NITRC: DIAMOND: PubMed Mentions: Display Document

PubMed Mentions

The links below are to publications on PubMed referring to DIAMOND. This list is gathered weekly from PubMed automatically and was last updated on October 20, 2025.

Publication/References
Stability-Indicating HPLC Method for Simultaneous Determination of Chloramphenicol, Dexamethasone Sodium Phosphate and Tetrahydrozoline Hydrochloride in Ophthalmic Solution. Description: AlAani, Hashem, et al. Stability-Indicating HPLC Method for Simultaneous Determination of Chloramphenicol, Dexamethasone Sodium Phosphate and Tetrahydrozoline Hydrochloride in Ophthalmic Solution. ''Adv Pharm Bull''. 2016 Mar; '''6''' (1):137-41
Predicting anxiety from wholebrain activity patterns to emotional faces in young adults: a machine learning approach. Description: Portugal, Liana C L, et al. Predicting anxiety from wholebrain activity patterns to emotional faces in young adults: a machine learning approach. ''Neuroimage Clin''. 2019; '''23''': 101813
Comparative genome analysis provides novel insight into the interaction of Aquimarina sp. AD1, BL5 and AD10 with their macroalgal host. Description: Hudson, Jennifer, et al. Comparative genome analysis provides novel insight into the interaction of Aquimarina sp. AD1, BL5 and AD10 with their macroalgal host. ''Mar Genomics''. 2019 Aug; '''46''': 8-15
Comparing the treatment effect of narrow spectrum antimicrobial, probiotic and fluid with amoxicillin in mink kits (Neovison vison) with pre-weaning diarrhea. Description: Birch, Julie Melsted, et al. Comparing the treatment effect of narrow spectrum antimicrobial, probiotic and fluid with amoxicillin in mink kits (Neovison vison) with pre-weaning diarrhea. ''Res Vet Sci''. 2019 Aug; '''125''': 121-129
High-throughput sequencing reveals no viral pathogens in eight cases of ocular adnexal extranodal marginal zone B-cell lymphoma. Description: Mollerup, Sarah, et al. High-throughput sequencing reveals no viral pathogens in eight cases of ocular adnexal extranodal marginal zone B-cell lymphoma. ''Exp Eye Res''. 2019 Aug; '''185''': 107677
Gut microbiota adaptation to high altitude in indigenous animals. Description: Ma, Yan, et al. Gut microbiota adaptation to high altitude in indigenous animals. ''Biochem Biophys Res Commun''. 2019 Aug 13; '''516''' (1):120-126
Uncovering the cellular and humoral immune responses of Antheraea pernyi hemolymph to Antheraea pernyi nucleopolyhedrovirus infection by transcriptome analysis. Description: Wang, Guobao, et al. Uncovering the cellular and humoral immune responses of Antheraea pernyi hemolymph to Antheraea pernyi nucleopolyhedrovirus infection by transcriptome analysis. ''J Invertebr Pathol''. 2019 Sep; '''166''': 107205
Identification of a novel orally bioavailable ERK5 inhibitor with selectivity over p38alpha and BRD4. Description: Myers, Stephanie M, et al. Identification of a novel orally bioavailable ERK5 inhibitor with selectivity over p38alpha and BRD4. ''Eur J Med Chem''. 2019 Sep 15; '''178''': 530-543
De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome - identification of stress response and detoxification transcripts. Description: Armstrong, Emily K, et al. De Novo assembly and characterisation of the greentail prawn (Metapenaeus bennettae) hepatopancreas transcriptome - identification of stress response and detoxification transcripts. ''Mar Genomics''. 2019 Oct; '''47''': 100677
Microbial Metabolism Modulates Antibiotic Susceptibility within the Murine Gut Microbiome. Description: Cabral, Damien J, et al. Microbial Metabolism Modulates Antibiotic Susceptibility within the Murine Gut Microbiome. ''Cell Metab''. 2019 Oct 1; '''30''' (4):800-823.e7
The mycovirome of a fungal collection from the sea cucumber Holothuria polii. Description: Nerva, L, et al. The mycovirome of a fungal collection from the sea cucumber Holothuria polii. ''Virus Res''. 2019 Nov; '''273''': 197737
Complete genome sequencing of Shigella sp. PAMC 28760: Identification of CAZyme genes and analysis of their potential role in glycogen metabolism for cold survival adaptation. Description: Han, So-Ra, et al. Complete genome sequencing of Shigella sp. PAMC 28760: Identification of CAZyme genes and analysis of their potential role in glycogen metabolism for cold survival adaptation. ''Microb Pathog''. 2019 Dec; '''137''': 103759
Genomic analysis of a lignocellulose degrading strain from the underexplored genus Meridianimaribacter. Description: Lam, Ming Quan, et al. Genomic analysis of a lignocellulose degrading strain from the underexplored genus Meridianimaribacter. ''Genomics''. 2020 Jan; '''112''' (1):952-960
Whole genome sequencing and genome annotation of the wild edible mushroom, Russula griseocarnosa. Description: Yu, Fei, et al. Whole genome sequencing and genome annotation of the wild edible mushroom, Russula griseocarnosa. ''Genomics''. 2020 Jan; '''112''' (1):603-614
Development of novel nanoantibiotics using an outer membrane vesicle-based drug efflux mechanism. Description: Huang, Weiwei, et al. Development of novel nanoantibiotics using an outer membrane vesicle-based drug efflux mechanism. ''J Control Release''. 2020 Jan 10; '''317''': 1-22
The metabolic pathway of sphingolipids biosynthesis and signaling in Entamoeba histolytica. Description: Avila-Garcia, Ricardo, et al. The metabolic pathway of sphingolipids biosynthesis and signaling in Entamoeba histolytica. ''Biochem Biophys Res Commun''. 2020 Feb 12; '''522''' (3):574-579
Structural and kinetic characterization of Trypanosoma congolense pyruvate kinase. Description: Pinto Torres, Joar Esteban, et al. Structural and kinetic characterization of Trypanosoma congolense pyruvate kinase. ''Mol Biochem Parasitol''. 2020 Mar; '''236''': 111263
Marine Sediments Illuminate Chlamydiae Diversity and Evolution. Description: Dharamshi, Jennah E, et al. Marine Sediments Illuminate Chlamydiae Diversity and Evolution. ''Curr Biol''. 2020 Mar 23; '''30''' (6):1032-1048.e7
Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults. Description: Westreich, Samuel T, et al. Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults. ''J Nutr Biochem''. 2020 May; '''79''': 108340
Transcriptome analyses suggest a molecular mechanism for the SIPC response of Amphibalanus amphitrite. Description: Zhang, Xinkang, et al. Transcriptome analyses suggest a molecular mechanism for the SIPC response of Amphibalanus amphitrite. ''Biochem Biophys Res Commun''. 2020 May 14; '''525''' (4):823-829
Parallel Evolution in the Integration of a Co-obligate Aphid Symbiosis. Description: Monnin, David, et al. Parallel Evolution in the Integration of a Co-obligate Aphid Symbiosis. ''Curr Biol''. 2020 May 18; '''30''' (10):1949-1957.e6
Physiological and transcriptomic analysis of 'Whangkeumbae' pear core browning during low-temperature storage. Description: Zhou, Hongsheng, et al. Physiological and transcriptomic analysis of 'Whangkeumbae' pear core browning during low-temperature storage. ''Gene Expr Patterns''. 2020 Jun; '''36''': 119113
Deep DNA metagenomic sequencing reveals oral microbiome divergence between monozygotic twins discordant for multiple sclerosis severity. Description: Boullerne, Anne I, et al. Deep DNA metagenomic sequencing reveals oral microbiome divergence between monozygotic twins discordant for multiple sclerosis severity. ''J Neuroimmunol''. 2020 Jun 15; '''343''': 577237
Genome and secretome analysis of jute endophyte Grammothele lineata strain SDL-CO-2015-1: Insights into its lignocellulolytic structure and secondary metabolite profile. Description: Ehsan, Tasneem, et al. Genome and secretome analysis of jute endophyte Grammothele lineata strain SDL-CO-2015-1: Insights into its lignocellulolytic structure and secondary metabolite profile. ''Genomics''. 2020 Jul; '''112''' (4):2794-2803
Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12. Description: Salwan, Richa, et al. Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12. ''Genomics''. 2020 Jul; '''112''' (4):2894-2902
NGS-based characterization of microbial diversity and functional profiling of solid tannery waste metagenomes. Description: Verma, Sumit Kumar, et al. NGS-based characterization of microbial diversity and functional profiling of solid tannery waste metagenomes. ''Genomics''. 2020 Jul; '''112''' (4):2903-2913
Analysis of DNA methylation differences in gonads of the large yellow croaker. Description: He, Amei, et al. Analysis of DNA methylation differences in gonads of the large yellow croaker. ''Gene''. 2020 Jul 30; '''749''': 144754
iTRAQ-based quantitative proteomic analysis of Colletotrichum lini reveals ethanol induced mechanism for enhancing dihydroxylation efficiency of DHEA. Description: Li, Hui, et al. iTRAQ-based quantitative proteomic analysis of Colletotrichum lini reveals ethanol induced mechanism for enhancing dihydroxylation efficiency of DHEA. ''J Proteomics''. 2020 Jul 30; '''224''': 103851
Identification of Conserved Gene-Regulatory Networks that Integrate Environmental Sensing and Growth in the Root Cambium. Description: Hoang, Nam V, et al. Identification of Conserved Gene-Regulatory Networks that Integrate Environmental Sensing and Growth in the Root Cambium. ''Curr Biol''. 2020 Aug 3; '''30''' (15):2887-2900.e7
Polymorphs and pharmacokinetics of an antipsychotic drug candidate. Description: Hao, Chao, et al. Polymorphs and pharmacokinetics of an antipsychotic drug candidate. ''Int J Pharm''. 2020 Aug 30; '''586''': 119600
A complex virome including two distinct emaraviruses associated with virus-like symptoms in Camellia japonica. Description: Peracchio, C, et al. A complex virome including two distinct emaraviruses associated with virus-like symptoms in Camellia japonica. ''Virus Res''. 2020 Sep; '''286''': 197964
Metabolic mechanisms of Coilia nasus in the natural food intake state during migration. Description: Yin, Denghua, et al. Metabolic mechanisms of Coilia nasus in the natural food intake state during migration. ''Genomics''. 2020 Sep; '''112''' (5):3294-3305
Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. Description: Jia, Na, et al. Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. ''Cell''. 2020 Sep 3; '''182''' (5):1328-1340.e13
Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions. Description: Hryckowian, Andrew J, et al. Bacteroides thetaiotaomicron-Infecting Bacteriophage Isolates Inform Sequence-Based Host Range Predictions. ''Cell Host Microbe''. 2020 Sep 9; '''28''' (3):371-379.e5
Large losses of ammonium-nitrogen from a rice ecosystem under elevated CO(2). Description: Xu, Chenchao, et al. Large losses of ammonium-nitrogen from a rice ecosystem under elevated CO(2). ''Sci Adv''. 2020 Oct; '''6''' (42):
Metagenomics approach the intestinal microbiome structure and function in the anti-H1N1 of a traditional chinese medicine acid polysaccharide. Description: Xiaoting, Lin, et al. Metagenomics approach the intestinal microbiome structure and function in the anti-H1N1 of a traditional chinese medicine acid polysaccharide. ''Microb Pathog''. 2020 Oct; '''147''': 104351
Transcriptome analysis of the Larimichthys polyactis under heat and cold stress. Description: Chu, Tianqi, et al. Transcriptome analysis of the Larimichthys polyactis under heat and cold stress. ''Cryobiology''. 2020 Oct; '''96''': 175-183
Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. Description: Ning, Lipeng, et al. Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. ''Neuroimage''. 2020 Nov 1; '''221''': 117128
Quantitative microbiome profiling links microbial community variation to the intestine regeneration rate of the sea cucumber Apostichopus japonicus. Description: Zhang, Hongxia, et al. Quantitative microbiome profiling links microbial community variation to the intestine regeneration rate of the sea cucumber Apostichopus japonicus. ''Genomics''. 2020 Nov; '''112''' (6):5012-5020
Integrative analysis of wood biomass and developing xylem transcriptome provide insights into mechanisms of lignin biosynthesis in wood formation of Pinus massoniana. Description: Ni, Zhouxian, et al. Integrative analysis of wood biomass and developing xylem transcriptome provide insights into mechanisms of lignin biosynthesis in wood formation of Pinus massoniana. ''Int J Biol Macromol''. 2020 Nov 15; '''163''': 1926-1937
New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals. Description: Tikhonenkov, Denis V, et al. New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals. ''Curr Biol''. 2020 Nov 16; '''30''' (22):4500-4509.e5
Comparative transcriptome analysis of eyestalk from the white shrimp Litopenaeus vannamei after the injection of dopamine. Description: Wei, Cun, et al. Comparative transcriptome analysis of eyestalk from the white shrimp Litopenaeus vannamei after the injection of dopamine. ''Gene''. 2020 Dec 30; '''763''': 145115
Behavioral and molecular response of the insect parasitic nematode Steinernema carpocapsae to cues emitted by a host, the red palm weevil, Rhynchophorus ferrugineus. Description: Santhi, Velayudhan Satheeja, et al. Behavioral and molecular response of the insect parasitic nematode Steinernema carpocapsae to cues emitted by a host, the red palm weevil, Rhynchophorus ferrugineus. ''Mol Biochem Parasitol''. 2021 Jan; '''241''': 111345
Chromosome-scale assembly of the yellow mealworm genome. Description: Eleftheriou, Evangelia, et al. Chromosome-scale assembly of the yellow mealworm genome. ''Open Res Eur''. 2021; '''1''': 94
Draft genomes of Perkinsus olseni and Perkinsus chesapeaki reveal polyploidy and regional differences in heterozygosity. Description: Bogema, Daniel R, et al. Draft genomes of Perkinsus olseni and Perkinsus chesapeaki reveal polyploidy and regional differences in heterozygosity. ''Genomics''. 2021 Jan; '''113''' (1 Pt 2):677-688
Functional metagenomic landscape of polluted river reveals potential genes involved in degradation of xenobiotic pollutants. Description: Yadav, Rakeshkumar, et al. Functional metagenomic landscape of polluted river reveals potential genes involved in degradation of xenobiotic pollutants. ''Environ Res''. 2021 Jan; '''192''': 110332
Genome analysis reveals probiotic propensities of Paenibacillus polymyxa HK4. Description: Soni, Riteshri, et al. Genome analysis reveals probiotic propensities of Paenibacillus polymyxa HK4. ''Genomics''. 2021 Jan; '''113''' (1 Pt 2):861-873
Precision targeting of bacterial pathogen via bi-functional nanozyme activated by biofilm microenvironment. Description: Huang, Yue, et al. Precision targeting of bacterial pathogen via bi-functional nanozyme activated by biofilm microenvironment. ''Biomaterials''. 2021 Jan; '''268''': 120581
Reducing the cell lysis to enhance yield of acid-stable alpha amylase by deletion of multiple peptidoglycan hydrolase-related genes in Bacillus amyloliquefaciens. Description: Zhang, Jinfang, et al. Reducing the cell lysis to enhance yield of acid-stable alpha amylase by deletion of multiple peptidoglycan hydrolase-related genes in Bacillus amyloliquefaciens. ''Int J Biol Macromol''. 2021 Jan 15; '''167''': 777-786
Virome characterization of Cryphonectria parasitica isolates from Azerbaijan unveiled a new mymonavirus and a putative new RNA virus unrelated to described viral sequences. Description: Forgia, M, et al. Virome characterization of Cryphonectria parasitica isolates from Azerbaijan unveiled a new mymonavirus and a putative new RNA virus unrelated to described viral sequences. ''Virology''. 2021 Jan 15; '''553''': 51-61
Transcriptome assisted label free proteomics of hepatic tissue in response to both dietary restriction and compensatory growth in cattle. Description: Mullins, Yvonne, et al. Transcriptome assisted label free proteomics of hepatic tissue in response to both dietary restriction and compensatory growth in cattle. ''J Proteomics''. 2021 Feb 10; '''232''': 104048
New insights into the effect of ethanol and volatile fatty acids proportions on methanogenic activities and pathways. Description: Du, Jin, et al. New insights into the effect of ethanol and volatile fatty acids proportions on methanogenic activities and pathways. ''Environ Res''. 2021 Mar; '''194''': 110644
Role of dietary fiber in the recovery of the human gut microbiome and its metabolome. Description: Tanes, Ceylan, et al. Role of dietary fiber in the recovery of the human gut microbiome and its metabolome. ''Cell Host Microbe''. 2021 Mar 10; '''29''' (3):394-407.e5
Molecular cloning, characterization, and expression analysis of a sex-biased transcriptional factor sox9 gene of mud crab Scylla paramamosain. Description: Wan, Haifu, et al. Molecular cloning, characterization, and expression analysis of a sex-biased transcriptional factor sox9 gene of mud crab Scylla paramamosain. ''Gene''. 2021 Mar 30; '''774''': 145423
Secretomic insight into the biomass hydrolysis potential of the phytopathogenic fungus Chrysoporthe cubensis. Description: Tavares, Murillo Peterlini, et al. Secretomic insight into the biomass hydrolysis potential of the phytopathogenic fungus Chrysoporthe cubensis. ''J Proteomics''. 2021 Mar 30; '''236''': 104121
A metagenomic assessment of microbial communities in anaerobic bioreactors and sediments: Taxonomic and functional relationships. Description: Beraud-Martinez, Liov Karel, et al. A metagenomic assessment of microbial communities in anaerobic bioreactors and sediments: Taxonomic and functional relationships. ''Anaerobe''. 2021 Apr; '''68''': 102296
Genotoxicity, oxidative stress, and biochemical biomarkers of exposure to green synthesized cadmium nanoparticles in Oreochromis niloticus (L.). Description: Ibrahim, Ahmed Th A, et al. Genotoxicity, oxidative stress, and biochemical biomarkers of exposure to green synthesized cadmium nanoparticles in Oreochromis niloticus (L.). ''Comp Biochem Physiol C Toxicol Pharmacol''. 2021 Apr; '''242''': 108942
An insight into the anticancer potential of carbamates and thiocarbamates of 10-demethoxy-10-methylaminocolchicine. Description: Krzywik, Julia, et al. An insight into the anticancer potential of carbamates and thiocarbamates of 10-demethoxy-10-methylaminocolchicine. ''Eur J Med Chem''. 2021 Apr 5; '''215''': 113282
Comparative genomics analysis of two banana Fusarium wilt biocontrol endophytes Bacillus subtilis R31 and TR21 provides insights into their differences on phytobeneficial trait. Description: Li, Chunji, et al. Comparative genomics analysis of two banana Fusarium wilt biocontrol endophytes Bacillus subtilis R31 and TR21 provides insights into their differences on phytobeneficial trait. ''Genomics''. 2021 May; '''113''' (3):900-909
Comparative transcriptome analyses for metribuzin tolerance provide insights into key genes and mechanisms restoring photosynthetic efficiency in bread wheat (Triticum aestivum L.). Description: Bhoite, Roopali, et al. Comparative transcriptome analyses for metribuzin tolerance provide insights into key genes and mechanisms restoring photosynthetic efficiency in bread wheat (Triticum aestivum L.). ''Genomics''. 2021 May; '''113''' (3):910-918
Cotton transcriptome analysis reveals novel biological pathways that eliminate reactive oxygen species (ROS) under sodium bicarbonate (NaHCO(3)) alkaline stress. Description: Fan, Yapeng, et al. Cotton transcriptome analysis reveals novel biological pathways that eliminate reactive oxygen species (ROS) under sodium bicarbonate (NaHCO(3)) alkaline stress. ''Genomics''. 2021 May; '''113''' (3):1157-1169
High-quality reference genome for Clonorchis sinensis. Description: Young, Neil D, et al. High-quality reference genome for Clonorchis sinensis. ''Genomics''. 2021 May; '''113''' (3):1605-1615
Molecular detection of cosaviruses in a patient with acute flaccid paralysis and in sewage samples in Germany. Description: Schneider, J, et al. Molecular detection of cosaviruses in a patient with acute flaccid paralysis and in sewage samples in Germany. ''Virus Res''. 2021 May; '''297''': 198285
Shotgun metagenomics reveals significant gut microbiome features in different grades of acute pancreatitis. Description: Yu, Shanshan, et al. Shotgun metagenomics reveals significant gut microbiome features in different grades of acute pancreatitis. ''Microb Pathog''. 2021 May; '''154''': 104849
Strongly preserved modules between cancer tissue and cell line contribute to drug resistance analysis across multiple cancer types. Description: Dong, Siyao, et al. Strongly preserved modules between cancer tissue and cell line contribute to drug resistance analysis across multiple cancer types. ''Genomics''. 2021 May; '''113''' (3):1026-1036
The macronuclear genome of anaerobic ciliate Entodinium caudatum reveals its biological features adapted to the distinct rumen environment. Description: Park, Tansol, et al. The macronuclear genome of anaerobic ciliate Entodinium caudatum reveals its biological features adapted to the distinct rumen environment. ''Genomics''. 2021 May; '''113''' (3):1416-1427
Gut microbiota in healthy and unhealthy long-living people. Description: Zhang, Siyuan, et al. Gut microbiota in healthy and unhealthy long-living people. ''Gene''. 2021 May 5; '''779''': 145510
Database-independent de novo metaproteomics of complex microbial communities. Description: Kleikamp, Hugo B C, et al. Database-independent de novo metaproteomics of complex microbial communities. ''Cell Syst''. 2021 May 19; '''12''' (5):375-383.e5
A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism. Description: Wang, Yinzhao, et al. A methylotrophic origin of methanogenesis and early divergence of anaerobic multicarbon alkane metabolism. ''Sci Adv''. 2021 Jul; '''7''' (27):
Probiotics Lactobacillus rhamnosus GG ATCC53103 and Lactobacillus plantarum JL01 induce cytokine alterations by the production of TCDA, DHA, and succinic and palmitic acids, and enhance immunity of weaned piglets. Description: Geng, Tingting, et al. Probiotics Lactobacillus rhamnosus GG ATCC53103 and Lactobacillus plantarum JL01 induce cytokine alterations by the production of TCDA, DHA, and succinic and palmitic acids, and enhance immunity of weaned piglets. ''Res Vet Sci''. 2021 Jul; '''137''': 56-67
Transcriptome landscapes of multiple tissues highlight the genes involved in the flavor metabolic pathway in Chinese chive (Allium tuberosum). Description: Liu, Ning, et al. Transcriptome landscapes of multiple tissues highlight the genes involved in the flavor metabolic pathway in Chinese chive (Allium tuberosum). ''Genomics''. 2021 Jul; '''113''' (4):2145-2157
Viscoelastically tunable substrates elucidate the interface-relaxation-dependent adhesion and assembly behaviors of epithelial cells. Description: Chang, Alice Chinghsuan, et al. Viscoelastically tunable substrates elucidate the interface-relaxation-dependent adhesion and assembly behaviors of epithelial cells. ''Biomaterials''. 2021 Jul; '''274''': 120861
Whole genome analysis of Aichivirus A, isolated from a child, suffering from gastroenteritis, in Pakistan. Description: Sadiq, Asma, et al. Whole genome analysis of Aichivirus A, isolated from a child, suffering from gastroenteritis, in Pakistan. ''Virus Res''. 2021 Jul 2; '''299''': 198437
De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression. Description: Berger, Cory A, et al. De novo transcriptome assembly of the Southern Ocean copepod Rhincalanus gigas sheds light on developmental changes in gene expression. ''Mar Genomics''. 2021 Aug; '''58''': 100835
The roles of borderline personality disorder symptoms and dispositional capability for suicide in suicidal ideation and suicide attempts: Examination of the COMT Val158Met polymorphism. Description: Tull, Matthew T, et al. The roles of borderline personality disorder symptoms and dispositional capability for suicide in suicidal ideation and suicide attempts: Examination of the COMT Val158Met polymorphism. ''Psychiatry Res''. 2021 Aug; '''302''': 114011
Next generation sequencing of near-full length genome of norovirus GII.4 from Botswana. Description: Makhaola, Kgomotso, et al. Next generation sequencing of near-full length genome of norovirus GII.4 from Botswana. ''Virus Res''. 2021 Sep; '''302''': 198491
Sialovirome of Brazilian tropical anophelines. Description: da Silva Neves, Nilvanei Aparecido, et al. Sialovirome of Brazilian tropical anophelines. ''Virus Res''. 2021 Sep; '''302''': 198494
