROBEX)
8439