Alterations in the Gut Virome in Obesity and Type 2 Diabetes Mellitus. Description: Yang, Keli, et al. Alterations in the Gut Virome in Obesity and Type 2 Diabetes Mellitus. ''Gastroenterology''. 2021 Oct; '''161''' (4):1257-1269.e13
A metatranscriptomic analysis of changing dynamics in the plankton communities adjacent to aquaculture leases in southern Tasmania, Australia. Description: Hook, Sharon E, et al. A metatranscriptomic analysis of changing dynamics in the plankton communities adjacent to aquaculture leases in southern Tasmania, Australia. ''Mar Genomics''. 2021 Oct; '''59''': 100858
Organic carbon quantity and quality jointly triggered the switch between dissimilatory nitrate reduction to ammonium (DNRA) and denitrification in biofilters. Description: Sun, Feng, et al. Organic carbon quantity and quality jointly triggered the switch between dissimilatory nitrate reduction to ammonium (DNRA) and denitrification in biofilters. ''Chemosphere''. 2021 Oct; '''280''': 130917
Synthesis and evaluation of new mixed "2 + 1" Re, (99m)Tc and (186)Re tricarbonyl dithiocarbamate complexes with different monodentate ligands. Description: Shegani, Antonio, et al. Synthesis and evaluation of new mixed "2 + 1" Re, (99m)Tc and (186)Re tricarbonyl dithiocarbamate complexes with different monodentate ligands. ''Bioorg Med Chem''. 2021 Oct 1; '''47''': 116373
A 2-(benzothiazol-2-yl)-phenolato platinum(II) complex as potential photosensitizer for combating bacterial infections in lung cancer chemotherapydagger. Description: Ortega, Enrique, et al. A 2-(benzothiazol-2-yl)-phenolato platinum(II) complex as potential photosensitizer for combating bacterial infections in lung cancer chemotherapydagger. ''Eur J Med Chem''. 2021 Oct 15; '''222''': 113600
Safety Assessment of Lactiplantibacillus (formerly Lactobacillus) plantarum Q180. Description: Kwon, Yoo Jin, et al. Safety Assessment of Lactiplantibacillus (formerly Lactobacillus) plantarum Q180. ''J Microbiol Biotechnol''. 2021 Oct 28; '''31''' (10):1420-1429
Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis. Description: Li, Henghui, et al. Elevated colonic microbiota-associated paucimannosidic and truncated N-glycans in pediatric ulcerative colitis. ''J Proteomics''. 2021 Oct 30; '''249''': 104369
A genome guided evaluation of the Lab4 probiotic consortium. Description: Baker, L M, et al. A genome guided evaluation of the Lab4 probiotic consortium. ''Genomics''. 2021 Nov; '''113''' (6):4028-4038
Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. Description: Zarski, Daniel, et al. Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish. ''Genomics''. 2021 Nov; '''113''' (6):3811-3826
Single-molecule real-time transcript sequencing of developing cotton anthers facilitates genome annotation and fertility restoration candidate gene discovery. Description: Li, Ting, et al. Single-molecule real-time transcript sequencing of developing cotton anthers facilitates genome annotation and fertility restoration candidate gene discovery. ''Genomics''. 2021 Nov; '''113''' (6):4245-4253
The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads. Description: Wohner, Thomas W, et al. The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads. ''Genomics''. 2021 Nov; '''113''' (6):4173-4183
The salmon louse genome: Copepod features and parasitic adaptations. Description: Skern-Mauritzen, Rasmus, et al. The salmon louse genome: Copepod features and parasitic adaptations. ''Genomics''. 2021 Nov; '''113''' (6):3666-3680
Systematic investigation of the amino acid profiles that are correlated with xanthine oxidase inhibitory activity: Effects, mechanism and applications in protein source screening. Description: Huang, Yumeng, et al. Systematic investigation of the amino acid profiles that are correlated with xanthine oxidase inhibitory activity: Effects, mechanism and applications in protein source screening. ''Free Radic Biol Med''. 2021 Dec; '''177''': 326-336
Draft genome of the blister beetle, Epicauta chinensis. Description: Tian, Xing, et al. Draft genome of the blister beetle, Epicauta chinensis. ''Int J Biol Macromol''. 2021 Dec 15; '''193''' (Pt B):1694-1706
Extensive non-coding sequence divergence between the major human pathogen Aspergillus fumigatus and its relatives. Description: Brown, Alec, et al. Extensive non-coding sequence divergence between the major human pathogen Aspergillus fumigatus and its relatives. ''Front Fungal Biol''. 2022; '''3''':
Maternal diet associated with infants' intestinal microbiota mediated by predominant long-chain fatty acid in breast milk. Description: Xi, Menglu, et al. Maternal diet associated with infants' intestinal microbiota mediated by predominant long-chain fatty acid in breast milk. ''Front Microbiol''. 2022; '''13''': 1004175
Metagenomic and metabolic analyses of poly-extreme microbiome from an active crater volcano lake. Description: Pena-Ocana, Betsy Anaid, et al. Metagenomic and metabolic analyses of poly-extreme microbiome from an active crater volcano lake. ''Environ Res''. 2022 Jan; '''203''': 111862
RNA Virosphere in a Marine Zooplankton Community in the Subtropical Western North Pacific. Description: Hirai, Junya, et al. RNA Virosphere in a Marine Zooplankton Community in the Subtropical Western North Pacific. ''Microbes Environ''. 2022; '''37''' (5):
High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems. Description: Meaden, Sean, et al. High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems. ''Curr Biol''. 2022 Jan 10; '''32''' (1):220-227.e5
Safety assessment and probiotic characteristics of Enterococcus lactis JDM1. Description: Fu, Xiaomei, et al. Safety assessment and probiotic characteristics of Enterococcus lactis JDM1. ''Microb Pathog''. 2022 Feb; '''163''': 105380
Residual chlorine disrupts the microbial communities and spreads antibiotic resistance in freshwater. Description: Zhang, Zhenyan, et al. Residual chlorine disrupts the microbial communities and spreads antibiotic resistance in freshwater. ''J Hazard Mater''. 2022 Feb 5; '''423''' (Pt B):127152
Dietary licorice enhances in vivo cadmium detoxification and modulates gut microbial metabolism in mice. Description: Zheng, Xin, et al. Dietary licorice enhances in vivo cadmium detoxification and modulates gut microbial metabolism in mice. ''Imeta''. 2022 Mar; '''1''' (1):e7
Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals. Description: Zhou, Gang, et al. Metagenomic analysis of microbial communities and antibiotic resistance genes in spoiled household chemicals. ''Chemosphere''. 2022 Mar; '''291''' (Pt 1):132766
Phylogenomic classification and synteny network analyses deciphered the evolutionary landscape of aldo-keto reductase (AKR) gene superfamily in the plant kingdom. Description: Krishnamurthy, Panneerselvam, et al. Phylogenomic classification and synteny network analyses deciphered the evolutionary landscape of aldo-keto reductase (AKR) gene superfamily in the plant kingdom. ''Gene''. 2022 Mar 30; '''816''': 146169
Efficient Microcystis removal and sulfonamide-resistance gene propagation mitigation by constructed wetlands and functional genes analysis. Description: Wang, Bo, et al. Efficient Microcystis removal and sulfonamide-resistance gene propagation mitigation by constructed wetlands and functional genes analysis. ''Chemosphere''. 2022 Apr; '''292''': 133481
Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association. Description: Wu, Jun, et al. Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association. ''Environ Res''. 2022 May 1; '''207''': 112183
'Candidatus Mellornella promiscua' n. gen. n. sp. (Alphaproteobacteria: Rickettsiales: Anaplasmataceae): An intracytoplasmic, hepatopancreatic, pathogen of the flatback mud crab, Eurypanopeus depressus. Description: Bojko, Jamie, et al. 'Candidatus Mellornella promiscua' n. gen. n. sp. (Alphaproteobacteria: Rickettsiales: Anaplasmataceae): An intracytoplasmic, hepatopancreatic, pathogen of the flatback mud crab, Eurypanopeus depressus. ''J Invertebr Pathol''. 2022 May; '''190''': 107737
Comparison of gut microbiota compositions and corresponding genetic and metabolic features between guttate and plaque psoriasis by metagenomic sequencing. Description: Wang, Xiaoxu, et al. Comparison of gut microbiota compositions and corresponding genetic and metabolic features between guttate and plaque psoriasis by metagenomic sequencing. ''Microb Pathog''. 2022 Jun; '''167''': 105560
Easy efficient HDR-based targeted knock-in in Saccharomyces cerevisiae genome using CRISPR-Cas9 system. Description: Singh, Rajveer, et al. Easy efficient HDR-based targeted knock-in in Saccharomyces cerevisiae genome using CRISPR-Cas9 system. ''Bioengineered''. 2022 Jun; '''13''' (6):14857-14871
Metagenomic analysis further extends the role of Chloroflexi in fundamental biogeochemical cycles. Description: Narsing Rao, Manik Prabhu, et al. Metagenomic analysis further extends the role of Chloroflexi in fundamental biogeochemical cycles. ''Environ Res''. 2022 Jun; '''209''': 112888
Metagenomic assemblage genomes analyses reveal the polysaccharides hydrolyzing potential of marine group II euryarchaea. Description: Qu, Liping, et al. Metagenomic assemblage genomes analyses reveal the polysaccharides hydrolyzing potential of marine group II euryarchaea. ''Environ Res''. 2022 Jun; '''209''': 112865
PHISDetector: A Tool to Detect Diverse In Silico Phage-host Interaction Signals for Virome Studies. Description: Zhou, Fengxia, et al. PHISDetector: A Tool to Detect Diverse In Silico Phage-host Interaction Signals for Virome Studies. ''Genomics Proteomics Bioinformatics''. 2022 Jun; '''20''' (3):508-523
Soil phytoremediation reveals alteration in soil microbial metabolic activities along time gradient of cover crop mulching. Description: Wang, Yuanji, et al. Soil phytoremediation reveals alteration in soil microbial metabolic activities along time gradient of cover crop mulching. ''Environ Res''. 2022 Jun; '''209''': 112884
The Role of Acetate Kinase in the Human Parasite Entamoeba histolytica. Description: Dang, Thanh, et al. The Role of Acetate Kinase in the Human Parasite Entamoeba histolytica. ''Parasitologia''. 2022 Jun; '''2''' (2):147-159
Unraveling microbe-mediated degradation of lignin and lignin-derived aromatic fragments in the Pearl River Estuary sediments. Description: Li, Jia-Ling, et al. Unraveling microbe-mediated degradation of lignin and lignin-derived aromatic fragments in the Pearl River Estuary sediments. ''Chemosphere''. 2022 Jun; '''296''': 133995
Full length transcriptomes analysis of cold-resistance of Apis cerana in Changbai Mountain during overwintering period. Description: Liu, Nan-Nan, et al. Full length transcriptomes analysis of cold-resistance of Apis cerana in Changbai Mountain during overwintering period. ''Gene''. 2022 Jul 1; '''830''': 146503
Extracellular fructooligosaccharide degradation in Anaerostipes hadrus for co-metabolism with non-fructooligosaccharide utilizers. Description: Endo, Akihito, et al. Extracellular fructooligosaccharide degradation in Anaerostipes hadrus for co-metabolism with non-fructooligosaccharide utilizers. ''Biochem Biophys Res Commun''. 2022 Jul 12; '''613''': 81-86
Probing the transcriptome of Boehmeria nivea reveals candidate genes associated with the biosynthesis of chlorogenic acid. Description: Zhao, Liqiang, et al. Probing the transcriptome of Boehmeria nivea reveals candidate genes associated with the biosynthesis of chlorogenic acid. ''Gene''. 2022 Jul 30; '''833''': 146579
Cm28, a scorpion toxin having a unique primary structure, inhibits KV1.2 and KV1.3 with high affinity. Description: Naseem, Muhammad Umair, et al. Cm28, a scorpion toxin having a unique primary structure, inhibits KV1.2 and KV1.3 with high affinity. ''J Gen Physiol''. 2022 Aug 1; '''154''' (8):
Cross-feeding among microalgae facilitates nitrogen recovery at low C/N. Description: Kong, Lingrui, et al. Cross-feeding among microalgae facilitates nitrogen recovery at low C/N. ''Environ Res''. 2022 Aug; '''211''': 113052
HGT is widespread in insects and contributes to male courtship in lepidopterans. Description: Li, Yang, et al. HGT is widespread in insects and contributes to male courtship in lepidopterans. ''Cell''. 2022 Aug 4; '''185''' (16):2975-2987.e10
Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation. Description: Gerbracht, Jennifer V, et al. Comparative transcriptomics reveals the molecular toolkit used by an algivorous protist for cell wall perforation. ''Curr Biol''. 2022 Aug 8; '''32''' (15):3374-3384.e5
Comparative genomics analysis of Bacillus velezensis LOH112 isolated from a nonagenarian provides insights into its biocontrol and probiotic traits. Description: Ge, Zhenhuang, et al. Comparative genomics analysis of Bacillus velezensis LOH112 isolated from a nonagenarian provides insights into its biocontrol and probiotic traits. ''Gene''. 2022 Aug 15; '''835''': 146644
Genome analysis uncovers the prolific antagonistic and plant growth-promoting potential of endophyte Bacillus velezensis K1. Description: Nanjani, Sandhya, et al. Genome analysis uncovers the prolific antagonistic and plant growth-promoting potential of endophyte Bacillus velezensis K1. ''Gene''. 2022 Aug 20; '''836''': 146671
Dynamic patterns of quorum sensing signals in phycospheric microbes during a marine algal bloom. Description: Zhu, Jianming, et al. Dynamic patterns of quorum sensing signals in phycospheric microbes during a marine algal bloom. ''Environ Res''. 2022 Sep; '''212''' (Pt C):113443
Evolutionary conservation of maternal RNA localization in fishes and amphibians revealed by TOMO-Seq. Description: Naraine, Ravindra, et al. Evolutionary conservation of maternal RNA localization in fishes and amphibians revealed by TOMO-Seq. ''Dev Biol''. 2022 Sep; '''489''': 146-160
Higher spreading risk of antibacterial biocide and heavy metal resistance genes than antibiotic resistance genes in aerobic granular sludge. Description: Li, Dingchang, et al. Higher spreading risk of antibacterial biocide and heavy metal resistance genes than antibiotic resistance genes in aerobic granular sludge. ''Environ Res''. 2022 Sep; '''212''' (Pt C):113356
Maternal and neonatal viromes indicate the risk of offspring's gastrointestinal tract exposure to pathogenic viruses of vaginal origin during delivery. Description: Wang, Jinfeng, et al. Maternal and neonatal viromes indicate the risk of offspring's gastrointestinal tract exposure to pathogenic viruses of vaginal origin during delivery. ''mLife''. 2022 Sep; '''1''' (3):303-310
Metatranscriptomic profiling reveals diverse tick-borne bacteria, protozoans and viruses in ticks and wildlife from Australia. Description: Gofton, Alexander W, et al. Metatranscriptomic profiling reveals diverse tick-borne bacteria, protozoans and viruses in ticks and wildlife from Australia. ''Transbound Emerg Dis''. 2022 Sep; '''69''' (5):e2389-e2407
StrainPanDA: Linked reconstruction of strain composition and gene content profiles via pangenome-based decomposition of metagenomic data. Description: Hu, Han, et al. StrainPanDA: Linked reconstruction of strain composition and gene content profiles via pangenome-based decomposition of metagenomic data. ''Imeta''. 2022 Sep; '''1''' (3):e41
The enteric virome of cats with feline panleukopenia differs in abundance and diversity from healthy cats. Description: Van Brussel, Kate, et al. The enteric virome of cats with feline panleukopenia differs in abundance and diversity from healthy cats. ''Transbound Emerg Dis''. 2022 Sep; '''69''' (5):e2952-e2966
Metagenomics and metatranscriptomics analyses of antibiotic synthesis in activated sludge. Description: Huang, Yu, et al. Metagenomics and metatranscriptomics analyses of antibiotic synthesis in activated sludge. ''Environ Res''. 2022 Oct; '''213''': 113741
Adapting to climate with limited genetic diversity: Nucleotide, DNA methylation and microbiome variation among populations of the social spider Stegodyphus dumicola. Description: Aagaard, Anne, et al. Adapting to climate with limited genetic diversity: Nucleotide, DNA methylation and microbiome variation among populations of the social spider Stegodyphus dumicola. ''Mol Ecol''. 2022 Nov; '''31''' (22):5765-5783
Haplotype-resolved Chinese male genome assembly based on high-fidelity sequencing. Description: Yang, Xiaofei, et al. Haplotype-resolved Chinese male genome assembly based on high-fidelity sequencing. ''Fundam Res''. 2022 Nov; '''2''' (6):946-953
Metagenomic analysis reveals antibiotic resistance genes and virulence factors in the saline-alkali soils from the Yellow River Delta, China. Description: Yang, Chao, et al. Metagenomic analysis reveals antibiotic resistance genes and virulence factors in the saline-alkali soils from the Yellow River Delta, China. ''Environ Res''. 2022 Nov; '''214''' (Pt 2):113823
Metagenomic insights into the spatiotemporal responses of antibiotic resistance genes and microbial communities in aquaculture sediments. Description: Xu, Ming, et al. Metagenomic insights into the spatiotemporal responses of antibiotic resistance genes and microbial communities in aquaculture sediments. ''Chemosphere''. 2022 Nov; '''307''' (Pt 1):135596
Transitioning of People With Type 1 Diabetes From Multiple Daily Injections and Self-Monitoring of Blood Glucose Directly to MiniMed 780G Advanced Hybrid Closed-Loop System: A Two-Center, Randomized, Controlled Study. Description: Matejko, Bartlomiej, et al. Transitioning of People With Type 1 Diabetes From Multiple Daily Injections and Self-Monitoring of Blood Glucose Directly to MiniMed 780G Advanced Hybrid Closed-Loop System: A Two-Center, Randomized, Controlled Study. ''Diabetes Care''. 2022 Nov 1; '''45''' (11):2628-2635
Reaction of Pertechnetate in Highly Alkaline Solution: Synthesis and Characterization of the Nitridotrioxotechnetate Ba[TcO(3) N]. Description: Badea, D, et al. Reaction of Pertechnetate in Highly Alkaline Solution: Synthesis and Characterization of the Nitridotrioxotechnetate Ba[TcO(3) N]. ''Chemistry''. 2022 Nov 11; '''28''' (63):e202201738
The cancer chemotherapeutic 5-fluorouracil is a potent Fusobacterium nucleatum inhibitor and its activity is modified by intratumoral microbiota. Description: LaCourse, Kaitlyn D, et al. The cancer chemotherapeutic 5-fluorouracil is a potent Fusobacterium nucleatum inhibitor and its activity is modified by intratumoral microbiota. ''Cell Rep''. 2022 Nov 15; '''41''' (7):111625
Genomic and Metabolomic Analyses of the Medicinal Fungus Inonotus hispidus for Its Metabolite's Biosynthesis and Medicinal Application. Description: Zhang, Rui-Qi, et al. Genomic and Metabolomic Analyses of the Medicinal Fungus Inonotus hispidus for Its Metabolite's Biosynthesis and Medicinal Application. ''J Fungi (Basel)''. 2022 Nov 25; '''8''' (12):
A large-scale benchmark study of tools for the classification of protein-coding and non-coding RNAs. Description: Singh, Dalwinder, et al. A large-scale benchmark study of tools for the classification of protein-coding and non-coding RNAs. ''Nucleic Acids Res''. 2022 Nov 28; '''50''' (21):12094-12111
Characteristics of the Genome, Transcriptome and Ganoderic Acid of the Medicinal Fungus Ganoderma lingzhi. Description: Wu, Qiang, et al. Characteristics of the Genome, Transcriptome and Ganoderic Acid of the Medicinal Fungus Ganoderma lingzhi. ''J Fungi (Basel)''. 2022 Nov 28; '''8''' (12):
Inflammatory Bowel Disease-Associated Gut Commensals Degrade Components of the Extracellular Matrix. Description: Porras, Ana Maria, et al. Inflammatory Bowel Disease-Associated Gut Commensals Degrade Components of the Extracellular Matrix. ''mBio''. 2022 Nov 29; '''13''' (6):e0220122
Chromosome-level genome of a leaf vegetable Glebionis coronaria provides insights into the biosynthesis of monoterpenoids contributing to its special aroma. Description: Wang, Sen, et al. Chromosome-level genome of a leaf vegetable Glebionis coronaria provides insights into the biosynthesis of monoterpenoids contributing to its special aroma. ''DNA Res''. 2022 Dec 1; '''29''' (6):
Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis. Description: Rai, Amit, et al. Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis. ''DNA Res''. 2022 Dec 1; '''29''' (6):
De novo whole-genome assembly in an interspecific hybrid table grape, 'Shine Muscat'. Description: Shirasawa, Kenta, et al. De novo whole-genome assembly in an interspecific hybrid table grape, 'Shine Muscat'. ''DNA Res''. 2022 Dec 1; '''29''' (6):
Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014. Description: Wang, Jun, et al. Diverse viromes in polar regions: A retrospective study of metagenomic data from Antarctic animal feces and Arctic frozen soil in 2012-2014. ''Virol Sin''. 2022 Dec; '''37''' (6):883-893
Evidence for evolutionary adaptation of mixotrophic nanoflagellates to warmer temperatures. Description: Lepori-Bui, Michelle, et al. Evidence for evolutionary adaptation of mixotrophic nanoflagellates to warmer temperatures. ''Glob Chang Biol''. 2022 Dec; '''28''' (23):7094-7107
Genetic and physiological insights into the diazotrophic activity of a non-cyanobacterial marine diazotroph. Description: Joublin-Delavat, Aurelie, et al. Genetic and physiological insights into the diazotrophic activity of a non-cyanobacterial marine diazotroph. ''Environ Microbiol''. 2022 Dec; '''24''' (12):6510-6523
Improved assembly and annotation of the sesame genome. Description: Wang, Mingcheng, et al. Improved assembly and annotation of the sesame genome. ''DNA Res''. 2022 Dec 1; '''29''' (6):
Improved pre-test likelihood estimation of coronary artery disease using phonocardiography. Description: Larsen, Bjarke Skogstad, et al. Improved pre-test likelihood estimation of coronary artery disease using phonocardiography. ''Eur Heart J Digit Health''. 2022 Dec; '''3''' (4):600-609
Novel RNA viruses in oysters revealed by virome. Description: Zhu, Peng, et al. Novel RNA viruses in oysters revealed by virome. ''Imeta''. 2022 Dec; '''1''' (4):e65
The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency. Description: Garassino, Francesco, et al. The genome sequence of Hirschfeldia incana, a new Brassicaceae model to improve photosynthetic light-use efficiency. ''Plant J''. 2022 Dec; '''112''' (5):1298-1315
New globally distributed bacterial phyla within the FCB superphylum. Description: Gong, Xianzhe, et al. New globally distributed bacterial phyla within the FCB superphylum. ''Nat Commun''. 2022 Dec 6; '''13''' (1):7516
Enhanced Arbovirus Surveillance with High-Throughput Metatranscriptomic Processing of Field-Collected Mosquitoes. Description: Batovska, Jana, et al. Enhanced Arbovirus Surveillance with High-Throughput Metatranscriptomic Processing of Field-Collected Mosquitoes. ''Viruses''. 2022 Dec 11; '''14''' (12):
Integrated multi-omics of the gastrointestinal microbiome and ruminant host reveals metabolic adaptation underlying early life development. Description: Yan, Xiaoting, et al. Integrated multi-omics of the gastrointestinal microbiome and ruminant host reveals metabolic adaptation underlying early life development. ''Microbiome''. 2022 Dec 12; '''10''' (1):222
Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer. Description: Li, Ruoyan, et al. Mapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancer. ''Cancer Cell''. 2022 Dec 12; '''40''' (12):1583-1599.e10
Evidence for Widespread Class II Microcins in Enterobacterales Genomes. Description: Cole, T Jeffrey, et al. Evidence for Widespread Class II Microcins in Enterobacterales Genomes. ''Appl Environ Microbiol''. 2022 Dec 13; '''88''' (23):e0148622
Cell-Penetrating Peptide-Peptide Nucleic Acid Conjugates as a Tool for Protein Functional Elucidation in the Native Bacterium. Description: Yokoi, Yasuhito, et al. Cell-Penetrating Peptide-Peptide Nucleic Acid Conjugates as a Tool for Protein Functional Elucidation in the Native Bacterium. ''Molecules''. 2022 Dec 15; '''27''' (24):
Impact of HIV infection and integrase strand transfer inhibitors-based treatment on the gut virome. Description: Villoslada-Blanco, Pablo, et al. Impact of HIV infection and integrase strand transfer inhibitors-based treatment on the gut virome. ''Sci Rep''. 2022 Dec 15; '''12''' (1):21658
A Non-Gradual Development Process of Cicada Eyes at the End of the Fifth-Instar Nymphal Stage to Obtain Visual Ability. Description: Su, Minjing, et al. A Non-Gradual Development Process of Cicada Eyes at the End of the Fifth-Instar Nymphal Stage to Obtain Visual Ability. ''Insects''. 2022 Dec 16; '''13''' (12):
Single-Molecule Real-Time Sequencing of Full-Length Transcriptome and Identification of Genes Related to Male Development in Cannabis sativa. Description: Jiang, Hui, et al. Single-Molecule Real-Time Sequencing of Full-Length Transcriptome and Identification of Genes Related to Male Development in Cannabis sativa. ''Plants (Basel)''. 2022 Dec 16; '''11''' (24):
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. Description: Li, Jiajia, et al. The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum. ''J Fungi (Basel)''. 2022 Dec 17; '''8''' (12):
Comparative Genomic Insights into the Evolution of Halobacteria-Associated "Candidatus Nanohaloarchaeota". Description: Zhao, Dahe, et al. Comparative Genomic Insights into the Evolution of Halobacteria-Associated "Candidatus Nanohaloarchaeota". ''mSystems''. 2022 Dec 20; '''7''' (6):e0066922
Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome Analysis. Description: Chen, Junjie, et al. Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome Analysis. ''mSystems''. 2022 Dec 20; '''7''' (6):e0090722
Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea. Description: Wicaksono, Wisnu Adi, et al. Function-Based Rhizosphere Assembly along a Gradient of Desiccation in the Former Aral Sea. ''mSystems''. 2022 Dec 20; '''7''' (6):e0073922
Genomic diversification of the specialized parasite of the fungus-growing ant symbiosis. Description: Gotting, Kirsten, et al. Genomic diversification of the specialized parasite of the fungus-growing ant symbiosis. ''Proc Natl Acad Sci U S A''. 2022 Dec 20; '''119''' (51):e2213096119
Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens. Description: Fijarczyk, Anna, et al. Independent Evolution Has Led to Distinct Genomic Signatures in Dutch Elm Disease-Causing Fungi and Other Vascular Wilts-Causing Fungal Pathogens. ''J Fungi (Basel)''. 2022 Dec 20; '''9''' (1):
Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem. Description: Sanchez-Navarro, Roberto, et al. Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem. ''mSystems''. 2022 Dec 20; '''7''' (6):e0063222
Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes. Description: Patin, N V, et al. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes. ''mSystems''. 2022 Dec 20; '''7''' (6):e0059522
Metabolic Potential of Microbial Communities in the Hypersaline Sediments of the Bonneville Salt Flats. Description: McGonigle, Julia M, et al. Metabolic Potential of Microbial Communities in the Hypersaline Sediments of the Bonneville Salt Flats. ''mSystems''. 2022 Dec 20; '''7''' (6):e0084622
Selection for Translational Efficiency in Genes Associated with Alphaproteobacterial Gene Transfer Agents. Description: Kogay, Roman, et al. Selection for Translational Efficiency in Genes Associated with Alphaproteobacterial Gene Transfer Agents. ''mSystems''. 2022 Dec 20; '''7''' (6):e0089222
A Catalog of over 5,000 Metagenome-Assembled Microbial Genomes from the Caprinae Gut Microbiota. Description: Zhang, Xiao-Xuan, et al. A Catalog of over 5,000 Metagenome-Assembled Microbial Genomes from the Caprinae Gut Microbiota. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0221122
Alginate Alleviates Dextran Sulfate Sodium-Induced Colitis by Promoting Bifidobacterium animalis and Intestinal Hyodeoxycholic Acid Synthesis in Mice. Description: Pi, Yu, et al. Alginate Alleviates Dextran Sulfate Sodium-Induced Colitis by Promoting Bifidobacterium animalis and Intestinal Hyodeoxycholic Acid Synthesis in Mice. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0297922
A Novel Inovirus Reprograms Metabolism and Motility of Marine Alteromonas. Description: Jia, Kuntong, et al. A Novel Inovirus Reprograms Metabolism and Motility of Marine Alteromonas. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0338822
Comparative Genomics of the Genus Pseudomonas Reveals Host- and Environment-Specific Evolution. Description: Saati-Santamaria, Zaki, et al. Comparative Genomics of the Genus Pseudomonas Reveals Host- and Environment-Specific Evolution. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0237022
Cyanobacterial Blooms Are Not a Result of Positive Selection by Freshwater Eutrophication. Description: Yu, Yang, et al. Cyanobacterial Blooms Are Not a Result of Positive Selection by Freshwater Eutrophication. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0319422
Distributional Pattern of Bacteria, Protists, and Diatoms in Ocean according to Water Depth in the Northern South China Sea. Description: Xu, Shannan, et al. Distributional Pattern of Bacteria, Protists, and Diatoms in Ocean according to Water Depth in the Northern South China Sea. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0275921
In Silico Characterization of bla(NDM)-Harboring Conjugative Plasmids in Acinetobacter Species. Description: Tang, Biao, et al. In Silico Characterization of bla(NDM)-Harboring Conjugative Plasmids in Acinetobacter Species. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0210222
Investigation of the Virome and Characterization of Issyk-Kul Virus from Swedish Myotis brandtii Bats. Description: Cholleti, Harindranath, et al. Investigation of the Virome and Characterization of Issyk-Kul Virus from Swedish Myotis brandtii Bats. ''Pathogens''. 2022 Dec 21; '''12''' (1):
Proteome-wide 3D structure prediction provides insights into the ancestral metabolism of ancient archaea and bacteria. Description: Zhao, Weishu, et al. Proteome-wide 3D structure prediction provides insights into the ancestral metabolism of ancient archaea and bacteria. ''Nat Commun''. 2022 Dec 21; '''13''' (1):7861
Unveiling the Wheat Microbiome under Varied Agricultural Field Conditions. Description: Jaiswal, Sarika, et al. Unveiling the Wheat Microbiome under Varied Agricultural Field Conditions. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0263322
Virome Analysis of Normal and Growth Retardation Disease-Affected Macrobrachium rosenbergii. Description: Zhou, Dandan, et al. Virome Analysis of Normal and Growth Retardation Disease-Affected Macrobrachium rosenbergii. ''Microbiol Spectr''. 2022 Dec 21; '''10''' (6):e0146222
Chromosome-level genome assembly of the Siberian chipmunk (Tamias sibiricus). Description: Li, Ran, et al. Chromosome-level genome assembly of the Siberian chipmunk (Tamias sibiricus). ''Sci Data''. 2022 Dec 24; '''9''' (1):783
Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes. Description: Grevesse, Thomas, et al. Degradation pathways for organic matter of terrestrial origin are widespread and expressed in Arctic Ocean microbiomes. ''Microbiome''. 2022 Dec 24; '''10''' (1):237
Gut microbiota as an antioxidant system in centenarians associated with high antioxidant activities of gut-resident Lactobacillus. Description: Wu, Lei, et al. Gut microbiota as an antioxidant system in centenarians associated with high antioxidant activities of gut-resident Lactobacillus. ''NPJ Biofilms Microbiomes''. 2022 Dec 24; '''8''' (1):102
Inflammatory microbes and genes as potential biomarkers of Parkinson's disease. Description: Nie, Shiqing, et al. Inflammatory microbes and genes as potential biomarkers of Parkinson's disease. ''NPJ Biofilms Microbiomes''. 2022 Dec 24; '''8''' (1):101
Virus diversity and interactions with hosts in deep-sea hydrothermal vents. Description: Cheng, Ruolin, et al. Virus diversity and interactions with hosts in deep-sea hydrothermal vents. ''Microbiome''. 2022 Dec 24; '''10''' (1):235
Evaluating the ecological hypothesis: early life salivary microbiome assembly predicts dental caries in a longitudinal case-control study. Description: Blostein, Freida, et al. Evaluating the ecological hypothesis: early life salivary microbiome assembly predicts dental caries in a longitudinal case-control study. ''Microbiome''. 2022 Dec 26; '''10''' (1):240
Bromine Pentafluoride BrF(5) , the Formation of [BrF(6) ](-) Salts, and the Stereochemical (In)activity of the Bromine Lone Pairs. Description: Mobs, Martin, et al. Bromine Pentafluoride BrF(5) , the Formation of [BrF(6) ](-) Salts, and the Stereochemical (In)activity of the Bromine Lone Pairs. ''Chemistry''. 2022 Dec 27; '''28''' (72):e202202466
Phage-Host Prediction Using a Computational Tool Coupled with 16S rRNA Gene Amplicon Sequencing. Description: Andrianjakarivony, Harilanto Felana, et al. Phage-Host Prediction Using a Computational Tool Coupled with 16S rRNA Gene Amplicon Sequencing. ''Viruses''. 2022 Dec 27; '''15''' (1):
The gold-ringed octopus (Amphioctopus fangsiao) genome and cerebral single-nucleus transcriptomes provide insights into the evolution of karyotype and neural novelties. Description: Jiang, Dianhang, et al. The gold-ringed octopus (Amphioctopus fangsiao) genome and cerebral single-nucleus transcriptomes provide insights into the evolution of karyotype and neural novelties. ''BMC Biol''. 2022 Dec 27; '''20''' (1):289
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes. Description: Chen, Stephanie H, et al. A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes. ''Gigascience''. 2022 Dec 28; '''12''':
The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator. Description: Yuan, Ruizhong, et al. The chromosome-level genome of Chinese praying mantis Tenodera sinensis (Mantodea: Mantidae) reveals its biology as a predator. ''Gigascience''. 2022 Dec 28; '''12''':
Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut. Description: Li, Ran, et al. Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut. ''Nat Commun''. 2022 Dec 29; '''13''' (1):7978
Antibiotic Susceptibility, Resistance Gene Determinants and Corresponding Genomic Regions in Lactobacillus amylovorus Isolates Derived from Wild Boars and Domestic Pigs. Description: Moravkova, Monika, et al. Antibiotic Susceptibility, Resistance Gene Determinants and Corresponding Genomic Regions in Lactobacillus amylovorus Isolates Derived from Wild Boars and Domestic Pigs. ''Microorganisms''. 2022 Dec 30; '''11''' (1):
Mapping the early life gut microbiome in neonates with critical congenital heart disease: multiomics insights and implications for host metabolic and immunological health. Description: Huang, Yuan, et al. Mapping the early life gut microbiome in neonates with critical congenital heart disease: multiomics insights and implications for host metabolic and immunological health. ''Microbiome''. 2022 Dec 30; '''10''' (1):245
A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis. Description: Zhao, Hongda, et al. A 1.5-Mb continuous endogenous viral region in the arbuscular mycorrhizal fungus Rhizophagus irregularis. ''Virus Evol''. 2023; '''9''' (2):vead064
Abundance and prevalence of ESBL coding genes in patients undergoing first line eradication therapy for Helicobacter pylori. Description: Gudra, Dita, et al. Abundance and prevalence of ESBL coding genes in patients undergoing first line eradication therapy for Helicobacter pylori. ''PLoS One''. 2023; '''18''' (8):e0289879
A collection of Trichoderma isolates from natural environments in Sardinia reveals a complex virome that includes negative-sense fungal viruses with unprecedented genome organizations. Description: Pagnoni, Saul, et al. A collection of Trichoderma isolates from natural environments in Sardinia reveals a complex virome that includes negative-sense fungal viruses with unprecedented genome organizations. ''Virus Evol''. 2023; '''9''' (2):vead042
A distinct microbiota signature precedes the clinical diagnosis of hepatocellular carcinoma. Description: Yang, Jinhuan, et al. A distinct microbiota signature precedes the clinical diagnosis of hepatocellular carcinoma. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2201159
African eggplant-associated virus: Characterization of a novel tobamovirus identified from Solanum macrocarpon and assessment of its potential impact on tomato and pepper crops. Description: Giesbers, Anne K J, et al. African eggplant-associated virus: Characterization of a novel tobamovirus identified from Solanum macrocarpon and assessment of its potential impact on tomato and pepper crops. ''PLoS One''. 2023; '''18''' (4):e0277840
A glossy mutant in onion (Allium cepa L.) shows decreased expression of wax biosynthesis genes. Description: Manape, Tushar Kashinath, et al. A glossy mutant in onion (Allium cepa L.) shows decreased expression of wax biosynthesis genes. ''Front Plant Sci''. 2023; '''14''': 1245308
A splicing site change between exon 5 and 6 of the nuclear-encoded chloroplast-localized HvYGL8 gene results in reduced chlorophyll content and plant height in barley. Description: Xia, Xue, et al. A splicing site change between exon 5 and 6 of the nuclear-encoded chloroplast-localized HvYGL8 gene results in reduced chlorophyll content and plant height in barley. ''Front Plant Sci''. 2023; '''14''': 1327246
Assembly of novel microbial genomes from gut metagenomes of rhesus macaque (Macaca mulatta). Description: Yang, Shengzhi, et al. Assembly of novel microbial genomes from gut metagenomes of rhesus macaque (Macaca mulatta). ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2188848
Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp. Description: Cailleau, Guillaume, et al. Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp. ''Front Fungal Biol''. 2023; '''4''': 1285531
Benefits of Gut Microbiota Reconstitution by Beta 1,3-1,6 Glucans in Subjects with Autism Spectrum Disorder and Other Neurodegenerative Diseases. Description: Raghavan, Kadalraja, et al. Benefits of Gut Microbiota Reconstitution by Beta 1,3-1,6 Glucans in Subjects with Autism Spectrum Disorder and Other Neurodegenerative Diseases. ''J Alzheimers Dis''. 2023; '''94''' (s1):S241-S252
Both Disease Activity and HLA-B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients. Description: Berland, Magali, et al. Both Disease Activity and HLA-B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients. ''Arthritis Rheumatol''. 2023 Jan; '''75''' (1):41-52
Cascading effects of prey identity on gene expression in a kleptoplastidic ciliate. Description: Paight, Christopher, et al. Cascading effects of prey identity on gene expression in a kleptoplastidic ciliate. ''J Eukaryot Microbiol''. 2023 Jan; '''70''' (1):e12940
Chaihu Shugan prevents cholesterol gallstone formation by ameliorating the microbiota dysbiosis and metabolic disturbance in mice. Description: Wang, Wei, et al. Chaihu Shugan prevents cholesterol gallstone formation by ameliorating the microbiota dysbiosis and metabolic disturbance in mice. ''Front Pharmacol''. 2023; '''14''': 1291236
Characterization of Bifidobacterium kashiwanohense that utilizes both milk- and plant-derived oligosaccharides. Description: Orihara, Kento, et al. Characterization of Bifidobacterium kashiwanohense that utilizes both milk- and plant-derived oligosaccharides. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2207455
Cold stress induces differential gene expression of retained homeologs in Camelina sativa cv Suneson. Description: Fang, Chao, et al. Cold stress induces differential gene expression of retained homeologs in Camelina sativa cv Suneson. ''Front Plant Sci''. 2023; '''14''': 1271625
Complex organic matter degradation by secondary consumers in chemolithoautotrophy-based subsurface geothermal ecosystems. Description: Paul, Raegan, et al. Complex organic matter degradation by secondary consumers in chemolithoautotrophy-based subsurface geothermal ecosystems. ''PLoS One''. 2023; '''18''' (8):e0281277
Construction of a de novo assembly pipeline using multiple transcriptome data sets from Cypripedium macranthos (Orchidaceae). Description: Kambara, Kota, et al. Construction of a de novo assembly pipeline using multiple transcriptome data sets from Cypripedium macranthos (Orchidaceae). ''PLoS One''. 2023; '''18''' (6):e0286804
D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease. Description: Umeda, Satoko, et al. D-amino Acids Ameliorate Experimental Colitis and Cholangitis by Inhibiting Growth of Proteobacteria: Potential Therapeutic Role in Inflammatory Bowel Disease. ''Cell Mol Gastroenterol Hepatol''. 2023; '''16''' (6):1011-1031
Disentangling hindgut metabolism in the American cockroach through single-cell genomics and metatranscriptomics. Description: Dukes, Helen E, et al. Disentangling hindgut metabolism in the American cockroach through single-cell genomics and metatranscriptomics. ''Front Microbiol''. 2023; '''14''': 1156809
Diversity and correlation analysis of different root exudates on the regulation of microbial structure and function in soil planted with Panax notoginseng. Description: Shi, Huineng, et al. Diversity and correlation analysis of different root exudates on the regulation of microbial structure and function in soil planted with Panax notoginseng. ''Front Microbiol''. 2023; '''14''': 1282689
Feasibility insights into the application of Paenibacillus pabuli E1 in animal feed to eliminate non-starch polysaccharides. Description: Li, Gen, et al. Feasibility insights into the application of Paenibacillus pabuli E1 in animal feed to eliminate non-starch polysaccharides. ''Front Microbiol''. 2023; '''14''': 1205767
First genome assembly and annotation of Sanghuangporus weigelae uncovers its medicinal functions, metabolic pathways, and evolution. Description: Jin, Can, et al. First genome assembly and annotation of Sanghuangporus weigelae uncovers its medicinal functions, metabolic pathways, and evolution. ''Front Cell Infect Microbiol''. 2023; '''13''': 1325418
Gene gain facilitated endosymbiotic evolution of Chlamydiae. Description: Dharamshi, Jennah E, et al. Gene gain facilitated endosymbiotic evolution of Chlamydiae. ''Nat Microbiol''. 2023 Jan; '''8''' (1):40-54
Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley. Description: Zhang, Wenying, et al. Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley. ''Plant Biotechnol J''. 2023 Jan; '''21''' (1):46-62
Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton. Description: Omar, Naaman M, et al. Genomic capacities for Reactive Oxygen Species metabolism across marine phytoplankton. ''PLoS One''. 2023; '''18''' (4):e0284580
Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides. Description: Derrien, Muriel, et al. Gut microbiome function and composition in infants from rural Kenya and association with human milk oligosaccharides. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2178793
Identification and characterization of a novel chromosomal aminoglycoside 3'-O-phosphotransferase, APH(3')-Id, from Kluyvera intermedia DW18 isolated from the sewage of an animal farm. Description: Sha, Yuning, et al. Identification and characterization of a novel chromosomal aminoglycoside 3'-O-phosphotransferase, APH(3')-Id, from Kluyvera intermedia DW18 isolated from the sewage of an animal farm. ''Front Microbiol''. 2023; '''14''': 1224464
Identification of a biosynthetic gene cluster for a red pigment cristazarin produced by a lichen-forming fungus Cladonia metacorallifera. Description: Paguirigan, Jaycee Augusto Gumiran, et al. Identification of a biosynthetic gene cluster for a red pigment cristazarin produced by a lichen-forming fungus Cladonia metacorallifera. ''PLoS One''. 2023; '''18''' (6):e0287559
Impact of nanopore-based metagenome sequencing on tick-borne virus detection. Description: Ergunay, Koray, et al. Impact of nanopore-based metagenome sequencing on tick-borne virus detection. ''Front Microbiol''. 2023; '''14''': 1177651
Insights into the genome of Methylobacterium sp. NMS14P, a novel bacterium for growth promotion of maize, chili, and sugarcane. Description: Jirakkakul, Jiraporn, et al. Insights into the genome of Methylobacterium sp. NMS14P, a novel bacterium for growth promotion of maize, chili, and sugarcane. ''PLoS One''. 2023; '''18''' (2):e0281505
Intestinal acetic acid regulates the synthesis of sex pheromones in captive giant pandas. Description: Zhang, Ming-Yue, et al. Intestinal acetic acid regulates the synthesis of sex pheromones in captive giant pandas. ''Front Microbiol''. 2023; '''14''': 1234676
Longitudinal anellome dynamics in the upper respiratory tract of children with acute respiratory tract infections. Description: Cao, Le, et al. Longitudinal anellome dynamics in the upper respiratory tract of children with acute respiratory tract infections. ''Virus Evol''. 2023; '''9''' (2):vead045
Loss of symbiotic and increase of virulent bacteria through microbial networks in Lynch syndrome colon carcinogenesis. Description: Sadeghi, Mohammad, et al. Loss of symbiotic and increase of virulent bacteria through microbial networks in Lynch syndrome colon carcinogenesis. ''Front Oncol''. 2023; '''13''': 1313735
Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation. Description: Wang, Yuhua, et al. Metagenomics-based exploration of key soil microorganisms contributing to continuously planted Casuarina equisetifolia growth inhibition and their interactions with soil nutrient transformation. ''Front Plant Sci''. 2023; '''14''': 1324184
Phyllosphere-associated microbiota in built environment: Do they have the potential to antagonize human pathogens? Description: Adi Wicaksono, Wisnu, et al. Phyllosphere-associated microbiota in built environment: Do they have the potential to antagonize human pathogens? ''J Adv Res''. 2023 Jan; '''43''': 109-121
Preliminary exploratory research on the application value of oral and intestinal meta-genomics in predicting subjects' occupations-A case study of the distinction between students and migrant workers. Description: Dou, Shujie, et al. Preliminary exploratory research on the application value of oral and intestinal meta-genomics in predicting subjects' occupations-A case study of the distinction between students and migrant workers. ''Front Microbiol''. 2023; '''14''': 1330603
Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs. Description: Klemm, Paul, et al. Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs. ''Front Bioinform''. 2023; '''3''': 1322477
Proteome-wide comparison of tertiary protein structures reveals molecular mimicry in Plasmodium-human interactions. Description: Muthye, Viraj, et al. Proteome-wide comparison of tertiary protein structures reveals molecular mimicry in Plasmodium-human interactions. ''Front Parasitol''. 2023; '''2''': 1162697
Retinal transcriptome of neonatal mice after optic nerve injury. Description: Yao, Shi-Qi, et al. Retinal transcriptome of neonatal mice after optic nerve injury. ''PLoS One''. 2023; '''18''' (5):e0286344
Safety, feasibility, tolerability, and clinical effects of repeated psilocybin dosing combined with non-directive support in the treatment of obsessive-compulsive disorder: protocol for a randomized, waitlist-controlled trial with blinded ratings. Description: Ching, Terence H W, et al. Safety, feasibility, tolerability, and clinical effects of repeated psilocybin dosing combined with non-directive support in the treatment of obsessive-compulsive disorder: protocol for a randomized, waitlist-controlled trial with blinded ratings. ''Front Psychiatry''. 2023; '''14''': 1278823
Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America. Description: Mannion, Anthony, et al. Shotgun Metagenomics of Gastric Biopsies Reveals Compositional and Functional Microbiome Shifts in High- and Low-Gastric-Cancer-Risk Populations from Colombia, South America. ''Gut Microbes''. 2023 Jan-Dec; '''15''' (1):2186677
Supplementation of dietary areca nut extract modulates the growth performance, cecal microbiota composition, and immune function in Wenchang chickens. Description: Wang, Shiping, et al. Supplementation of dietary areca nut extract modulates the growth performance, cecal microbiota composition, and immune function in Wenchang chickens. ''Front Vet Sci''. 2023; '''10''': 1278312
The first released available genome of the common ice plant ( Mesembryanthemum crystallinum L.) extended the research region on salt tolerance, C (3)-CAM photosynthetic conversion, and halophilism. Description: Sato, Ryoma, et al. The first released available genome of the common ice plant ( Mesembryanthemum crystallinum L.) extended the research region on salt tolerance, C (3)-CAM photosynthetic conversion, and halophilism. ''F1000Res''. 2023; '''12''': 448
The nematicide emamectin benzoate increases ROS accumulation in Pinus massoniana and poison Monochamus alternatus. Description: Liu, Fengzhu, et al. The nematicide emamectin benzoate increases ROS accumulation in Pinus massoniana and poison Monochamus alternatus. ''PLoS One''. 2023; '''18''' (12):e0295945
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection. Description: Xu, Ruijie, et al. The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection. ''PLoS One''. 2023; '''18''' (4):e0284031
Transcriptome and metabolome analysis reveals the effect of flavonoids on flower color variation in Dendrobium nobile Lindl. Description: Qiu, Yujie, et al. Transcriptome and metabolome analysis reveals the effect of flavonoids on flower color variation in Dendrobium nobile Lindl. ''Front Plant Sci''. 2023; '''14''': 1220507
Whole genome sequence and diversity in multigene families of Babesia ovis. Description: Yamagishi, Junya, et al. Whole genome sequence and diversity in multigene families of Babesia ovis. ''Front Cell Infect Microbiol''. 2023; '''13''': 1194608
Genome-wide signatures of adaptation to extreme environments in red algae. Description: Cho, Chung Hyun, et al. Genome-wide signatures of adaptation to extreme environments in red algae. ''Nat Commun''. 2023 Jan 4; '''14''' (1):10
Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome. Description: Vosseberg, Julian, et al. Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome. ''Mol Biol Evol''. 2023 Jan 4; '''40''' (1):
Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi. Description: Reynolds, Nicole K, et al. Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi. ''Genome Biol Evol''. 2023 Jan 4; '''15''' (1):
Sr(II) and Ba(II) Alkaline Earth Metal-Organic Frameworks (AE-MOFs) for Selective Gas Adsorption, Energy Storage, and Environmental Application. Description: Kiraly, Nikolas, et al. Sr(II) and Ba(II) Alkaline Earth Metal-Organic Frameworks (AE-MOFs) for Selective Gas Adsorption, Energy Storage, and Environmental Application. ''Nanomaterials (Basel)''. 2023 Jan 4; '''13''' (2):
Chromosome-level genome assembly of a high-altitude-adapted frog (Rana kukunoris) from the Tibetan plateau provides insight into amphibian genome evolution and adaptation. Description: Chen, Wei, et al. Chromosome-level genome assembly of a high-altitude-adapted frog (Rana kukunoris) from the Tibetan plateau provides insight into amphibian genome evolution and adaptation. ''Front Zool''. 2023 Jan 6; '''20''' (1):1
Thirteen new species of butterflies (Lepidoptera: Hesperiidae) from Texas. Description: Zhang, Jing, et al. Thirteen new species of butterflies (Lepidoptera: Hesperiidae) from Texas. ''Insecta mundi''. 2023 Jan 6; '''2023''':
Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies. Description: Yin, Xin, et al. Differences in pseudogene evolution contributed to the contrasting flavors of turnip and Chiifu, two Brassica rapa subspecies. ''Plant Commun''. 2023 Jan 9; '''4''' (1):100427
Taxonomic Assignment-Based Genome Reconstruction from Apical Periodontal Metagenomes to Identify Antibiotic Resistance and Virulence Factors. Description: Kumari, K Swapna, et al. Taxonomic Assignment-Based Genome Reconstruction from Apical Periodontal Metagenomes to Identify Antibiotic Resistance and Virulence Factors. ''Life (Basel)''. 2023 Jan 9; '''13''' (1):
The nearly complete assembly of the Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution. Description: Li, Jinglong, et al. The nearly complete assembly of the Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution. ''Plant Commun''. 2023 Jan 9; '''4''' (1):100422
De novo sequencing, diploid assembly, and annotation of the black carpenter ant, Camponotus pennsylvanicus, and its symbionts by one person for $1000, using nanopore sequencing. Description: Faulk, Christopher. De novo sequencing, diploid assembly, and annotation of the black carpenter ant, Camponotus pennsylvanicus, and its symbionts by one person for $1000, using nanopore sequencing. ''Nucleic Acids Res''. 2023 Jan 11; '''51''' (1):17-28
Structural Diversity, XAS and Magnetism of Copper(II)-Nickel(II) Heterometallic Complexes Based on the [Ni(NCS)(6)](4-) Unit. Description: Tereba, Natalia, et al. Structural Diversity, XAS and Magnetism of Copper(II)-Nickel(II) Heterometallic Complexes Based on the [Ni(NCS)(6)](4-) Unit. ''Materials (Basel)''. 2023 Jan 11; '''16''' (2):
The ESKAPE mobilome contributes to the spread of antimicrobial resistance and CRISPR-mediated conflict between mobile genetic elements. Description: Botelho, Joao, et al. The ESKAPE mobilome contributes to the spread of antimicrobial resistance and CRISPR-mediated conflict between mobile genetic elements. ''Nucleic Acids Res''. 2023 Jan 11; '''51''' (1):236-252
Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse. Description: Li, Cunyuan, et al. Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse. ''Microbiome''. 2023 Jan 12; '''11''' (1):7
Culturomics- and metagenomics-based insights into the microbial community and function of rhizosphere soils in Sinai desert farming systems. Description: Lian, Wen-Hui, et al. Culturomics- and metagenomics-based insights into the microbial community and function of rhizosphere soils in Sinai desert farming systems. ''Environ Microbiome''. 2023 Jan 13; '''18''' (1):4
Unraveling the Secrets of a Double-Life Fungus by Genomics: Ophiocordyceps australis CCMB661 Displays Molecular Machinery for Both Parasitic and Endophytic Lifestyles. Description: de Menezes, Thais Almeida, et al. Unraveling the Secrets of a Double-Life Fungus by Genomics: Ophiocordyceps australis CCMB661 Displays Molecular Machinery for Both Parasitic and Endophytic Lifestyles. ''J Fungi (Basel)''. 2023 Jan 13; '''9''' (1):
Characterization of a Novel Infectious Pancreatic Necrosis Virus (IPNV) from Genogroup 6 Identified in Sea Trout (Salmo trutta) from Lake Vanern, Sweden. Description: Persson, B David, et al. Characterization of a Novel Infectious Pancreatic Necrosis Virus (IPNV) from Genogroup 6 Identified in Sea Trout (Salmo trutta) from Lake Vanern, Sweden. ''Vet Sci''. 2023 Jan 14; '''10''' (1):
Prioritization of New Candidate Genes for Rare Genetic Diseases by a Disease-Aware Evaluation of Heterogeneous Molecular Networks. Description: de la Fuente, Lorena, et al. Prioritization of New Candidate Genes for Rare Genetic Diseases by a Disease-Aware Evaluation of Heterogeneous Molecular Networks. ''Int J Mol Sci''. 2023 Jan 14; '''24''' (2):
A Novel Indole Derivative with Superior Photophysical Performance for Fluorescent Probe, pH-Sensing, and Logic Gates. Description: Liu, Hai-Ling, et al. A Novel Indole Derivative with Superior Photophysical Performance for Fluorescent Probe, pH-Sensing, and Logic Gates. ''Int J Mol Sci''. 2023 Jan 15; '''24''' (2):
A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex? Description: Pina-Martins, Francisco, et al. A first look at sea-lavenders genomics - can genome wide SNP information tip the scales of controversy in the Limonium vulgare species complex? ''BMC Plant Biol''. 2023 Jan 16; '''23''' (1):34
Characterization of Non-Obstructive Azoospermia in Men Using Gut Microbial Profiling. Description: Cao, Yalei, et al. Characterization of Non-Obstructive Azoospermia in Men Using Gut Microbial Profiling. ''J Clin Med''. 2023 Jan 16; '''12''' (2):
Crystal Structure and Chemical Bonds in [Cu(II)(2)(Tolf)(4)(MeOH)(2)]∙2MeOH. Description: Majerz, Irena, et al. Crystal Structure and Chemical Bonds in [Cu(II)(2)(Tolf)(4)(MeOH)(2)]∙2MeOH. ''Int J Mol Sci''. 2023 Jan 16; '''24''' (2):
Micro and macroevolution of sea anemone venom phenotype. Description: Smith, Edward G, et al. Micro and macroevolution of sea anemone venom phenotype. ''Nat Commun''. 2023 Jan 16; '''14''' (1):249
Heteroleptic Copper(II) Complexes Containing 2'-Hydroxy-4-(Dimethylamino)Chalcone Show Strong Antiproliferative Activity. Description: Travnicek, Zdenek, et al. Heteroleptic Copper(II) Complexes Containing 2'-Hydroxy-4-(Dimethylamino)Chalcone Show Strong Antiproliferative Activity. ''Pharmaceutics''. 2023 Jan 17; '''15''' (2):
Interactions among deep-sea mussels and their epibiotic and endosymbiotic chemoautotrophic bacteria: Insights from multi-omics analysis. Description: Lin, Yi-Tao, et al. Interactions among deep-sea mussels and their epibiotic and endosymbiotic chemoautotrophic bacteria: Insights from multi-omics analysis. ''Zool Res''. 2023 Jan 18; '''44''' (1):106-125
PhaTYP: predicting the lifestyle for bacteriophages using BERT. Description: Shang, Jiayu, et al. PhaTYP: predicting the lifestyle for bacteriophages using BERT. ''Brief Bioinform''. 2023 Jan 19; '''24''' (1):
The gastrointestinal microbiome in dairy cattle is constrained by the deterministic driver of the region and the modified effect of diet. Description: Lin, Limei, et al. The gastrointestinal microbiome in dairy cattle is constrained by the deterministic driver of the region and the modified effect of diet. ''Microbiome''. 2023 Jan 20; '''11''' (1):10
Antioxidant and Anticancer Potential of the New Cu(II) Complexes Bearing Imine-Phenolate Ligands with Pendant Amine N-Donor Groups. Description: Pinheiro, Adriana Castro, et al. Antioxidant and Anticancer Potential of the New Cu(II) Complexes Bearing Imine-Phenolate Ligands with Pendant Amine N-Donor Groups. ''Pharmaceutics''. 2023 Jan 22; '''15''' (2):
The Influence of Symbiosis on the Proteome of the Exaiptasia Endosymbiont Breviolum minutum. Description: Mashini, Amirhossein Gheitanchi, et al. The Influence of Symbiosis on the Proteome of the Exaiptasia Endosymbiont Breviolum minutum. ''Microorganisms''. 2023 Jan 22; '''11''' (2):
Analysis of oxidase activity and transcriptomic changes related to cutting propagation of hybrid larch. Description: Qin, Ruofan, et al. Analysis of oxidase activity and transcriptomic changes related to cutting propagation of hybrid larch. ''Sci Rep''. 2023 Jan 24; '''13''' (1):1354
Metagenomics and metatranscriptomics reveal broadly distributed, active, novel methanotrophs in the Gulf of Mexico hypoxic zone and in the marine water column. Description: Howe, Kathryn L, et al. Metagenomics and metatranscriptomics reveal broadly distributed, active, novel methanotrophs in the Gulf of Mexico hypoxic zone and in the marine water column. ''FEMS Microbiol Ecol''. 2023 Jan 24; '''99''' (2):
Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin. Description: Jaffe, Alexander L, et al. Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin. ''Microbiome''. 2023 Jan 25; '''11''' (1):14
Studies on the Complexation of Platinum(II) by Some 4-Nitroisoxazoles and Testing the Cytotoxic Activity of the Resulting Complexes. Description: Mastalarz, Henryk, et al. Studies on the Complexation of Platinum(II) by Some 4-Nitroisoxazoles and Testing the Cytotoxic Activity of the Resulting Complexes. ''Molecules''. 2023 Jan 28; '''28''' (3):
Addressing the pervasive scarcity of structural annotation in eukaryotic algae. Description: Kwon, Taehyung, et al. Addressing the pervasive scarcity of structural annotation in eukaryotic algae. ''Sci Rep''. 2023 Jan 30; '''13''' (1):1687
PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance. Description: Biggel, Michael, et al. PorinPredict: In Silico Identification of OprD Loss from WGS Data for Improved Genotype-Phenotype Predictions of P. aeruginosa Carbapenem Resistance. ''Microbiol Spectr''. 2023 Jan 30; '''11''' (2):e0358822
The genome of sheep ked (Melophagus ovinus) reveals potential mechanisms underlying reproduction and narrower ecological niches. Description: Zhang, Qingxun, et al. The genome of sheep ked (Melophagus ovinus) reveals potential mechanisms underlying reproduction and narrower ecological niches. ''BMC Genomics''. 2023 Jan 30; '''24''' (1):54
Changes in the Gut Microbiome Associated with Intussusception in Patients with Peutz-Jeghers Syndrome. Description: Wang, Zhiqing, et al. Changes in the Gut Microbiome Associated with Intussusception in Patients with Peutz-Jeghers Syndrome. ''Microbiol Spectr''. 2023 Jan 31; '''11''' (2):e0281922
Rumen and Fecal Microbiota Characteristics of Qinchuan Cattle with Divergent Residual Feed Intake. Description: Zhou, Xiaonan, et al. Rumen and Fecal Microbiota Characteristics of Qinchuan Cattle with Divergent Residual Feed Intake. ''Microorganisms''. 2023 Jan 31; '''11''' (2):
Cd(2+) and Zn(2+) Complexes with 2,4,6-Tri(2-pyridyl)-s-Triazine and Terephthalate for Rapid, High-Capacity Adsorption of Congo Red. Description: Zhao, Yanfang, et al. Cd(2+) and Zn(2+) Complexes with 2,4,6-Tri(2-pyridyl)-s-Triazine and Terephthalate for Rapid, High-Capacity Adsorption of Congo Red. ''ChemistryOpen''. 2023 Feb; '''12''' (2):e202200176
Evolution of pathogenicity-associated genes in Rhizoctonia solani AG1-IA by genome duplication and transposon-mediated gene function alterations. Description: Francis, Aleena, et al. Evolution of pathogenicity-associated genes in Rhizoctonia solani AG1-IA by genome duplication and transposon-mediated gene function alterations. ''BMC Biol''. 2023 Feb 1; '''21''' (1):15
Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii. Description: Hasegawa, Yoshinori, et al. Genome assembly and transcriptomic analyses of the repeatedly rejuvenating jellyfish Turritopsis dohrnii. ''DNA Res''. 2023 Feb 1; '''30''' (1):
Genome-wide identification and expression analysis of the mating-responsive genes in the male accessory glands of Spodoptera litura (Lepidoptera: Noctuidae). Description: Mamtha, R, et al. Genome-wide identification and expression analysis of the mating-responsive genes in the male accessory glands of Spodoptera litura (Lepidoptera: Noctuidae). ''J Genet Eng Biotechnol''. 2023 Feb 1; '''21''' (1):11
Impact of host age on viral and bacterial communities in a waterbird population. Description: Hill, Sarah C, et al. Impact of host age on viral and bacterial communities in a waterbird population. ''ISME J''. 2023 Feb; '''17''' (2):215-226
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. Description: Healey, Adam L, et al. Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics. ''Nat Plants''. 2023 Feb; '''9''' (2):238-254
Tin Bromido Aluminate Networks with Bright Luminescence. Description: Wolf, Silke, et al. Tin Bromido Aluminate Networks with Bright Luminescence. ''ChemistryOpen''. 2023 Feb; '''12''' (2):e202200226
Tritrichomonas foetus Cell Division Involves DNA Endoreplication and Multiple Fissions. Description: Iriarte, Lucrecia S, et al. Tritrichomonas foetus Cell Division Involves DNA Endoreplication and Multiple Fissions. ''Microbiol Spectr''. 2023 Feb 2; '''11''' (2):e0325122
Chromosome-Level Genome Assembly of Herpetospermum pedunculosum (Cucurbitaceae). Description: Yang, Yixi, et al. Chromosome-Level Genome Assembly of Herpetospermum pedunculosum (Cucurbitaceae). ''Genome Biol Evol''. 2023 Feb 3; '''15''' (2):
Differentially expression analyses in fruit of cultivated and wild species of grape and peach. Description: Huang, Weijian, et al. Differentially expression analyses in fruit of cultivated and wild species of grape and peach. ''Sci Rep''. 2023 Feb 3; '''13''' (1):1997
MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. Description: Cheng, Kai, et al. MetaLab-MAG: A Metaproteomic Data Analysis Platform for Genome-Level Characterization of Microbiomes from the Metagenome-Assembled Genomes Database. ''J Proteome Res''. 2023 Feb 3; '''22''' (2):387-398
Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. Description: Liu, Xiuping, et al. Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. ''Microbiol Spectr''. 2023 Feb 6; '''11''' (2):e0424722
Heterometallic 3d-4f Alkoxide Precursors for the Synthesis of Binary Oxide Nanomaterials. Description: Petrus, Rafal, et al. Heterometallic 3d-4f Alkoxide Precursors for the Synthesis of Binary Oxide Nanomaterials. ''Inorg Chem''. 2023 Feb 6; '''62''' (5):2197-2212
Screening of Candidate Effectors from Magnaporthe oryzae by In Vitro Secretomic Analysis. Description: Li, Guanjun, et al. Screening of Candidate Effectors from Magnaporthe oryzae by In Vitro Secretomic Analysis. ''Int J Mol Sci''. 2023 Feb 6; '''24''' (4):
A nontuberculous mycobacterium could solve the mystery of the lady from the Franciscan church in Basel, Switzerland. Description: Sarhan, Mohamed S, et al. A nontuberculous mycobacterium could solve the mystery of the lady from the Franciscan church in Basel, Switzerland. ''BMC Biol''. 2023 Feb 7; '''21''' (1):9
Metagenomic Analysis of Anaerobic Microbial Communities Degrading Short-Chain Fatty Acids as Sole Carbon Sources. Description: Becker, Daniela, et al. Metagenomic Analysis of Anaerobic Microbial Communities Degrading Short-Chain Fatty Acids as Sole Carbon Sources. ''Microorganisms''. 2023 Feb 7; '''11''' (2):
Longitudinal comparison of the developing gut virome in infants and their mothers. Description: Walters, William A, et al. Longitudinal comparison of the developing gut virome in infants and their mothers. ''Cell Host Microbe''. 2023 Feb 8; '''31''' (2):187-198.e3
Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma. Description: Shirasawa, Kenta, et al. Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma. ''G3 (Bethesda)''. 2023 Feb 9; '''13''' (2):
Seasonal Changes in the Structure and Function of Gut Microbiota in the Muskrat (Ondatra zibethicus). Description: Song, Fengcheng, et al. Seasonal Changes in the Structure and Function of Gut Microbiota in the Muskrat (Ondatra zibethicus). ''Metabolites''. 2023 Feb 9; '''13''' (2):
Bile salt hydrolase in non-enterotoxigenic Bacteroides potentiates colorectal cancer. Description: Sun, Lulu, et al. Bile salt hydrolase in non-enterotoxigenic Bacteroides potentiates colorectal cancer. ''Nat Commun''. 2023 Feb 10; '''14''' (1):755
Development of unigene-derived SSR markers from RNA-seq data of Uraria lagopodioides (Fabaceae) and their application in the genus Uraria Desv. (Fabaceae). Description: Liu, Chaoyu, et al. Development of unigene-derived SSR markers from RNA-seq data of Uraria lagopodioides (Fabaceae) and their application in the genus Uraria Desv. (Fabaceae). ''BMC Plant Biol''. 2023 Feb 10; '''23''' (1):87
XY sex determination in a cnidarian. Description: Chen, Ruoxu, et al. XY sex determination in a cnidarian. ''BMC Biol''. 2023 Feb 13; '''21''' (1):32
Characterization of Gut Microbiota Compositions along the Intestinal Tract in CD163/pAPN Double Knockout Piglets and Their Potential Roles in Iron Absorption. Description: Zhang, Xiu-Ling, et al. Characterization of Gut Microbiota Compositions along the Intestinal Tract in CD163/pAPN Double Knockout Piglets and Their Potential Roles in Iron Absorption. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0190622
Characterizations of the Gut Bacteriome, Mycobiome, and Virome in Patients with Osteoarthritis. Description: Chen, Changming, et al. Characterizations of the Gut Bacteriome, Mycobiome, and Virome in Patients with Osteoarthritis. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0171122
Differential Expression Genes of the Head Kidney and Spleen in Streptococcus iniae-Infected East Asian Fourfinger Threadfin Fish (Eleutheronema tetradactylum). Description: Maekawa, Shun, et al. Differential Expression Genes of the Head Kidney and Spleen in Streptococcus iniae-Infected East Asian Fourfinger Threadfin Fish (Eleutheronema tetradactylum). ''Int J Mol Sci''. 2023 Feb 14; '''24''' (4):
Dysbiosis of Oral Microbiota and Metabolite Profiles Associated with Type 2 Diabetes Mellitus. Description: Li, Yujiao, et al. Dysbiosis of Oral Microbiota and Metabolite Profiles Associated with Type 2 Diabetes Mellitus. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0379622
Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. Description: Busi, Susheel Bhanu, et al. Glacier-Fed Stream Biofilms Harbor Diverse Resistomes and Biosynthetic Gene Clusters. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0406922
Nitrate Nitrogen and pH Correlate with Changes in Rhizosphere Microbial Community Assemblages during Invasion of Ambrosia artemisiifolia and Bidens pilosa. Description: Wang, Liting, et al. Nitrate Nitrogen and pH Correlate with Changes in Rhizosphere Microbial Community Assemblages during Invasion of Ambrosia artemisiifolia and Bidens pilosa. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0364922
Riddles of Lost City: Chemotrophic Prokaryotes Drives Carbon, Sulfur, and Nitrogen Cycling at an Extinct Cold Seep, South China Sea. Description: Chen, Yu, et al. Riddles of Lost City: Chemotrophic Prokaryotes Drives Carbon, Sulfur, and Nitrogen Cycling at an Extinct Cold Seep, South China Sea. ''Microbiol Spectr''. 2023 Feb 14; '''11''' (1):e0333822
The human gut microbiome of athletes: metagenomic and metabolic insights. Description: Fontana, Federico, et al. The human gut microbiome of athletes: metagenomic and metabolic insights. ''Microbiome''. 2023 Feb 14; '''11''' (1):27
A New Concept of Enhancing the Anticancer Activity of Manganese Terpyridine Complex by Oxygen-Containing Substituent Modification. Description: Li, Jiahe, et al. A New Concept of Enhancing the Anticancer Activity of Manganese Terpyridine Complex by Oxygen-Containing Substituent Modification. ''Int J Mol Sci''. 2023 Feb 15; '''24''' (4):
Anti-Hyperuricemic Effect of Anserine Based on the Gut-Kidney Axis: Integrated Analysis of Metagenomics and Metabolomics. Description: Halimulati, Mairepaiti, et al. Anti-Hyperuricemic Effect of Anserine Based on the Gut-Kidney Axis: Integrated Analysis of Metagenomics and Metabolomics. ''Nutrients''. 2023 Feb 15; '''15''' (4):
Ion-Selective Assembly of Supertetrahedral Selenido Germanate Clusters for Alkali Metal Ion Capture and Separation. Description: Wu, Zhou, et al. Ion-Selective Assembly of Supertetrahedral Selenido Germanate Clusters for Alkali Metal Ion Capture and Separation. ''J Am Chem Soc''. 2023 Feb 15; '''145''' (6):3802-3811
Orthologs of Human-Disease-Associated Genes in Plants Are Involved in Regulating Leaf Senescence. Description: Wang, Hou-Ling, et al. Orthologs of Human-Disease-Associated Genes in Plants Are Involved in Regulating Leaf Senescence. ''Life (Basel)''. 2023 Feb 16; '''13''' (2):
A Promising 1,3,5-Triazine-Based Anion Exchanger for Perrhenate Binding: Crystal Structures of Its Chloride, Nitrate and Perrhenate Salts. Description: Zakharov, Valery N, et al. A Promising 1,3,5-Triazine-Based Anion Exchanger for Perrhenate Binding: Crystal Structures of Its Chloride, Nitrate and Perrhenate Salts. ''Molecules''. 2023 Feb 17; '''28''' (4):
Whole-Genome Comparison Reveals Structural Variations behind Heading Leaf Trait in Brassica oleracea. Description: Ji, Gaoxiang, et al. Whole-Genome Comparison Reveals Structural Variations behind Heading Leaf Trait in Brassica oleracea. ''Int J Mol Sci''. 2023 Feb 17; '''24''' (4):
Computational Insight into Intraspecies Distinctions in Pseudoalteromonas distincta: Carotenoid-like Synthesis Traits and Genomic Heterogeneity. Description: Balabanova, Larissa, et al. Computational Insight into Intraspecies Distinctions in Pseudoalteromonas distincta: Carotenoid-like Synthesis Traits and Genomic Heterogeneity. ''Int J Mol Sci''. 2023 Feb 19; '''24''' (4):
Metagenomes from Coastal Sediments of Kuwait: Insights into the Microbiome, Metabolic Functions and Resistome. Description: Habibi, Nazima, et al. Metagenomes from Coastal Sediments of Kuwait: Insights into the Microbiome, Metabolic Functions and Resistome. ''Microorganisms''. 2023 Feb 20; '''11''' (2):
Diversity and Prevalence of Clostridium innocuum in the Human Gut Microbiota. Description: Bhattacharjee, Disha, et al. Diversity and Prevalence of Clostridium innocuum in the Human Gut Microbiota. ''mSphere''. 2023 Feb 21; '''8''' (1):e0056922
Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype. Description: Younginger, Brett S, et al. Enrichment of oral-derived bacteria in inflamed colorectal tumors and distinct associations of Fusobacterium in the mesenchymal subtype. ''Cell Rep Med''. 2023 Feb 21; '''4''' (2):100920
Exploring the Astrovirome of Shellfish Matrices Using Nanopore Sequencing. Description: Beikpour, Farzad, et al. Exploring the Astrovirome of Shellfish Matrices Using Nanopore Sequencing. ''Vet Sci''. 2023 Feb 21; '''10''' (3):
A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics. Description: Haro-Moreno, Jose M, et al. A novel and diverse group of Candidatus Patescibacteria from bathypelagic Lake Baikal revealed through long-read metagenomics. ''Environ Microbiome''. 2023 Feb 23; '''18''' (1):12
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli. Description: Arrieta-Ortiz, Mario L, et al. Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli. ''mSystems''. 2023 Feb 23; '''8''' (1):e0090422
Diverse Methylmercury (MeHg) Producers and Degraders Inhabit Acid Mine Drainage Sediments, but Few Taxa Correlate with MeHg Accumulation. Description: Zheng, Jin, et al. Diverse Methylmercury (MeHg) Producers and Degraders Inhabit Acid Mine Drainage Sediments, but Few Taxa Correlate with MeHg Accumulation. ''mSystems''. 2023 Feb 23; '''8''' (1):e0073622
Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. Description: Fontana, Federico, et al. Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota and Implication for Current Regulatory Scheme. ''mSystems''. 2023 Feb 23; '''8''' (1):e0106822
Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes. Description: Marasco, Ramona, et al. Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes. ''Nat Commun''. 2023 Feb 24; '''14''' (1):1045
Microbial Virulence Factors, Antimicrobial Resistance Genes, Metabolites, and Synthetic Chemicals in Cabins of Commercial Aircraft. Description: Fu, Xi, et al. Microbial Virulence Factors, Antimicrobial Resistance Genes, Metabolites, and Synthetic Chemicals in Cabins of Commercial Aircraft. ''Metabolites''. 2023 Feb 24; '''13''' (3):
Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps. Description: Dong, Xiyang, et al. Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps. ''Nat Commun''. 2023 Feb 28; '''14''' (1):1127
Plasmid-Encoded Traits Vary across Environments. Description: Finks, Sarai S, et al. Plasmid-Encoded Traits Vary across Environments. ''mBio''. 2023 Feb 28; '''14''' (1):e0319122
Polygenic adaptation from standing genetic variation allows rapid ecotype formation. Description: Fuhrmann, Nico, et al. Polygenic adaptation from standing genetic variation allows rapid ecotype formation. ''Elife''. 2023 Feb 28; '''12''':
Taxonomic and Metagenomic Analyses Define the Development of the Microbiota in the Chick. Description: Bogomolnaya, Lydia, et al. Taxonomic and Metagenomic Analyses Define the Development of the Microbiota in the Chick. ''mBio''. 2023 Feb 28; '''14''' (1):e0244422
The Early Microbial Colonizers of a Short-Lived Volcanic Island in the Kingdom of Tonga. Description: Dragone, Nicholas B, et al. The Early Microbial Colonizers of a Short-Lived Volcanic Island in the Kingdom of Tonga. ''mBio''. 2023 Feb 28; '''14''' (1):e0331322
A genome sequence for Biomphalaria pfeifferi, the major vector snail for the human-infecting parasite Schistosoma mansoni. Description: Bu, Lijing, et al. A genome sequence for Biomphalaria pfeifferi, the major vector snail for the human-infecting parasite Schistosoma mansoni. ''PLoS Negl Trop Dis''. 2023 Mar; '''17''' (3):e0011208
Allelic diversity uncovers protein domains contributing to the emergence of antimicrobial resistance. Description: Grant, Trudy-Ann, et al. Allelic diversity uncovers protein domains contributing to the emergence of antimicrobial resistance. ''PLoS Genet''. 2023 Mar; '''19''' (3):e1010490
Annelid functional genomics reveal the origins of bilaterian life cycles. Description: Martin-Zamora, Francisco M, et al. Annelid functional genomics reveal the origins of bilaterian life cycles. ''Nature''. 2023 Mar; '''615''' (7950):105-110
Genetic engineering of complex feed enzymes into barley seed for direct utilization in animal feedstuff. Description: Peng, Ri-He, et al. Genetic engineering of complex feed enzymes into barley seed for direct utilization in animal feedstuff. ''Plant Biotechnol J''. 2023 Mar; '''21''' (3):560-573
Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. Description: Zhang, Qijun, et al. Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut. ''Nat Microbiol''. 2023 Mar; '''8''' (3):424-440
Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms. Description: Kurotani, Ken-Ichi, et al. Genome Sequence and Analysis of Nicotiana benthamiana, the Model Plant for Interactions between Organisms. ''Plant Cell Physiol''. 2023 Mar 1; '''64''' (2):248-257
Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei. Description: Billington, Karen, et al. Genome-wide subcellular protein map for the flagellate parasite Trypanosoma brucei. ''Nat Microbiol''. 2023 Mar; '''8''' (3):533-547
Highly contiguous genomes of human clinical isolates of Giardia duodenalis reveal assemblage- and sub-assemblage-specific presence-absence variation in protein-coding genes. Description: Klotz, Christian, et al. Highly contiguous genomes of human clinical isolates of Giardia duodenalis reveal assemblage- and sub-assemblage-specific presence-absence variation in protein-coding genes. ''Microb Genom''. 2023 Mar; '''9''' (3):
Insights into the genomic evolution and the alkali tolerance mechanisms of Agaricus sinodeliciosus by comparative genomic and transcriptomic analyses. Description: Ling, Zhi-Lin, et al. Insights into the genomic evolution and the alkali tolerance mechanisms of Agaricus sinodeliciosus by comparative genomic and transcriptomic analyses. ''Microb Genom''. 2023 Mar; '''9''' (3):
Network expansion of genetic associations defines a pleiotropy map of human cell biology. Description: Barrio-Hernandez, Inigo, et al. Network expansion of genetic associations defines a pleiotropy map of human cell biology. ''Nat Genet''. 2023 Mar; '''55''' (3):389-398
Population-level impacts of antibiotic usage on the human gut microbiome. Description: Lee, Kihyun, et al. Population-level impacts of antibiotic usage on the human gut microbiome. ''Nat Commun''. 2023 Mar 2; '''14''' (1):1191
Chromosome-level Genome Assembly of Euphorbia peplus, a Model System for Plant Latex, Reveals that Relative Lack of Ty3 Transposons Contributed to Its Small Genome Size. Description: Johnson, Arielle R, et al. Chromosome-level Genome Assembly of Euphorbia peplus, a Model System for Plant Latex, Reveals that Relative Lack of Ty3 Transposons Contributed to Its Small Genome Size. ''Genome Biol Evol''. 2023 Mar 3; '''15''' (3):
Genomic Characterization and Wetland Occurrence of a Novel Campylobacter Isolate from Canada Geese. Description: Linz, David M, et al. Genomic Characterization and Wetland Occurrence of a Novel Campylobacter Isolate from Canada Geese. ''Microorganisms''. 2023 Mar 3; '''11''' (3):
OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information. Description: Watanabe, Tomoaki, et al. OrthoPhy: A Program to Construct Ortholog Data Sets Using Taxonomic Information. ''Genome Biol Evol''. 2023 Mar 3; '''15''' (3):
Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in the Ascomycota. Description: Hill, Rowena, et al. Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in the Ascomycota. ''Genome Biol Evol''. 2023 Mar 3; '''15''' (3):
Genome Size Changes by Duplication, Divergence, and Insertion in Caenorhabditis Worms. Description: Adams, Paula E, et al. Genome Size Changes by Duplication, Divergence, and Insertion in Caenorhabditis Worms. ''Mol Biol Evol''. 2023 Mar 4; '''40''' (3):
Trophic level and proteobacteria abundance drive antibiotic resistance levels in fish from coastal New England. Description: Korry, Benjamin J, et al. Trophic level and proteobacteria abundance drive antibiotic resistance levels in fish from coastal New England. ''Anim Microbiome''. 2023 Mar 6; '''5''' (1):16
Exploring the longer-term impact of the COVID-19 pandemic on physical and mental health of people with inflammatory rheumatic diseases: a cross-sectional survey. Description: Hider, Samantha, et al. Exploring the longer-term impact of the COVID-19 pandemic on physical and mental health of people with inflammatory rheumatic diseases: a cross-sectional survey. ''Clin Rheumatol''. 2023 Mar 7; 1-7
LED omics in Rocket Salad (Diplotaxis tenuifolia): Comparative Analysis in Different Light-Emitting Diode (LED) Spectrum and Energy Consumption. Description: Tsaballa, Aphrodite, et al. LED omics in Rocket Salad (Diplotaxis tenuifolia): Comparative Analysis in Different Light-Emitting Diode (LED) Spectrum and Energy Consumption. ''Plants (Basel)''. 2023 Mar 7; '''12''' (6):
Rumen microbial-driven metabolite from grazing lambs potentially regulates body fatty acid metabolism by lipid-related genes in liver. Description: Li, Zhen, et al. Rumen microbial-driven metabolite from grazing lambs potentially regulates body fatty acid metabolism by lipid-related genes in liver. ''J Anim Sci Biotechnol''. 2023 Mar 7; '''14''' (1):39
Genome Analysis of Pseudomonas aeruginosa Strains from Chronically Infected Patients with High Levels of Persister Formation. Description: Baiomy, Amr A, et al. Genome Analysis of Pseudomonas aeruginosa Strains from Chronically Infected Patients with High Levels of Persister Formation. ''Pathogens''. 2023 Mar 8; '''12''' (3):
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes. Description: Inda-Diaz, Juan Salvador, et al. Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes. ''Microbiome''. 2023 Mar 8; '''11''' (1):44
Development of the oral resistome during the first decade of life. Description: Sukumar, Smitha, et al. Development of the oral resistome during the first decade of life. ''Nat Commun''. 2023 Mar 9; '''14''' (1):1291
The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish. Description: Moore, Billy, et al. The chromosome-scale genome assembly of the yellowtail clownfish Amphiprion clarkii provides insights into the melanic pigmentation of anemonefish. ''G3 (Bethesda)''. 2023 Mar 9; '''13''' (3):
Use of Shotgun Metagenomics to Assess the Microbial Diversity and Hydrocarbons Degrading Functions of Auto-Mechanic Workshops Soils Polluted with Gasoline and Diesel Fuel. Description: Goma-Tchimbakala, Emerance Jessica Claire D'Assise, et al. Use of Shotgun Metagenomics to Assess the Microbial Diversity and Hydrocarbons Degrading Functions of Auto-Mechanic Workshops Soils Polluted with Gasoline and Diesel Fuel. ''Microorganisms''. 2023 Mar 10; '''11''' (3):
Changes in community structures and functions of the gut microbiomes of deep-sea cold seep mussels during in situ transplantation experiment. Description: Xiao, Yao, et al. Changes in community structures and functions of the gut microbiomes of deep-sea cold seep mussels during in situ transplantation experiment. ''Anim Microbiome''. 2023 Mar 11; '''5''' (1):17
Comprehensive genome analysis of Burkholderia contaminans SK875, a quorum-sensing strain isolated from the swine. Description: Kim, Eiseul, et al. Comprehensive genome analysis of Burkholderia contaminans SK875, a quorum-sensing strain isolated from the swine. ''AMB Express''. 2023 Mar 11; '''13''' (1):30
A Comprehensive Investigation into the Crystallology, Molecule, and Quantum Chemistry Properties of Two New Hydrous Long-Chain Dibasic Ammonium Salts C(n)H(2n+8)N(2)O(6) (n = 35 and 37). Description: Ke, Zengbo, et al. A Comprehensive Investigation into the Crystallology, Molecule, and Quantum Chemistry Properties of Two New Hydrous Long-Chain Dibasic Ammonium Salts C(n)H(2n+8)N(2)O(6) (n = 35 and 37). ''Int J Mol Sci''. 2023 Mar 13; '''24''' (6):
A reference-grade genome assembly for Astragalus mongholicus and insights into the biosynthesis and high accumulation of triterpenoids and flavonoids in its roots. Description: Chen, Yi, et al. A reference-grade genome assembly for Astragalus mongholicus and insights into the biosynthesis and high accumulation of triterpenoids and flavonoids in its roots. ''Plant Commun''. 2023 Mar 13; '''4''' (2):100469
Aspergillus fumigatus Can Display Persistence to the Fungicidal Drug Voriconazole. Description: Scott, Jennifer, et al. Aspergillus fumigatus Can Display Persistence to the Fungicidal Drug Voriconazole. ''Microbiol Spectr''. 2023 Mar 13; '''11''' (2):e0477022
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold. Description: Pei, Jimin, et al. AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold. ''Database (Oxford)''. 2023 Mar 14; '''2023''':
A holobiont approach towards polysaccharide degradation by the highly compartmentalised gut system of the soil-feeding higher termite Labiotermes labralis. Description: Marynowska, Martyna, et al. A holobiont approach towards polysaccharide degradation by the highly compartmentalised gut system of the soil-feeding higher termite Labiotermes labralis. ''BMC Genomics''. 2023 Mar 15; '''24''' (1):115
Combining Metabolomics and Transcriptomics to Reveal the Regulatory Mechanism of Taproot Enlargement in Panax ginseng. Description: Zhang, Meng, et al. Combining Metabolomics and Transcriptomics to Reveal the Regulatory Mechanism of Taproot Enlargement in Panax ginseng. ''Int J Mol Sci''. 2023 Mar 15; '''24''' (6):
Low dissolved oxygen supply functions as a global regulator of the growth and metabolism of Aurantiochytrium sp. PKU#Mn16 in the early stages of docosahexaenoic acid fermentation. Description: Liu, Lu, et al. Low dissolved oxygen supply functions as a global regulator of the growth and metabolism of Aurantiochytrium sp. PKU#Mn16 in the early stages of docosahexaenoic acid fermentation. ''Microb Cell Fact''. 2023 Mar 15; '''22''' (1):52
Molecular docking with SARS-CoV-2 and potential drug property of a bioactive novel Zn(II) polymer: A combined experimental and theoretical study. Description: Nashre-Ul-Islam, Swah Mohd, et al. Molecular docking with SARS-CoV-2 and potential drug property of a bioactive novel Zn(II) polymer: A combined experimental and theoretical study. ''Polyhedron''. 2023 Mar 15; '''233''': 116304
Unravelling the limb regeneration mechanisms of Polypedates maculatus, a sub-tropical frog, by transcriptomics. Description: Mahapatra, Cuckoo, et al. Unravelling the limb regeneration mechanisms of Polypedates maculatus, a sub-tropical frog, by transcriptomics. ''BMC Genomics''. 2023 Mar 16; '''24''' (1):122
A Global Survey of the Full-Length Transcriptome of Apis mellifera by Single-Molecule Long-Read Sequencing. Description: Zheng, Shuang-Yan, et al. A Global Survey of the Full-Length Transcriptome of Apis mellifera by Single-Molecule Long-Read Sequencing. ''Int J Mol Sci''. 2023 Mar 18; '''24''' (6):
Transcriptomic and Metabolomic Profiles Provide Insights into the Red-Stipe Symptom of Morel Fruiting Bodies. Description: Yang, Chi, et al. Transcriptomic and Metabolomic Profiles Provide Insights into the Red-Stipe Symptom of Morel Fruiting Bodies. ''J Fungi (Basel)''. 2023 Mar 18; '''9''' (3):
Characterization of a novel papillomavirus identified from a whale (Delphinapterus leucas) pharyngeal metagenomic library. Description: Lu, Xiang, et al. Characterization of a novel papillomavirus identified from a whale (Delphinapterus leucas) pharyngeal metagenomic library. ''Virol J''. 2023 Mar 20; '''20''' (1):48
Chromosome-Level Genome Assembly of Papilio elwesi Leech, 1889 (Lepidoptera: Papilionidae). Description: Pan, Zhixiang, et al. Chromosome-Level Genome Assembly of Papilio elwesi Leech, 1889 (Lepidoptera: Papilionidae). ''Insects''. 2023 Mar 21; '''14''' (3):
CT-derived fractional flow reserve for prediction of major adverse cardiovascular events in diabetic patients. Description: Lan, Ziting, et al. CT-derived fractional flow reserve for prediction of major adverse cardiovascular events in diabetic patients. ''Cardiovasc Diabetol''. 2023 Mar 21; '''22''' (1):65
Genome mining unveils a class of ribosomal peptides with two amino termini. Description: Ren, Hengqian, et al. Genome mining unveils a class of ribosomal peptides with two amino termini. ''Nat Commun''. 2023 Mar 23; '''14''' (1):1624
Hybrid De Novo Whole-Genome Assembly, Annotation, and Identification of Secondary Metabolite Gene Clusters in the Ex-Type Strain of Chrysosporium keratinophilum. Description: Granados-Casas, Alan Omar, et al. Hybrid De Novo Whole-Genome Assembly, Annotation, and Identification of Secondary Metabolite Gene Clusters in the Ex-Type Strain of Chrysosporium keratinophilum. ''J Fungi (Basel)''. 2023 Mar 23; '''9''' (4):
Differential effects of Bacillus subtilis- and Bacillus licheniformis-fermented products on growth performance, intestinal morphology, intestinal antioxidant and barrier function gene expression, cecal microbiota community, and microbial carbohydra... Description: Chen, Yu-Wei, et al. Differential effects of Bacillus subtilis- and Bacillus licheniformis-fermented products on growth performance, intestinal morphology, intestinal antioxidant and barrier function gene expression, cecal microbiota community, and microbial carbohydrate-active enzyme composition in broilers. ''Poult Sci''. 2023 Mar 24; '''102''' (6):102670
Metagenome Analysis Identifies Microbial Shifts upon Deoxynivalenol Exposure and Post-Exposure Recovery in the Mouse Gut. Description: Jin, Jing, et al. Metagenome Analysis Identifies Microbial Shifts upon Deoxynivalenol Exposure and Post-Exposure Recovery in the Mouse Gut. ''Toxins (Basel)''. 2023 Mar 25; '''15''' (4):
Comparison of gut viral communities in children under 5 years old and newborns. Description: Li, Hong, et al. Comparison of gut viral communities in children under 5 years old and newborns. ''Virol J''. 2023 Mar 27; '''20''' (1):52
Soil contamination in nearby natural areas mirrors that in urban greenspaces worldwide. Description: Liu, Yu-Rong, et al. Soil contamination in nearby natural areas mirrors that in urban greenspaces worldwide. ''Nat Commun''. 2023 Mar 27; '''14''' (1):1706
Soil conditions and the plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata 'Chachi'. Description: Su, Jianmu, et al. Soil conditions and the plant microbiome boost the accumulation of monoterpenes in the fruit of Citrus reticulata 'Chachi'. ''Microbiome''. 2023 Mar 28; '''11''' (1):61
Viral and Bacterial Communities Collaborate through Complementary Assembly Processes in Soil to Survive Organochlorine Contamination. Description: Yuan, Shujian, et al. Viral and Bacterial Communities Collaborate through Complementary Assembly Processes in Soil to Survive Organochlorine Contamination. ''Appl Environ Microbiol''. 2023 Mar 29; '''89''' (3):e0181022
Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis. Description: Nelkner, Johanna, et al. Abundance, classification and genetic potential of Thaumarchaeota in metagenomes of European agricultural soils: a meta-analysis. ''Environ Microbiome''. 2023 Mar 30; '''18''' (1):26
A First Insight into the Microbial and Viral Communities of Comau Fjord-A Unique Human-Impacted Ecosystem in Patagonia (42( composite function) S). Description: Guajardo-Leiva, Sergio, et al. A First Insight into the Microbial and Viral Communities of Comau Fjord-A Unique Human-Impacted Ecosystem in Patagonia (42( composite function) S). ''Microorganisms''. 2023 Mar 30; '''11''' (4):
Saccharopolyspora sp. NFXS83 in Marine Biotechnological Applications: From Microalgae Growth Promotion to the Production of Secondary Metabolites. Description: Bertrand, Constanca D F, et al. Saccharopolyspora sp. NFXS83 in Marine Biotechnological Applications: From Microalgae Growth Promotion to the Production of Secondary Metabolites. ''Microorganisms''. 2023 Mar 30; '''11''' (4):
Novel evolved Yarrowia lipolytica strains for enhanced growth and lipid content under high concentrations of crude glycerol. Description: Tsirigka, Asimina, et al. Novel evolved Yarrowia lipolytica strains for enhanced growth and lipid content under high concentrations of crude glycerol. ''Microb Cell Fact''. 2023 Mar 31; '''22''' (1):62
Adeno-Associated Virus 2 and Human Adenovirus F41 in Wastewater during Outbreak of Severe Acute Hepatitis in Children, Ireland. Description: Martin, Niamh A, et al. Adeno-Associated Virus 2 and Human Adenovirus F41 in Wastewater during Outbreak of Severe Acute Hepatitis in Children, Ireland. ''Emerg Infect Dis''. 2023 Apr; '''29''' (4):751-760
A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes. Description: Molari, Massimiliano, et al. A hydrogenotrophic Sulfurimonas is globally abundant in deep-sea oxygen-saturated hydrothermal plumes. ''Nat Microbiol''. 2023 Apr; '''8''' (4):651-665
Altered vaginal eukaryotic virome is associated with different cervical disease status. Description: Li, Yanpeng, et al. Altered vaginal eukaryotic virome is associated with different cervical disease status. ''Virol Sin''. 2023 Apr; '''38''' (2):184-197
A survey on antimicrobial resistance genes of frequently used probiotic bacteria, 1901 to 2022. Description: Toth, Adrienn Greta, et al. A survey on antimicrobial resistance genes of frequently used probiotic bacteria, 1901 to 2022. ''Euro Surveill''. 2023 Apr; '''28''' (14):
Comparative transcriptomics of aphid species that diverged > 22 MYA reveals genes that are important for the maintenance of their symbiosis. Description: Argandona, Jacob A, et al. Comparative transcriptomics of aphid species that diverged > 22 MYA reveals genes that are important for the maintenance of their symbiosis. ''Sci Rep''. 2023 Apr 1; '''13''' (1):5341
Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing. Description: Sun, Yuhong, et al. Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing. ''Genome Res''. 2023 Apr; '''33''' (4):612-621
Molecular hydrogen in seawater supports growth of diverse marine bacteria. Description: Lappan, Rachael, et al. Molecular hydrogen in seawater supports growth of diverse marine bacteria. ''Nat Microbiol''. 2023 Apr; '''8''' (4):581-595
Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert. Description: Najjari, Afef, et al. Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert. ''Genetica''. 2023 Apr; '''151''' (2):133-152
RNA virus discoveries in the electric ant, Wasmannia auropunctata. Description: Valles, Steven M, et al. RNA virus discoveries in the electric ant, Wasmannia auropunctata. ''Virus Genes''. 2023 Apr; '''59''' (2):276-289
Soil microbial gene expression in an agricultural ecosystem varies with time and neonicotinoid seed treatments. Description: Parizadeh, Mona, et al. Soil microbial gene expression in an agricultural ecosystem varies with time and neonicotinoid seed treatments. ''Microbiology (Reading)''. 2023 Apr; '''169''' (4):
Structural basis of the inhibition of cystathionine gamma-lyase from Toxoplasma gondii by propargylglycine and cysteine. Description: Fernandez-Rodriguez, Carmen, et al. Structural basis of the inhibition of cystathionine gamma-lyase from Toxoplasma gondii by propargylglycine and cysteine. ''Protein Sci''. 2023 Apr; '''32''' (4):e4619
Systematic comparison of unilamellar vesicles reveals that archaeal core lipid membranes are more permeable than bacterial membranes. Description: Lapinska, Urszula, et al. Systematic comparison of unilamellar vesicles reveals that archaeal core lipid membranes are more permeable than bacterial membranes. ''PLoS Biol''. 2023 Apr; '''21''' (4):e3002048
Virome diversity of ticks feeding on domestic mammals in China. Description: Yang, Zijun, et al. Virome diversity of ticks feeding on domestic mammals in China. ''Virol Sin''. 2023 Apr; '''38''' (2):208-221
Ecological change of the gut microbiota during pregnancy and progression to dyslipidemia. Description: Yang, Xu, et al. Ecological change of the gut microbiota during pregnancy and progression to dyslipidemia. ''NPJ Biofilms Microbiomes''. 2023 Apr 3; '''9''' (1):14
Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions. Description: Waldbieser, Geoffrey C, et al. Reference genomes of channel catfish and blue catfish reveal multiple pericentric chromosome inversions. ''BMC Biol''. 2023 Apr 3; '''21''' (1):67
Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates. Description: Chen, Wenbing, et al. Stop or Not: Genome-Wide Profiling of Reassigned Stop Codons in Ciliates. ''Mol Biol Evol''. 2023 Apr 4; '''40''' (4):
Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes. Description: Qian, Lu, et al. Vertically stratified methane, nitrogen and sulphur cycling and coupling mechanisms in mangrove sediment microbiomes. ''Microbiome''. 2023 Apr 5; '''11''' (1):71
Combined PacBio Iso-Seq and Illumina RNA-Seq Analysis of the Tuta absoluta (Meyrick) Transcriptome and Cytochrome P450 Genes. Description: Liu, Min, et al. Combined PacBio Iso-Seq and Illumina RNA-Seq Analysis of the Tuta absoluta (Meyrick) Transcriptome and Cytochrome P450 Genes. ''Insects''. 2023 Apr 6; '''14''' (4):
Land use modification causes slow, but predictable, change in soil microbial community composition and functional potential. Description: Louisson, Z, et al. Land use modification causes slow, but predictable, change in soil microbial community composition and functional potential. ''Environ Microbiome''. 2023 Apr 6; '''18''' (1):30
Genome Mining and Screening for Secondary Metabolite Production in the Endophytic Fungus Dactylonectria alcacerensis CT-6. Description: Ming, Qianliang, et al. Genome Mining and Screening for Secondary Metabolite Production in the Endophytic Fungus Dactylonectria alcacerensis CT-6. ''Microorganisms''. 2023 Apr 8; '''11''' (4):
Advances in Clinical Cardiology 2022: A Summary of Key Clinical Trials. Description: Savage, Patrick, et al. Advances in Clinical Cardiology 2022: A Summary of Key Clinical Trials. ''Adv Ther''. 2023 Apr 13; 1-31
Development of the High-Affinity Carborane-Based Cannabinoid Receptor Type 2 PET Ligand [(18)F]LUZ5-d(8). Description: Ueberham, Lea, et al. Development of the High-Affinity Carborane-Based Cannabinoid Receptor Type 2 PET Ligand [(18)F]LUZ5-d(8). ''J Med Chem''. 2023 Apr 13; '''66''' (7):5242-5260
Children with autism show differences in the gut DNA virome compared to non-autistic children: a case control study. Description: Qu, Aina, et al. Children with autism show differences in the gut DNA virome compared to non-autistic children: a case control study. ''BMC Pediatr''. 2023 Apr 14; '''23''' (1):174
Histopathological Analysis of Selected Organs of Rats with Congenital Babesiosis Caused by Babesia microti. Description: Jasik, Krzysztof, et al. Histopathological Analysis of Selected Organs of Rats with Congenital Babesiosis Caused by Babesia microti. ''Vet Sci''. 2023 Apr 14; '''10''' (4):
Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China. Description: Liu, Yanchao, et al. Differences in gut microbiota and its metabolic function among different fasting plasma glucose groups in Mongolian population of China. ''BMC Microbiol''. 2023 Apr 15; '''23''' (1):102
Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses. Description: Bellas, Christopher, et al. Large-scale invasion of unicellular eukaryotic genomes by integrating DNA viruses. ''Proc Natl Acad Sci U S A''. 2023 Apr 18; '''120''' (16):e2300465120
Genomic Analysis of Infectious Bursal Disease Virus in Nigeria: Identification of Unique Mutations of Yet Unknown Biological Functions in Both Segments A and B. Description: Nwagbo, Ijeoma, et al. Genomic Analysis of Infectious Bursal Disease Virus in Nigeria: Identification of Unique Mutations of Yet Unknown Biological Functions in Both Segments A and B. ''Vaccines (Basel)''. 2023 Apr 19; '''11''' (4):
Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. Description: Gao, Ping, et al. Genomic insight of sulfate reducing bacterial genus Desulfofaba reveals their metabolic versatility in biogeochemical cycling. ''BMC Genomics''. 2023 Apr 19; '''24''' (1):209
Cation Charge as a Tool to Change Dimensionality in Organic-Inorganic Hybrids Based on Copper Thiocyanate Templated by 1,4-Diazabicyclo[2.2.2]octane. Description: Goreshnik, Evgeny, et al. Cation Charge as a Tool to Change Dimensionality in Organic-Inorganic Hybrids Based on Copper Thiocyanate Templated by 1,4-Diazabicyclo[2.2.2]octane. ''Molecules''. 2023 Apr 20; '''28''' (8):
First Isolation and Genome Sequence Analysis of West Nile Virus in Mosquitoes in Brazil. Description: Neto, Joaquim Pinto Nunes, et al. First Isolation and Genome Sequence Analysis of West Nile Virus in Mosquitoes in Brazil. ''Trop Med Infect Dis''. 2023 Apr 20; '''8''' (4):
Integrated Analysis of miRNAome and Transcriptome Identify Regulators of Elm Seed Aging. Description: Ye, Tiantian, et al. Integrated Analysis of miRNAome and Transcriptome Identify Regulators of Elm Seed Aging. ''Plants (Basel)''. 2023 Apr 20; '''12''' (8):
Metagenome and metabolome insights into the energy compensation and exogenous toxin degradation of gut microbiota in high-altitude rhesus macaques (Macaca mulatta). Description: Zhao, Junsong, et al. Metagenome and metabolome insights into the energy compensation and exogenous toxin degradation of gut microbiota in high-altitude rhesus macaques (Macaca mulatta). ''NPJ Biofilms Microbiomes''. 2023 Apr 20; '''9''' (1):20
Swine farm groundwater is a hidden hotspot for antibiotic-resistant pathogenic Acinetobacter. Description: Gao, Fang-Zhou, et al. Swine farm groundwater is a hidden hotspot for antibiotic-resistant pathogenic Acinetobacter. ''ISME Commun''. 2023 Apr 20; '''3''' (1):34
The Colorectal Cancer Gut Environment Regulates Activity of the Microbiome and Promotes the Multidrug Resistant Phenotype of ESKAPE and Other Pathogens. Description: Lamaudiere, Matthew T F, et al. The Colorectal Cancer Gut Environment Regulates Activity of the Microbiome and Promotes the Multidrug Resistant Phenotype of ESKAPE and Other Pathogens. ''mSphere''. 2023 Apr 20; '''8''' (2):e0062622
The Colorectal Cancer Microbiota Alter Their Transcriptome To Adapt to the Acidity, Reactive Oxygen Species, and Metabolite Availability of Gut Microenvironments. Description: Lamaudiere, Matthew T F, et al. The Colorectal Cancer Microbiota Alter Their Transcriptome To Adapt to the Acidity, Reactive Oxygen Species, and Metabolite Availability of Gut Microenvironments. ''mSphere''. 2023 Apr 20; '''8''' (2):e0062722
Gut microbiome responds compositionally and functionally to the seasonal diet variations in wild gibbons. Description: Li, Qi, et al. Gut microbiome responds compositionally and functionally to the seasonal diet variations in wild gibbons. ''NPJ Biofilms Microbiomes''. 2023 Apr 21; '''9''' (1):21
Genome Re-Annotation and Transcriptome Analyses of Sanghuangporus sanghuang. Description: Shen, Zi-Qi, et al. Genome Re-Annotation and Transcriptome Analyses of Sanghuangporus sanghuang. ''J Fungi (Basel)''. 2023 Apr 23; '''9''' (5):
Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment. Description: Hao, Zikai, et al. Positive mood-related gut microbiota in a long-term closed environment: a multiomics study based on the "Lunar Palace 365" experiment. ''Microbiome''. 2023 Apr 24; '''11''' (1):88
Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. Description: Barnett, Samuel E, et al. Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing. ''mBio''. 2023 Apr 25; '''14''' (2):e0358422
A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome. Description: Zhang, Dengwei, et al. A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome. ''Microbiome''. 2023 Apr 27; '''11''' (1):91
Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean. Description: Gilbert, Naomi E, et al. Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean. ''mSystems''. 2023 Apr 27; '''8''' (2):e0126022
Interaction between Microbes and Host in Sow Vaginas in Early Pregnancy. Description: Zang, Xupeng, et al. Interaction between Microbes and Host in Sow Vaginas in Early Pregnancy. ''mSystems''. 2023 Apr 27; '''8''' (2):e0119222
Metagenomic Discovery of "Candidatus Parvarchaeales"-Related Lineages Sheds Light on Adaptation and Diversification from Neutral-Thermal to Acidic-Mesothermal Environments. Description: Rao, Yang-Zhi, et al. Metagenomic Discovery of "Candidatus Parvarchaeales"-Related Lineages Sheds Light on Adaptation and Diversification from Neutral-Thermal to Acidic-Mesothermal Environments. ''mSystems''. 2023 Apr 27; '''8''' (2):e0125222
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems. Description: Zimmerman, Samuel, et al. Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems. ''mSystems''. 2023 Apr 27; '''8''' (2):e0011823
Spatiotemporal Dynamics of Coastal Viral Community Structure and Potential Biogeochemical Roles Affected by an Ulva prolifera Green Tide. Description: Han, Meiaoxue, et al. Spatiotemporal Dynamics of Coastal Viral Community Structure and Potential Biogeochemical Roles Affected by an Ulva prolifera Green Tide. ''mSystems''. 2023 Apr 27; '''8''' (2):e0121122
A Recombinant Chimeric Cedar Virus-Based Surrogate Neutralization Assay Platform for Pathogenic Henipaviruses. Description: Amaya, Moushimi, et al. A Recombinant Chimeric Cedar Virus-Based Surrogate Neutralization Assay Platform for Pathogenic Henipaviruses. ''Viruses''. 2023 Apr 28; '''15''' (5):
Changes of gut microbiota reflect the severity of major depressive disorder: a cross sectional study. Description: Hu, Xi, et al. Changes of gut microbiota reflect the severity of major depressive disorder: a cross sectional study. ''Transl Psychiatry''. 2023 Apr 28; '''13''' (1):137
Gut microbiome and serum metabolome analyses identify biomarkers associated with sexual maturity in quails. Description: Xiong, Xinwei, et al. Gut microbiome and serum metabolome analyses identify biomarkers associated with sexual maturity in quails. ''Poult Sci''. 2023 Apr 28; '''102''' (7):102762
Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of small mammals, pangolins and zoo animals. Description: Cui, Xinyuan, et al. Virus diversity, wildlife-domestic animal circulation and potential zoonotic viruses of small mammals, pangolins and zoo animals. ''Nat Commun''. 2023 Apr 29; '''14''' (1):2488
Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. Description: Huang, Yue, et al. Polycyclic aromatic hydrocarbon (PAH) biodegradation capacity revealed by a genome-function relationship approach. ''Environ Microbiome''. 2023 Apr 30; '''18''' (1):39
Glycine protects against doxorubicin-induced heart toxicity in mice. Description: Shosha, Mayada I, et al. Glycine protects against doxorubicin-induced heart toxicity in mice. ''Amino Acids''. 2023 May; '''55''' (5):679-693
Gut Microbiota is Associated with Aging-Related Processes of a Small Mammal Species under High-Density Crowding Stress. Description: Xu, Xiaoming, et al. Gut Microbiota is Associated with Aging-Related Processes of a Small Mammal Species under High-Density Crowding Stress. ''Adv Sci (Weinh)''. 2023 May; '''10''' (14):e2205346
Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria. Description: Riccardi, Christopher, et al. Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria. ''Microb Genom''. 2023 May; '''9''' (5):
Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression. Description: De Meyer, Sam, et al. Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression. ''PLoS Comput Biol''. 2023 May; '''19''' (5):e1011161
Profiling the human intestinal environment under physiological conditions. Description: Shalon, Dari, et al. Profiling the human intestinal environment under physiological conditions. ''Nature''. 2023 May; '''617''' (7961):581-591
The fine-scale recombination rate variation and associations with genomic features in a butterfly. Description: Palahi I Torres, Aleix, et al. The fine-scale recombination rate variation and associations with genomic features in a butterfly. ''Genome Res''. 2023 May; '''33''' (5):810-823
Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats. Description: Hwang, Yunha, et al. Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats. ''Nat Microbiol''. 2023 May; '''8''' (5):946-957
An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. Description: Velt, Amandine, et al. An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype. ''G3 (Bethesda)''. 2023 May 2; '''13''' (5):
The transcriptome of Icerya aegyptiaca (Hemiptera: Monophlebidae) and comparison with neococcoids reveal genetic clues of evolution in the scale insects. Description: Tang, Xue-Fei, et al. The transcriptome of Icerya aegyptiaca (Hemiptera: Monophlebidae) and comparison with neococcoids reveal genetic clues of evolution in the scale insects. ''BMC Genomics''. 2023 May 3; '''24''' (1):231
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. Description: Ji, Yongxin, et al. HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. ''Bioinformatics''. 2023 May 4; '''39''' (5):
First Whole Genome Sequence and Flow Cytometry Genome Size Data for the Lichen-Forming Fungus Ramalina farinacea (Ascomycota). Description: Llewellyn, Theo, et al. First Whole Genome Sequence and Flow Cytometry Genome Size Data for the Lichen-Forming Fungus Ramalina farinacea (Ascomycota). ''Genome Biol Evol''. 2023 May 7; '''15''' (5):
Gut microbiota-derived 3-phenylpropionic acid promotes intestinal epithelial barrier function via AhR signaling. Description: Hu, Jun, et al. Gut microbiota-derived 3-phenylpropionic acid promotes intestinal epithelial barrier function via AhR signaling. ''Microbiome''. 2023 May 8; '''11''' (1):102
Anastomosis Groups and Mycovirome of Rhizoctonia Isolates Causing Sugar Beet Root and Crown Rot and Their Sensitivity to Flutolanil, Thifluzamide, and Pencycuron. Description: Zhao, Can, et al. Anastomosis Groups and Mycovirome of Rhizoctonia Isolates Causing Sugar Beet Root and Crown Rot and Their Sensitivity to Flutolanil, Thifluzamide, and Pencycuron. ''J Fungi (Basel)''. 2023 May 9; '''9''' (5):
Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. Description: Ahmad, Nadim, et al. Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. ''J Fungi (Basel)''. 2023 May 9; '''9''' (5):
Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub. Description: Zhao, Shi-Wei, et al. Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub. ''Sci Data''. 2023 May 9; '''10''' (1):259
Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution. Description: Du, Shicong, et al. Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution. ''Nat Commun''. 2023 May 9; '''14''' (1):2676
Isolation and Genome-Based Characterization of Biocontrol Potential of Bacillus siamensis YB-1631 against Wheat Crown Rot Caused by Fusarium pseudograminearum. Description: Dong, Qianqian, et al. Isolation and Genome-Based Characterization of Biocontrol Potential of Bacillus siamensis YB-1631 against Wheat Crown Rot Caused by Fusarium pseudograminearum. ''J Fungi (Basel)''. 2023 May 9; '''9''' (5):
Multi-omics reveals that the host-microbiome metabolism crosstalk of differential rumen bacterial enterotypes can regulate the milk protein synthesis of dairy cows. Description: Zhang, Chenguang, et al. Multi-omics reveals that the host-microbiome metabolism crosstalk of differential rumen bacterial enterotypes can regulate the milk protein synthesis of dairy cows. ''J Anim Sci Biotechnol''. 2023 May 9; '''14''' (1):63
Detection and Phylogenetic Characterization of a Novel Adenovirus Found in Lesser Mouse-Eared Bat (Myotis blythii) in South Kazakhstan. Description: Karamendin, Kobey, et al. Detection and Phylogenetic Characterization of a Novel Adenovirus Found in Lesser Mouse-Eared Bat (Myotis blythii) in South Kazakhstan. ''Viruses''. 2023 May 10; '''15''' (5):
Identification of Trichomonas vaginalis 5-Nitroimidazole Resistance Targets. Description: Graves, Keonte J, et al. Identification of Trichomonas vaginalis 5-Nitroimidazole Resistance Targets. ''Pathogens''. 2023 May 10; '''12''' (5):
Novel Rodent Arterivirus Detected in the Brazilian Amazon. Description: da Paz, Thito Y Bezerra, et al. Novel Rodent Arterivirus Detected in the Brazilian Amazon. ''Viruses''. 2023 May 11; '''15''' (5):
A Chromosome-level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae). Description: Zhao, Kaixuan, et al. A Chromosome-level Genome Assembly and Evolution Analysis of Andrena camellia (Hymenoptera: Andrenidae). ''Genome Biol Evol''. 2023 May 12; '''15''' (5):
Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii. Description: Huang, Tianyu, et al. Chromosome-level genome assembly of the spotted alfalfa aphid Therioaphis trifolii. ''Sci Data''. 2023 May 12; '''10''' (1):274
Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study. Description: Trinh, Pauline, et al. Differences in gut metagenomes between dairy workers and community controls: a cross-sectional study. ''bioRxiv''. 2023 May 12;
Identification, Culture Characteristics and Whole-Genome Analysis of Pestalotiopsis neglecta Causing Black Spot Blight of Pinus sylvestris var. mongolica. Description: Yang, Jing, et al. Identification, Culture Characteristics and Whole-Genome Analysis of Pestalotiopsis neglecta Causing Black Spot Blight of Pinus sylvestris var. mongolica. ''J Fungi (Basel)''. 2023 May 12; '''9''' (5):
Generation of zero-valent sulfur from dissimilatory sulfate reduction in sulfate-reducing microorganisms. Description: Wang, Shanquan, et al. Generation of zero-valent sulfur from dissimilatory sulfate reduction in sulfate-reducing microorganisms. ''Proc Natl Acad Sci U S A''. 2023 May 16; '''120''' (20):e2220725120
Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture. Description: Kinsella, Cormac M, et al. Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture. ''Proc Natl Acad Sci U S A''. 2023 May 16; '''120''' (20):e2303844120
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms. Description: Moggioli, Giacomo, et al. Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms. ''Nat Commun''. 2023 May 17; '''14''' (1):2814
Metagenomic analysis reveals specific BTEX degrading microorganisms of a bacterial consortium. Description: Wu, Hui-Jun, et al. Metagenomic analysis reveals specific BTEX degrading microorganisms of a bacterial consortium. ''AMB Express''. 2023 May 17; '''13''' (1):48
ODNA: Identification of Organellar DNA by Machine Learning. Description: Martin, Roman, et al. ODNA: Identification of Organellar DNA by Machine Learning. ''Bioinformatics''. 2023 May 17; '''39''' (5):
Sulfur metabolism in subtropical marine mangrove sediments fundamentally differs from other habitats as revealed by SMDB. Description: Mo, Shuming, et al. Sulfur metabolism in subtropical marine mangrove sediments fundamentally differs from other habitats as revealed by SMDB. ''Sci Rep''. 2023 May 19; '''13''' (1):8126
Virulent Phage vB_EfaS_WH1 Removes Enterococcus faecalis Biofilm and Inhibits Its Growth on the Surface of Chicken Meat. Description: Jin, Xinxin, et al. Virulent Phage vB_EfaS_WH1 Removes Enterococcus faecalis Biofilm and Inhibits Its Growth on the Surface of Chicken Meat. ''Viruses''. 2023 May 20; '''15''' (5):
Cross-Protection Induced by Highly Conserved Human B, CD4 (+,) and CD8 (+) T Cell Epitopes-Based Coronavirus Vaccine Against Severe Infection, Disease, and Death Caused by Multiple SARS-CoV-2 Variants of Concern. Description: Prakash, Swayam, et al. Cross-Protection Induced by Highly Conserved Human B, CD4 (+,) and CD8 (+) T Cell Epitopes-Based Coronavirus Vaccine Against Severe Infection, Disease, and Death Caused by Multiple SARS-CoV-2 Variants of Concern. ''bioRxiv''. 2023 May 24;
Microbes with higher metabolic independence are enriched in human gut microbiomes under stress. Description: Veseli, Iva, et al. Microbes with higher metabolic independence are enriched in human gut microbiomes under stress. ''bioRxiv''. 2023 May 26;
De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage. Description: Libro, Pietro, et al. De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage. ''Sci Data''. 2023 May 27; '''10''' (1):330
Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. Description: Coutinho, Felipe H, et al. Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities. ''Microbiome''. 2023 May 27; '''11''' (1):118
Characteristics of methane emissions from alpine thermokarst lakes on the Tibetan Plateau. Description: Yang, Guibiao, et al. Characteristics of methane emissions from alpine thermokarst lakes on the Tibetan Plateau. ''Nat Commun''. 2023 May 30; '''14''' (1):3121
The gut microbiome modifies the associations of short- and long-term physical activity with body weight changes. Description: Wang, Kai, et al. The gut microbiome modifies the associations of short- and long-term physical activity with body weight changes. ''Microbiome''. 2023 May 30; '''11''' (1):121
Gut microbiome determines therapeutic effects of OCA on NAFLD by modulating bile acid metabolism. Description: Liu, Jianjun, et al. Gut microbiome determines therapeutic effects of OCA on NAFLD by modulating bile acid metabolism. ''NPJ Biofilms Microbiomes''. 2023 May 31; '''9''' (1):29
Accumulation of alpha-synuclein mediates podocyte injury in Fabry nephropathy. Description: Braun, Fabian, et al. Accumulation of alpha-synuclein mediates podocyte injury in Fabry nephropathy. ''J Clin Invest''. 2023 Jun 1; '''133''' (11):
A happy accident: a novel turfgrass reference genome. Description: Phillips, Alyssa R, et al. A happy accident: a novel turfgrass reference genome. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis. Description: Manley, Bethan F, et al. A highly contiguous genome assembly reveals sources of genomic novelty in the symbiotic fungus Rhizophagus irregularis. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes. Description: Godfrey, R Keating, et al. A high-quality, long-read genome assembly of the whitelined sphinx moth (Lepidoptera: Sphingidae: Hyles lineata) shows highly conserved melanin synthesis pathway genes. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
Ancient gene linkages support ctenophores as sister to other animals. Description: Schultz, Darrin T, et al. Ancient gene linkages support ctenophores as sister to other animals. ''Nature''. 2023 Jun; '''618''' (7963):110-117
A panoramic view of the genomic landscape of the genus Streptomyces. Description: Nikolaidis, Marios, et al. A panoramic view of the genomic landscape of the genus Streptomyces. ''Microb Genom''. 2023 Jun; '''9''' (6):
Chromosome-level genome assembly of Lilford's wall lizard, Podarcis lilfordi (Gunther, 1874) from the Balearic Islands (Spain). Description: Gomez-Garrido, Jessica, et al. Chromosome-level genome assembly of Lilford's wall lizard, Podarcis lilfordi (Gunther, 1874) from the Balearic Islands (Spain). ''DNA Res''. 2023 Jun 1; '''30''' (3):
Complete Genome Analysis of Subtercola sp. PAMC28395: Genomic Insights into Its Potential Role for Cold Adaptation and Biotechnological Applications. Description: Yamada, Ryoichi, et al. Complete Genome Analysis of Subtercola sp. PAMC28395: Genomic Insights into Its Potential Role for Cold Adaptation and Biotechnological Applications. ''Microorganisms''. 2023 Jun 1; '''11''' (6):
Current trends in RNA virus detection through metatranscriptome sequencing data. Description: Nakagawa, So, et al. Current trends in RNA virus detection through metatranscriptome sequencing data. ''FEBS Open Bio''. 2023 Jun; '''13''' (6):992-1000
Divergent RNA viruses infecting sea lice, major ectoparasites of fish. Description: Chang, Tianyi, et al. Divergent RNA viruses infecting sea lice, major ectoparasites of fish. ''PLoS Pathog''. 2023 Jun; '''19''' (6):e1011386
Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes. Description: Veglia, Alex J, et al. Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes. ''Commun Biol''. 2023 Jun 1; '''6''' (1):566
Epiphytic common core bacteria in the microbiomes of co-located green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) macroalgae. Description: Lu, De-Chen, et al. Epiphytic common core bacteria in the microbiomes of co-located green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) macroalgae. ''Microbiome''. 2023 Jun 1; '''11''' (1):126
Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock. Description: Brisevac, Dusica, et al. Genetic analysis of a phenotypic loss in the mechanosensory entrainment of a circalunar clock. ''PLoS Genet''. 2023 Jun; '''19''' (6):e1010763
Genomic insights into the coupling of a Chlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno. Description: Saini, Jaspreet S, et al. Genomic insights into the coupling of a Chlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno. ''ISME J''. 2023 Jun; '''17''' (6):903-915
Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting. Description: Liao, Hanpeng, et al. Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting. ''ISME J''. 2023 Jun; '''17''' (6):916-930
Metagenome Investigation of Ocular Microbiota of Cataract Patients With and Without Type 2 Diabetes. Description: Shao, Zheng, et al. Metagenome Investigation of Ocular Microbiota of Cataract Patients With and Without Type 2 Diabetes. ''Transl Vis Sci Technol''. 2023 Jun 1; '''12''' (6):1
Metagenomics-metabolomics analysis of microbial function and metabolism in petroleum-contaminated soil. Description: Li, Yong-Quan, et al. Metagenomics-metabolomics analysis of microbial function and metabolism in petroleum-contaminated soil. ''Braz J Microbiol''. 2023 Jun; '''54''' (2):935-947
Novel and Engineered Type II CRISPR Systems from Uncultivated Microbes with Broad Genome Editing Capability. Description: Alexander, Lisa M, et al. Novel and Engineered Type II CRISPR Systems from Uncultivated Microbes with Broad Genome Editing Capability. ''CRISPR J''. 2023 Jun; '''6''' (3):261-277
Optimization and evaluation of viral metagenomic amplification and sequencing procedures toward a genome-level resolution of the human fecal DNA virome. Description: Wang, Guangyang, et al. Optimization and evaluation of viral metagenomic amplification and sequencing procedures toward a genome-level resolution of the human fecal DNA virome. ''J Adv Res''. 2023 Jun; '''48''': 75-86
PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793. Description: Gomes-Dos-Santos, Andre, et al. PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793. ''Sci Data''. 2023 Jun 1; '''10''' (1):340
Pervasive tandem duplications and convergent evolution shape coral genomes. Description: Noel, Benjamin, et al. Pervasive tandem duplications and convergent evolution shape coral genomes. ''Genome Biol''. 2023 Jun 1; '''24''' (1):123
Radial spoke protein 9 is necessary for axoneme assembly in Plasmodium but not in trypanosomatid parasites. Description: Ramakrishnan, Chandra, et al. Radial spoke protein 9 is necessary for axoneme assembly in Plasmodium but not in trypanosomatid parasites. ''J Cell Sci''. 2023 Jun 1; '''136''' (11):
Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota. Description: D'Angelo, Timothy, et al. Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota. ''ISME J''. 2023 Jun; '''17''' (6):891-902
Whole genome assemblies of Zophobas morio and Tenebrio molitor. Description: Kaur, Sabhjeet, et al. Whole genome assemblies of Zophobas morio and Tenebrio molitor. ''G3 (Bethesda)''. 2023 Jun 1; '''13''' (6):
Dissecting the impact of dietary fiber type on atherosclerosis in mice colonized with different gut microbial communities. Description: Hutchison, Evan R, et al. Dissecting the impact of dietary fiber type on atherosclerosis in mice colonized with different gut microbial communities. ''NPJ Biofilms Microbiomes''. 2023 Jun 3; '''9''' (1):31
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses. Description: Tran, Tommy H, et al. Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses. ''bioRxiv''. 2023 Jun 5;
Divergent functions of two clades of flavodoxin in diatoms mitigate oxidative stress and iron limitation. Description: Graff van Creveld, Shiri, et al. Divergent functions of two clades of flavodoxin in diatoms mitigate oxidative stress and iron limitation. ''Elife''. 2023 Jun 6; '''12''':
Defining Microbial Community Functions in Chronic Human Infection with Metatranscriptomics. Description: Adekoya, Aanuoluwa E, et al. Defining Microbial Community Functions in Chronic Human Infection with Metatranscriptomics. ''bioRxiv''. 2023 Jun 7;
Multi-omics analysis reveals changes in tryptophan and cholesterol metabolism before and after sexual maturation in captive macaques. Description: Liu, Xu, et al. Multi-omics analysis reveals changes in tryptophan and cholesterol metabolism before and after sexual maturation in captive macaques. ''BMC Genomics''. 2023 Jun 7; '''24''' (1):308
Origin of minicircular mitochondrial genomes in red algae. Description: Lee, Yongsung, et al. Origin of minicircular mitochondrial genomes in red algae. ''Nat Commun''. 2023 Jun 8; '''14''' (1):3363
Grapevine Endophyte Endornavirus and Two New Endornaviruses Found Associated with Grapevines (Vitis vinifera L.) in Idaho, USA. Description: Dahan, Jennifer, et al. Grapevine Endophyte Endornavirus and Two New Endornaviruses Found Associated with Grapevines (Vitis vinifera L.) in Idaho, USA. ''Viruses''. 2023 Jun 10; '''15''' (6):
Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics. Description: Li, Leyuan, et al. Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics. ''Nat Commun''. 2023 Jun 10; '''14''' (1):3428
SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. Description: Bustion, Annamarie E, et al. SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations. ''Elife''. 2023 Jun 12; '''12''':
A draft genome assembly of reef-building octocoral Heliopora coerulea. Description: Ip, Jack Chi-Ho, et al. A draft genome assembly of reef-building octocoral Heliopora coerulea. ''Sci Data''. 2023 Jun 14; '''10''' (1):381
Future ocean conditions induce necrosis, microbial dysbiosis and nutrient cycling imbalance in the reef sponge Stylissa flabelliformis. Description: Botte, Emmanuelle S, et al. Future ocean conditions induce necrosis, microbial dysbiosis and nutrient cycling imbalance in the reef sponge Stylissa flabelliformis. ''ISME Commun''. 2023 Jun 14; '''3''' (1):53
Mn(2+) Luminescence in Ca(9)Zn(1-x)Mn(x)Na(PO(4))(7) Solid Solution, 0 Description: Gallyamov, Eldar M, et al. Mn(2+) Luminescence in Ca(9)Zn(1-x)Mn(x)Na(PO(4))(7) Solid Solution, 0
A Diverse Virome Is Identified in Parasitic Flatworms of Domestic Animals in Xinjiang, China. Description: Zhang, Peng, et al. A Diverse Virome Is Identified in Parasitic Flatworms of Domestic Animals in Xinjiang, China. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0070223
Bacterioplankton Communities in Dissolved Organic Carbon-Rich Amazonian Black Water. Description: Sylvain, Francois-Etienne, et al. Bacterioplankton Communities in Dissolved Organic Carbon-Rich Amazonian Black Water. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0479322
Comparative Functional Genome Analysis Reveals the Habitat Adaptation and Biocontrol Characteristics of Plant Growth-Promoting Bacteria in NCBI Databases. Description: Wang, Zhen, et al. Comparative Functional Genome Analysis Reveals the Habitat Adaptation and Biocontrol Characteristics of Plant Growth-Promoting Bacteria in NCBI Databases. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0500722
Comparative Genomics and Physiological Investigations Supported Multifaceted Plant Growth-Promoting Activities in Two Hypericum perforatum L.-Associated Plant Growth-Promoting Rhizobacteria for Microbe-Assisted Cultivation. Description: Raj, Yog, et al. Comparative Genomics and Physiological Investigations Supported Multifaceted Plant Growth-Promoting Activities in Two Hypericum perforatum L.-Associated Plant Growth-Promoting Rhizobacteria for Microbe-Assisted Cultivation. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0060723
Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory. Description: Obiol, Aleix, et al. Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory. ''Microbiome''. 2023 Jun 15; '''11''' (1):134
Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features. Description: Zhu, Qianhui, et al. Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0464522
Prevalence of Reversed Genome Organizations for Viruses in the Family Iflaviridae, Order Picornavirales. Description: Zhang, Yan, et al. Prevalence of Reversed Genome Organizations for Viruses in the Family Iflaviridae, Order Picornavirales. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0473822
Viromics Reveals the High Diversity of Viruses from Fishes of the Tibet Highland. Description: Xi, Yuan, et al. Viromics Reveals the High Diversity of Viruses from Fishes of the Tibet Highland. ''Microbiol Spectr''. 2023 Jun 15; '''11''' (3):e0094623
Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes. Description: Sannino, Ciro, et al. Distinct taxonomic and functional profiles of high Arctic and alpine permafrost-affected soil microbiomes. ''Environ Microbiome''. 2023 Jun 16; '''18''' (1):54
A chromosome-level genome assembly of tomato pinworm, Tuta absoluta. Description: Liu, Ying, et al. A chromosome-level genome assembly of tomato pinworm, Tuta absoluta. ''Sci Data''. 2023 Jun 17; '''10''' (1):390
CRISPR arrays as high-resolution markers to track microbial transmission during influenza infection. Description: Zhang, Lingdi, et al. CRISPR arrays as high-resolution markers to track microbial transmission during influenza infection. ''Microbiome''. 2023 Jun 17; '''11''' (1):136
Metagenomic Sequencing to Analyze Composition and Function of Top-Gray Chalky Grain Microorganisms from Hybrid Rice Seeds. Description: Liu, You, et al. Metagenomic Sequencing to Analyze Composition and Function of Top-Gray Chalky Grain Microorganisms from Hybrid Rice Seeds. ''Plants (Basel)''. 2023 Jun 18; '''12''' (12):
Riluzole, a Derivative of Benzothiazole as a Potential Anti-Amoebic Agent against Entamoeba histolytica. Description: Velasquez-Torres, Maritza, et al. Riluzole, a Derivative of Benzothiazole as a Potential Anti-Amoebic Agent against Entamoeba histolytica. ''Pharmaceuticals (Basel)''. 2023 Jun 19; '''16''' (6):
The chromosome-scale genome assembly of cluster bean provides molecular insight into edible gum (galactomannan) biosynthesis family genes. Description: Gaikwad, Kishor, et al. The chromosome-scale genome assembly of cluster bean provides molecular insight into edible gum (galactomannan) biosynthesis family genes. ''Sci Rep''. 2023 Jun 19; '''13''' (1):9941
The Importance of Entomo-Virological Investigation of Yellow Fever Virus to Strengthen Surveillance in Brazil. Description: Cruz, Ana Cecilia Ribeiro, et al. The Importance of Entomo-Virological Investigation of Yellow Fever Virus to Strengthen Surveillance in Brazil. ''Trop Med Infect Dis''. 2023 Jun 20; '''8''' (6):
Characterization of the Human Blood Virome in Iranian Multiple Transfused Patients. Description: Thijssen, Marijn, et al. Characterization of the Human Blood Virome in Iranian Multiple Transfused Patients. ''Viruses''. 2023 Jun 23; '''15''' (7):
Integrated genomic and functional analyses of human skin-associated Staphylococcus reveals extensive inter- and intra-species diversity. Description: Joglekar, Payal, et al. Integrated genomic and functional analyses of human skin-associated Staphylococcus reveals extensive inter- and intra-species diversity. ''bioRxiv''. 2023 Jun 23;
Chromosome-level assemblies of cultivated water chestnut Trapa bicornis and its wild relative Trapa incisa. Description: Qu, Minghao, et al. Chromosome-level assemblies of cultivated water chestnut Trapa bicornis and its wild relative Trapa incisa. ''Sci Data''. 2023 Jun 24; '''10''' (1):407
Expansion of Armatimonadota through marine sediment sequencing describes two classes with unique ecological roles. Description: Carlton, John D, et al. Expansion of Armatimonadota through marine sediment sequencing describes two classes with unique ecological roles. ''ISME Commun''. 2023 Jun 24; '''3''' (1):64
The facilitating role of phycospheric heterotrophic bacteria in cyanobacterial phosphonate availability and Microcystis bloom maintenance. Description: Zhao, Liang, et al. The facilitating role of phycospheric heterotrophic bacteria in cyanobacterial phosphonate availability and Microcystis bloom maintenance. ''Microbiome''. 2023 Jun 26; '''11''' (1):142
Metagenomic Analyses Reveal the Influence of Depth Layers on Marine Biodiversity on Tropical and Subtropical Regions. Description: Santiago, Bianca C F, et al. Metagenomic Analyses Reveal the Influence of Depth Layers on Marine Biodiversity on Tropical and Subtropical Regions. ''Microorganisms''. 2023 Jun 27; '''11''' (7):
Age-related alterations in metabolome and microbiome provide insights in dietary transition in giant pandas. Description: Liu, Fangyuan, et al. Age-related alterations in metabolome and microbiome provide insights in dietary transition in giant pandas. ''mSystems''. 2023 Jun 29; '''8''' (3):e0025223
An insight into the functional genomics and species classification of Eudiplozoon nipponicum (Monogenea, Diplozoidae), a haematophagous parasite of the common carp Cyprinus carpio. Description: Vorel, Jiri, et al. An insight into the functional genomics and species classification of Eudiplozoon nipponicum (Monogenea, Diplozoidae), a haematophagous parasite of the common carp Cyprinus carpio. ''BMC Genomics''. 2023 Jun 29; '''24''' (1):363
Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes. Description: Haro-Moreno, Jose M, et al. Flotillin-associated rhodopsin (FArhodopsin), a widespread paralog of proteorhodopsin in aquatic bacteria with streamlined genomes. ''mSystems''. 2023 Jun 29; '''8''' (3):e0000823
Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities. Description: Miller, Samuel E, et al. Metaproteomics reveals functional partitioning and vegetational variation among permafrost-affected Arctic soil bacterial communities. ''mSystems''. 2023 Jun 29; '''8''' (3):e0123822
Metatranscriptomic analysis uncovers prevalent viral ORFs compatible with mitochondrial translation. Description: Begeman, Adam, et al. Metatranscriptomic analysis uncovers prevalent viral ORFs compatible with mitochondrial translation. ''mSystems''. 2023 Jun 29; '''8''' (3):e0100222
Parallel and convergent genomic changes underlie independent subterranean colonization across beetles. Description: Balart-Garcia, Pau, et al. Parallel and convergent genomic changes underlie independent subterranean colonization across beetles. ''Nat Commun''. 2023 Jun 29; '''14''' (1):3842
The evolutionary history of hepaciviruses. Description: Li, Y Q, et al. The evolutionary history of hepaciviruses. ''bioRxiv''. 2023 Jun 30;
Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. Description: Lopez-Sanchez, Rafael, et al. Analysing the dynamics of the bacterial community in pozol, a Mexican fermented corn dough. ''Microbiology (Reading)''. 2023 Jul; '''169''' (7):
Benzo[a]pyrene stress impacts adaptive strategies and ecological functions of earthworm intestinal viromes. Description: Xia, Rong, et al. Benzo[a]pyrene stress impacts adaptive strategies and ecological functions of earthworm intestinal viromes. ''ISME J''. 2023 Jul; '''17''' (7):1004-1014
Disease-associated gut microbiome and critical metabolomic alterations in patients with colorectal cancer. Description: Zhang, Hongze, et al. Disease-associated gut microbiome and critical metabolomic alterations in patients with colorectal cancer. ''Cancer Med''. 2023 Jul; '''12''' (14):15720-15735
GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data. Description: Sessa, Emily B, et al. GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data. ''Appl Plant Sci''. 2023 Jul-Aug; '''11''' (4):e11536
Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira. Description: Zhang, Yan, et al. Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira. ''ISME J''. 2023 Jul; '''17''' (7):993-1003
Marine phytoplankton downregulate core photosynthesis and carbon storage genes upon rapid mixed layer shallowing. Description: Diaz, Ben P, et al. Marine phytoplankton downregulate core photosynthesis and carbon storage genes upon rapid mixed layer shallowing. ''ISME J''. 2023 Jul; '''17''' (7):1074-1088
Metabolic influence of core ciliates within the rumen microbiome. Description: Andersen, Thea O, et al. Metabolic influence of core ciliates within the rumen microbiome. ''ISME J''. 2023 Jul; '''17''' (7):1128-1140
The gut microbiome and resistome of conventionally vs. pasture-raised pigs. Description: Holman, Devin B, et al. The gut microbiome and resistome of conventionally vs. pasture-raised pigs. ''Microb Genom''. 2023 Jul; '''9''' (7):
A PacBio Hi-Fi Genome Assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758). Description: Gomes-Dos-Santos, Andre, et al. A PacBio Hi-Fi Genome Assembly of the Painter's Mussel Unio pictorum (Linnaeus, 1758). ''Genome Biol Evol''. 2023 Jul 3; '''15''' (7):
Evolutionary origin, population diversity, and diagnostics for a cryptic hybrid pathogen. Description: Steenwyk, Jacob L, et al. Evolutionary origin, population diversity, and diagnostics for a cryptic hybrid pathogen. ''bioRxiv''. 2023 Jul 3;
CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing. Description: Zhou, Fengxia, et al. CRISPRimmunity: an interactive web server for CRISPR-associated Important Molecular events and Modulators Used in geNome edIting Tool identifYing. ''Nucleic Acids Res''. 2023 Jul 5; '''51''' (W1):W93-W107
CrusTome: a transcriptome database resource for large-scale analyses across Crustacea. Description: Perez-Moreno, Jorge L, et al. CrusTome: a transcriptome database resource for large-scale analyses across Crustacea. ''G3 (Bethesda)''. 2023 Jul 5; '''13''' (7):
Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms. Description: Almeida-Silva, Fabricio, et al. Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms. ''Mol Biol Evol''. 2023 Jul 5; '''40''' (7):
BacSeq: A User-Friendly Automated Pipeline for Whole-Genome Sequence Analysis of Bacterial Genomes. Description: Chukamnerd, Arnon, et al. BacSeq: A User-Friendly Automated Pipeline for Whole-Genome Sequence Analysis of Bacterial Genomes. ''Microorganisms''. 2023 Jul 6; '''11''' (7):
TET2 and TET3 loss disrupts small intestine differentiation and homeostasis. Description: Ansari, Ihab, et al. TET2 and TET3 loss disrupts small intestine differentiation and homeostasis. ''Nat Commun''. 2023 Jul 6; '''14''' (1):4005
Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. Description: Ban, Hiroki, et al. Genome analysis of Parmales, the sister group of diatoms, reveals the evolutionary specialization of diatoms from phago-mixotrophs to photoautotrophs. ''Commun Biol''. 2023 Jul 7; '''6''' (1):697
A catalog of microbial genes and metagenome-assembled genomes from the quail gut microbiome. Description: Xiong, Xinwei, et al. A catalog of microbial genes and metagenome-assembled genomes from the quail gut microbiome. ''Poult Sci''. 2023 Jul 9; '''102''' (10):102931
Four Novel Caudoviricetes Bacteriophages Isolated from Baltic Sea Water Infect Colonizers of Aurelia aurita. Description: Stante, Melissa, et al. Four Novel Caudoviricetes Bacteriophages Isolated from Baltic Sea Water Infect Colonizers of Aurelia aurita. ''Viruses''. 2023 Jul 9; '''15''' (7):
Comparative genomics reveals the diversification of triterpenoid biosynthesis and origin of ocotillol-type triterpenes in Panax. Description: Yang, Zijiang, et al. Comparative genomics reveals the diversification of triterpenoid biosynthesis and origin of ocotillol-type triterpenes in Panax. ''Plant Commun''. 2023 Jul 10; '''4''' (4):100591
Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential. Description: Wang, Jing, et al. Individual bat virome analysis reveals co-infection and spillover among bats and virus zoonotic potential. ''Nat Commun''. 2023 Jul 10; '''14''' (1):4079
Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants. Description: Huang, Jie, et al. Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants. ''Plant Commun''. 2023 Jul 10; '''4''' (4):100595
Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group. Description: Tisza, Michael J, et al. Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group. ''Nat Commun''. 2023 Jul 10; '''14''' (1):4082
The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation. Description: Feng, Tao, et al. The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation. ''Commun Biol''. 2023 Jul 10; '''6''' (1):706
Secretome Analysis for a New Strain of the Blackleg Fungus Plenodomus lingam Reveals Candidate Proteins for Effectors and Virulence Factors. Description: Bouqellah, Nahla A, et al. Secretome Analysis for a New Strain of the Blackleg Fungus Plenodomus lingam Reveals Candidate Proteins for Effectors and Virulence Factors. ''J Fungi (Basel)''. 2023 Jul 11; '''9''' (7):
Midgut transcriptomic responses to dengue and chikungunya viruses in the vectors Aedes albopictus and Aedes malayensis. Description: Modahl, Cassandra M, et al. Midgut transcriptomic responses to dengue and chikungunya viruses in the vectors Aedes albopictus and Aedes malayensis. ''Sci Rep''. 2023 Jul 12; '''13''' (1):11271
Crosstalk between Breast Milk N-Acetylneuraminic Acid and Infant Growth in a Gut Microbiota-Dependent Manner. Description: Ouyang, Runze, et al. Crosstalk between Breast Milk N-Acetylneuraminic Acid and Infant Growth in a Gut Microbiota-Dependent Manner. ''Metabolites''. 2023 Jul 13; '''13''' (7):
Hybridisation has shaped a recent radiation of grass-feeding aphids. Description: Mathers, Thomas C, et al. Hybridisation has shaped a recent radiation of grass-feeding aphids. ''BMC Biol''. 2023 Jul 13; '''21''' (1):157
Multivalent interactions of the disordered regions of XLF and XRCC4 foster robust cellular NHEJ and drive the formation of ligation-boosting condensates in vitro. Description: Vu, Duc-Duy, et al. Multivalent interactions of the disordered regions of XLF and XRCC4 foster robust cellular NHEJ and drive the formation of ligation-boosting condensates in vitro. ''bioRxiv''. 2023 Jul 13;
Distribution and Activity of Sulfur-Metabolizing Bacteria along the Temperature Gradient in Phototrophic Mats of the Chilean Hot Spring Porcelana. Description: Konrad, Ricardo, et al. Distribution and Activity of Sulfur-Metabolizing Bacteria along the Temperature Gradient in Phototrophic Mats of the Chilean Hot Spring Porcelana. ''Microorganisms''. 2023 Jul 14; '''11''' (7):
Gold-Based Coronands as Hosts for M(3+) Metal Ions: Ring Size Matters. Description: Sucena, Suelen Ferreira, et al. Gold-Based Coronands as Hosts for M(3+) Metal Ions: Ring Size Matters. ''Molecules''. 2023 Jul 14; '''28''' (14):
Ablation of the gut microbiota alleviates high-methionine diet-induced hyperhomocysteinemia and glucose intolerance in mice. Description: Li, Wenqiang, et al. Ablation of the gut microbiota alleviates high-methionine diet-induced hyperhomocysteinemia and glucose intolerance in mice. ''NPJ Sci Food''. 2023 Jul 17; '''7''' (1):36
Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position. Description: Fan, Zheng, et al. Lampshade web spider Ectatosticta davidi chromosome-level genome assembly provides evidence for its phylogenetic position. ''Commun Biol''. 2023 Jul 18; '''6''' (1):748
Novel Synergies and Isolate Specificities in the Drug Interaction Landscape of Mycobacterium abscessus. Description: Van, Nhi, et al. Novel Synergies and Isolate Specificities in the Drug Interaction Landscape of Mycobacterium abscessus. ''Antimicrob Agents Chemother''. 2023 Jul 18; '''67''' (7):e0009023
Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature. Description: Lihavainen, Jenna, et al. Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature. ''Nat Commun''. 2023 Jul 18; '''14''' (1):4288
The first cavefish in the Dinaric Karst? Cave colonization made possible by phenotypic plasticity in Telestes karsticus. Description: Cupic, Mateo, et al. The first cavefish in the Dinaric Karst? Cave colonization made possible by phenotypic plasticity in Telestes karsticus. ''Zool Res''. 2023 Jul 18; '''44''' (4):821-833
Improved Gas Sensing Capabilities of MoS(2)/Diamond Heterostructures at Room Temperature. Description: Koci, Michal, et al. Improved Gas Sensing Capabilities of MoS(2)/Diamond Heterostructures at Room Temperature. ''ACS Appl Mater Interfaces''. 2023 Jul 19; '''15''' (28):34206-34214
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe. Description: Belcour, Arnaud, et al. Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe. ''Genome Res''. 2023 Jul 19; '''33''' (6):972-87
Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont. Description: Pan, Qi, et al. Effects of Candidatus Liberibacter asiaticus infection on metagenome of Diaphorina citri gut endosymbiont. ''Sci Data''. 2023 Jul 21; '''10''' (1):478
A Symbiotic Fungus Sistotrema Benefits Blueberry Rejuvenation and Abiotic Stress Tolerance. Description: Ye, Yu, et al. A Symbiotic Fungus Sistotrema Benefits Blueberry Rejuvenation and Abiotic Stress Tolerance. ''J Fungi (Basel)''. 2023 Jul 24; '''9''' (7):
Microbial Communities in Ferromanganese Sediments from the Northern Basin of Lake Baikal (Russia). Description: Lomakina, Anna, et al. Microbial Communities in Ferromanganese Sediments from the Northern Basin of Lake Baikal (Russia). ''Microorganisms''. 2023 Jul 24; '''11''' (7):
Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. Description: Wen, Tao, et al. Tapping the rhizosphere metabolites for the prebiotic control of soil-borne bacterial wilt disease. ''Nat Commun''. 2023 Jul 26; '''14''' (1):4497
Comparative Genomic Analysis and BTEX Degradation Pathways of a Thermotolerant Cupriavidus cauae PHS1. Description: Sathesh-Prabu, Chandran, et al. Comparative Genomic Analysis and BTEX Degradation Pathways of a Thermotolerant Cupriavidus cauae PHS1. ''J Microbiol Biotechnol''. 2023 Jul 28; '''33''' (7):875-885
The role and risks of selective adaptation in extreme coral habitats. Description: Scucchia, Federica, et al. The role and risks of selective adaptation in extreme coral habitats. ''Nat Commun''. 2023 Jul 28; '''14''' (1):4475
Bioinformatic Surveillance Leads to Discovery of Two Novel Putative Bunyaviruses Associated with Black Soldier Fly. Description: Walt, Hunter K, et al. Bioinformatic Surveillance Leads to Discovery of Two Novel Putative Bunyaviruses Associated with Black Soldier Fly. ''Viruses''. 2023 Jul 29; '''15''' (8):
Antimony efflux underpins phosphorus cycling and resistance of phosphate-solubilizing bacteria in mining soils. Description: Liu, Shengwei, et al. Antimony efflux underpins phosphorus cycling and resistance of phosphate-solubilizing bacteria in mining soils. ''ISME J''. 2023 Aug; '''17''' (8):1278-1289
Chromosome-Scale Genome Assembly of the Solitary Parasitoid Wasp Microplitis manilae Ashmead, 1904 (Braconidae: Microgastrinae). Description: Yan, Bin, et al. Chromosome-Scale Genome Assembly of the Solitary Parasitoid Wasp Microplitis manilae Ashmead, 1904 (Braconidae: Microgastrinae). ''Genome Biol Evol''. 2023 Aug 1; '''15''' (8):
Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor. Description: Garrido-Amador, Paloma, et al. Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor. ''Nat Microbiol''. 2023 Aug; '''8''' (8):1574-1586
Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study. Description: Fuhrmeister, Erica R, et al. Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study. ''Lancet Microbe''. 2023 Aug; '''4''' (8):e591-e600
Genomic Resequencing Unravels the Genetic Basis of Domestication, Expansion, and Trait Improvement in Morus Atropurpurea. Description: Dai, Fanwei, et al. Genomic Resequencing Unravels the Genetic Basis of Domestication, Expansion, and Trait Improvement in Morus Atropurpurea. ''Adv Sci (Weinh)''. 2023 Aug; '''10''' (24):e2300039
Insights into the Ecological Diversification of the Hymenochaetales based on Comparative Genomics and Phylogenomics With an Emphasis on Coltricia. Description: Zhao, Heng, et al. Insights into the Ecological Diversification of the Hymenochaetales based on Comparative Genomics and Phylogenomics With an Emphasis on Coltricia. ''Genome Biol Evol''. 2023 Aug 1; '''15''' (8):
Isolation and genome sequencing of cytomegaloviruses from Natal multimammate mice (Mastomys natalensis). Description: Hansen, Frederick, et al. Isolation and genome sequencing of cytomegaloviruses from Natal multimammate mice (Mastomys natalensis). ''J Gen Virol''. 2023 Aug; '''104''' (8):
Vibrio aestuarianus clade A and clade B isolates are associated with Pacific oyster (Magallana gigas) disease outbreaks across Ireland. Description: Coyle, Nicola M, et al. Vibrio aestuarianus clade A and clade B isolates are associated with Pacific oyster (Magallana gigas) disease outbreaks across Ireland. ''Microb Genom''. 2023 Aug; '''9''' (8):
Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. Description: Chopyk, Jessica, et al. Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. ''BMC Microbiol''. 2023 Aug 2; '''23''' (1):206
A syntelog-based pan-genome provides insights into rice domestication and de-domestication. Description: Wu, Dongya, et al. A syntelog-based pan-genome provides insights into rice domestication and de-domestication. ''Genome Biol''. 2023 Aug 3; '''24''' (1):179
DNA methylation signatures of duplicate gene evolution in angiosperms. Description: Kenchanmane Raju, Sunil K, et al. DNA methylation signatures of duplicate gene evolution in angiosperms. ''Plant Physiol''. 2023 Aug 3; '''192''' (4):2883-2901
Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. Description: Mendes, Lucas William, et al. Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome. ''Environ Microbiome''. 2023 Aug 3; '''18''' (1):68
Interpenetration Phenomena via Anion Template Effects in Fe(II) and Co(II) Coordination Networks with a Bis-(1,2,4-triazole) Ligand. Description: Jordan, Dustin N, et al. Interpenetration Phenomena via Anion Template Effects in Fe(II) and Co(II) Coordination Networks with a Bis-(1,2,4-triazole) Ligand. ''Polymers (Basel)''. 2023 Aug 3; '''15''' (15):
The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular carcinoma. Description: Koelsch, Nicholas, et al. The crosstalking immune cells network creates a collective function beyond the function of each cellular constituent during the progression of hepatocellular carcinoma. ''Sci Rep''. 2023 Aug 3; '''13''' (1):12630
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes. Description: Perez, Maeva, et al. Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes. ''Mol Biol Evol''. 2023 Aug 3; '''40''' (8):
Functional divergence of CYP76AKs shapes the chemodiversity of abietane-type diterpenoids in genus Salvia. Description: Hu, Jiadong, et al. Functional divergence of CYP76AKs shapes the chemodiversity of abietane-type diterpenoids in genus Salvia. ''Nat Commun''. 2023 Aug 4; '''14''' (1):4696
Metagenomics revealed a correlation of gut phageome with autism spectrum disorder. Description: Shahin, Khashayar, et al. Metagenomics revealed a correlation of gut phageome with autism spectrum disorder. ''Gut Pathog''. 2023 Aug 4; '''15''' (1):39
Presence and role of viruses in anaerobic digestion of food waste under environmental variability. Description: Fan, Lu, et al. Presence and role of viruses in anaerobic digestion of food waste under environmental variability. ''Microbiome''. 2023 Aug 4; '''11''' (1):170
metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering. Description: Hao, Chunlin, et al. metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering. ''Microbiome''. 2023 Aug 7; '''11''' (1):176
Rhenium(I) Tricarbonyl Complexes of 1,10-Phenanthroline Derivatives with Unexpectedly High Cytotoxicity. Description: Enslin, Lucy E, et al. Rhenium(I) Tricarbonyl Complexes of 1,10-Phenanthroline Derivatives with Unexpectedly High Cytotoxicity. ''Inorg Chem''. 2023 Aug 7; '''62''' (31):12237-12251
TRGdb: a universal resource for the exploration of taxonomically restricted genes in bacteria. Description: Zielezinski, Andrzej, et al. TRGdb: a universal resource for the exploration of taxonomically restricted genes in bacteria. ''Database (Oxford)''. 2023 Aug 8; '''2023''':
In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment. Description: Kurbessoian, Tania, et al. In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment. ''G3 (Bethesda)''. 2023 Aug 9; '''13''' (8):
Characterization of the pig lower respiratory tract antibiotic resistome. Description: Zhou, Yunyan, et al. Characterization of the pig lower respiratory tract antibiotic resistome. ''Nat Commun''. 2023 Aug 12; '''14''' (1):4868
The Microbiome and Antibiotic Resistome in Soil under Biodegradable Composite Carbon Source Amendment. Description: Yang, Zhongchen, et al. The Microbiome and Antibiotic Resistome in Soil under Biodegradable Composite Carbon Source Amendment. ''J Xenobiot''. 2023 Aug 15; '''13''' (3):424-438
The first chromosome-level genome assembly of Entomobrya proxima Folsom, 1924 (Collembola: Entomobryidae). Description: Jin, Jianfeng, et al. The first chromosome-level genome assembly of Entomobrya proxima Folsom, 1924 (Collembola: Entomobryidae). ''Sci Data''. 2023 Aug 16; '''10''' (1):541
Exploring the Core Bacteria and Functional Traits in Pecan (Carya illinoinensis) Rhizosphere. Description: Shi, Mengting, et al. Exploring the Core Bacteria and Functional Traits in Pecan (Carya illinoinensis) Rhizosphere. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0011023
Identification of Gut Microbiome and Metabolites Associated with Acute Diarrhea in Cats. Description: Bai, Huasong, et al. Identification of Gut Microbiome and Metabolites Associated with Acute Diarrhea in Cats. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0059023
Nelson Bay Reovirus Isolated from Bats and Blood-Sucking Arthropods Collected in Yunnan Province, China. Description: Kuang, Guopeng, et al. Nelson Bay Reovirus Isolated from Bats and Blood-Sucking Arthropods Collected in Yunnan Province, China. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0512222
Short-Term Dietary Intervention with Whole Oats Protects from Antibiotic-Induced Dysbiosis. Description: Costa, Stephen K, et al. Short-Term Dietary Intervention with Whole Oats Protects from Antibiotic-Induced Dysbiosis. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0237623
Terabase-Scale Coassembly of a Tropical Soil Microbiome. Description: Riley, Robert, et al. Terabase-Scale Coassembly of a Tropical Soil Microbiome. ''Microbiol Spectr''. 2023 Aug 17; '''11''' (4):e0020023
Tissue-specific transcriptomes reveal potential mechanisms of microbiome heterogeneity in an ancient fish. Description: Thorstensen, Matt J, et al. Tissue-specific transcriptomes reveal potential mechanisms of microbiome heterogeneity in an ancient fish. ''Database (Oxford)''. 2023 Aug 17; '''2023''':
CryptoCEN: A Co-Expression Network for Cryptococcus neoformans reveals novel proteins involved in DNA damage repair. Description: O'Meara, Matthew J, et al. CryptoCEN: A Co-Expression Network for Cryptococcus neoformans reveals novel proteins involved in DNA damage repair. ''bioRxiv''. 2023 Aug 18;
Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation. Description: Brink, Daniel P, et al. Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation. ''Microb Cell Fact''. 2023 Aug 19; '''22''' (1):160
Whole genome sequencing and the lignocellulose degradation potential of Bacillus subtilis RLI2019 isolated from the intestine of termites. Description: Liu, Gongwei, et al. Whole genome sequencing and the lignocellulose degradation potential of Bacillus subtilis RLI2019 isolated from the intestine of termites. ''Biotechnol Biofuels Bioprod''. 2023 Aug 19; '''16''' (1):130
Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae. Description: Albanaz, Amanda T S, et al. Shining the spotlight on the neglected: new high-quality genome assemblies as a gateway to understanding the evolution of Trypanosomatidae. ''BMC Genomics''. 2023 Aug 21; '''24''' (1):471
Dengue Fever Surveillance in Mato Grosso do Sul: Insights from Genomic Analysis and Implications for Public Health Strategies. Description: Castilho de Arruda, Larissa Domingues, et al. Dengue Fever Surveillance in Mato Grosso do Sul: Insights from Genomic Analysis and Implications for Public Health Strategies. ''Viruses''. 2023 Aug 23; '''15''' (9):
Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments. Description: Zhang, Zhi-Feng, et al. Long-read assembled metagenomic approaches improve our understanding on metabolic potentials of microbial community in mangrove sediments. ''Microbiome''. 2023 Aug 23; '''11''' (1):188
Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential. Description: Penumutchu, Swathi, et al. Fiber supplementation protects from antibiotic-induced gut microbiome dysbiosis by modulating gut redox potential. ''Nat Commun''. 2023 Aug 24; '''14''' (1):5161
Identification and characterization of a polyomavirus in the thornback skate (Raja clavata). Description: Abrantes, Joana, et al. Identification and characterization of a polyomavirus in the thornback skate (Raja clavata). ''Virol J''. 2023 Aug 24; '''20''' (1):190
Isolation and Optimization of Aflatoxin B(1) Degradation by Uniform Design and Complete Genome Sequencing of Novel Deep-Sea Kocuria rosea Strain 13. Description: Wang, Jingying, et al. Isolation and Optimization of Aflatoxin B(1) Degradation by Uniform Design and Complete Genome Sequencing of Novel Deep-Sea Kocuria rosea Strain 13. ''Toxins (Basel)''. 2023 Aug 24; '''15''' (9):
Improving diagnosis of non-malarial fevers in Senegal: Borrelia and the contribution of tick-borne bacteria. Description: Levine, Zoe C, et al. Improving diagnosis of non-malarial fevers in Senegal: Borrelia and the contribution of tick-borne bacteria. ''medRxiv''. 2023 Aug 25;
Microbial communities related to the sulfur cycle in the Sansha Yongle Blue Hole. Description: Sun, Kai, et al. Microbial communities related to the sulfur cycle in the Sansha Yongle Blue Hole. ''Microbiol Spectr''. 2023 Aug 25; '''11''' (5):e0114923
PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer. Description: Tang, Xubo, et al. PLASMe: a tool to identify PLASMid contigs from short-read assemblies using transformer. ''Nucleic Acids Res''. 2023 Aug 25; '''51''' (15):e83
Single-worm long-read sequencing reveals genome diversity in free-living nematodes. Description: Lee, Yi-Chien, et al. Single-worm long-read sequencing reveals genome diversity in free-living nematodes. ''Nucleic Acids Res''. 2023 Aug 25; '''51''' (15):8035-8047
Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments. Description: Zhou, Xiaotian, et al. Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments. ''Microbiome''. 2023 Aug 26; '''11''' (1):191
Characterization of Diverse Anelloviruses, Cressdnaviruses, and Bacteriophages in the Human Oral DNA Virome from North Carolina (USA). Description: Paietta, Elise N, et al. Characterization of Diverse Anelloviruses, Cressdnaviruses, and Bacteriophages in the Human Oral DNA Virome from North Carolina (USA). ''Viruses''. 2023 Aug 26; '''15''' (9):
Stratified microbial communities in Australia's only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling. Description: Ghaly, Timothy M, et al. Stratified microbial communities in Australia's only anchialine cave are taxonomically novel and drive chemotrophic energy production via coupled nitrogen-sulphur cycling. ''Microbiome''. 2023 Aug 26; '''11''' (1):190
Aldiminium Cations as Countercations to Discrete Main Group Fluoroanions. Description: Gruden, Evelin, et al. Aldiminium Cations as Countercations to Discrete Main Group Fluoroanions. ''Molecules''. 2023 Aug 27; '''28''' (17):
The genome of the colonial hydroid Hydractinia reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals. Description: Schnitzler, Christine E, et al. The genome of the colonial hydroid Hydractinia reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals. ''bioRxiv''. 2023 Aug 27;
Microbe transmission from pet shop to lab-reared zebrafish reveals a pathogenic birnavirus. Description: Rice, Marlen C, et al. Microbe transmission from pet shop to lab-reared zebrafish reveals a pathogenic birnavirus. ''bioRxiv''. 2023 Aug 28;
Multi-omics reveal microbial determinants impacting the treatment outcome of antidepressants in major depressive disorder. Description: Wang, Yaping, et al. Multi-omics reveal microbial determinants impacting the treatment outcome of antidepressants in major depressive disorder. ''Microbiome''. 2023 Aug 28; '''11''' (1):195
Whole Genome Sequence of Lactiplantibacillus plantarum HOM3204 and Its Antioxidant Effect on D-Galactose-Induced Aging in Mice. Description: Zhang, Di, et al. Whole Genome Sequence of Lactiplantibacillus plantarum HOM3204 and Its Antioxidant Effect on D-Galactose-Induced Aging in Mice. ''J Microbiol Biotechnol''. 2023 Aug 28; '''33''' (8):1030-1038
A microbial consortium alters intestinal Pseudomonadota and antimicrobial resistance genes in individuals with recurrent Clostridioides difficile infection. Description: Rooney, Ashley M, et al. A microbial consortium alters intestinal Pseudomonadota and antimicrobial resistance genes in individuals with recurrent Clostridioides difficile infection. ''mBio''. 2023 Aug 31; '''14''' (4):e0348222
Cervicovaginal Gardnerella sialidase-encoding gene in persistent human papillomavirus infection. Description: Novak, Juliano, et al. Cervicovaginal Gardnerella sialidase-encoding gene in persistent human papillomavirus infection. ''Sci Rep''. 2023 Aug 31; '''13''' (1):14266
Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components. Description: Duan, Changhai, et al. Diversity of Bathyarchaeia viruses in metagenomes and virus-encoded CRISPR system components. ''bioRxiv''. 2023 Aug 31;
Human milk oligosaccharides modulate the intestinal microbiome of healthy adults. Description: Jacobs, Jonathan P, et al. Human milk oligosaccharides modulate the intestinal microbiome of healthy adults. ''Sci Rep''. 2023 Aug 31; '''13''' (1):14308
Mining Public Data to Investigate the Virome of Neglected Pollinators and Other Floral Visitors. Description: de Santana, Sabrina Ferreira, et al. Mining Public Data to Investigate the Virome of Neglected Pollinators and Other Floral Visitors. ''Viruses''. 2023 Aug 31; '''15''' (9):
Unraveling the roles of coastal bacterial consortia in degradation of various lignocellulosic substrates. Description: Peng, Qiannan, et al. Unraveling the roles of coastal bacterial consortia in degradation of various lignocellulosic substrates. ''mSystems''. 2023 Aug 31; '''8''' (4):e0128322
A network embedding approach to identify active modules in biological interaction networks. Description: Pasquier, Claude, et al. A network embedding approach to identify active modules in biological interaction networks. ''Life Sci Alliance''. 2023 Sep; '''6''' (9):
Characterization and genomic analysis of a novel lytic phage vB_PstM_ZRG1 infecting Stutzerimonas stutzeri, representing a new viral genus, Elithevirus. Description: Chen, Ying, et al. Characterization and genomic analysis of a novel lytic phage vB_PstM_ZRG1 infecting Stutzerimonas stutzeri, representing a new viral genus, Elithevirus. ''Virus Res''. 2023 Sep; '''334''': 199183
Environmental selection and evolutionary process jointly shape genomic and functional profiles of mangrove rhizosphere microbiomes. Description: Yu, Xiaoli, et al. Environmental selection and evolutionary process jointly shape genomic and functional profiles of mangrove rhizosphere microbiomes. ''mLife''. 2023 Sep; '''2''' (3):253-266
Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil. Description: Giovanetti, Marta, et al. Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil. ''Sci Adv''. 2023 Sep; '''9''' (35):eadg9204
Genomic molecular epidemiology of carbapenemase-producing Escherichia coli ST410 isolates by complete genome analysis. Description: Kyung, Su Min, et al. Genomic molecular epidemiology of carbapenemase-producing Escherichia coli ST410 isolates by complete genome analysis. ''Vet Res''. 2023 Sep 1; '''54''' (1):72
Intestinal microbiota links to allograft stability after lung transplantation: a prospective cohort study. Description: Wu, Junqi, et al. Intestinal microbiota links to allograft stability after lung transplantation: a prospective cohort study. ''Signal Transduct Target Ther''. 2023 Sep 1; '''8''' (1):326
Modification of HEART Pathway for Patients With Chest Pain: A Korean Perspective. Description: Chae, Bora, et al. Modification of HEART Pathway for Patients With Chest Pain: A Korean Perspective. ''Korean Circ J''. 2023 Sep; '''53''' (9):635-644
Multiple infections of zoonotic pathogens in wild Brandt's voles (Lasiopodomys brandtii). Description: Guo, Yongman, et al. Multiple infections of zoonotic pathogens in wild Brandt's voles (Lasiopodomys brandtii). ''Vet Med Sci''. 2023 Sep; '''9''' (5):2201-2211
Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor. Description: Xing, Jiawei, et al. Origin and functional diversification of PAS domain, a ubiquitous intracellular sensor. ''Sci Adv''. 2023 Sep; '''9''' (35):eadi4517
Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens. Description: Garrido-Sanz, Daniel, et al. Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens. ''ISME J''. 2023 Sep; '''17''' (9):1369-1381
Seasonal dynamics of the wild rodent faecal virome. Description: Raghwani, Jayna, et al. Seasonal dynamics of the wild rodent faecal virome. ''Mol Ecol''. 2023 Sep; '''32''' (17):4763-4776
Short-term dietary changes can result in mucosal and systemic immune depression. Description: Siracusa, Francesco, et al. Short-term dietary changes can result in mucosal and systemic immune depression. ''Nat Immunol''. 2023 Sep; '''24''' (9):1473-1486
Telomere-to-telomere haplotype-resolved reference genome reveals subgenome divergence and disease resistance in triploid Cavendish banana. Description: Huang, Hui-Run, et al. Telomere-to-telomere haplotype-resolved reference genome reveals subgenome divergence and disease resistance in triploid Cavendish banana. ''Hortic Res''. 2023 Sep; '''10''' (9):uhad153
Temporal Changes in Coronary (18)F-Fluoride Plaque Uptake in Patients with Coronary Atherosclerosis. Description: Daghem, Marwa, et al. Temporal Changes in Coronary (18)F-Fluoride Plaque Uptake in Patients with Coronary Atherosclerosis. ''J Nucl Med''. 2023 Sep; '''64''' (9):1478-1486
Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes. Description: Yamabe, Takahiro, et al. Chromosomal-level Genome Assembly of the Coffee Bee Hawk Moth Reveals the Evolution of Chromosomes and the Molecular Basis of Distinct Phenotypes. ''Genome Biol Evol''. 2023 Sep 4; '''15''' (9):
I am better than I look: genome based safety assessment of the probiotic Lactiplantibacillus plantarum IS-10506. Description: Umanets, Alexander, et al. I am better than I look: genome based safety assessment of the probiotic Lactiplantibacillus plantarum IS-10506. ''BMC Genomics''. 2023 Sep 4; '''24''' (1):518
Serratia marcescens Outbreak at a Correctional Facility: Environmental Sampling, Laboratory Analyses and Genomic Characterization to Assess Sources and Persistence. Description: Ferguson, Donna, et al. Serratia marcescens Outbreak at a Correctional Facility: Environmental Sampling, Laboratory Analyses and Genomic Characterization to Assess Sources and Persistence. ''Int J Environ Res Public Health''. 2023 Sep 4; '''20''' (17):
Analysis of gut microbiota in chinese donkey in different regions using metagenomic sequencing. Description: Guo, Rong, et al. Analysis of gut microbiota in chinese donkey in different regions using metagenomic sequencing. ''BMC Genomics''. 2023 Sep 5; '''24''' (1):524
Glycerol biosynthetic pathway plays an essential role in proliferation and antioxidative defense in the human enteric protozoan parasite Entamoeba histolytica. Description: Jeelani, Ghulam, et al. Glycerol biosynthetic pathway plays an essential role in proliferation and antioxidative defense in the human enteric protozoan parasite Entamoeba histolytica. ''Sci Rep''. 2023 Sep 5; '''13''' (1):14596
Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses. Description: Pan, Yuan-Fei, et al. Metagenomic analysis of individual mosquitos reveals the ecology of insect viruses. ''bioRxiv''. 2023 Sep 5;
Chromosome level genome assembly of oriental armyworm Mythimna separata. Description: Xu, Chao, et al. Chromosome level genome assembly of oriental armyworm Mythimna separata. ''Sci Data''. 2023 Sep 8; '''10''' (1):597
Gut microbes exacerbate systemic inflammation and behavior disorders in neurologic disease CADASIL. Description: Liu, Sheng, et al. Gut microbes exacerbate systemic inflammation and behavior disorders in neurologic disease CADASIL. ''Microbiome''. 2023 Sep 8; '''11''' (1):202
One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade. Description: Blaz, Jazmin, et al. One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade. ''Sci Data''. 2023 Sep 9; '''10''' (1):603
Identification and characterization of novel alphacoronaviruses in Tadarida brasiliensis (Chiroptera, Molossidae) from Argentina: insights into recombination as a mechanism favoring bat coronavirus cross-species transmission. Description: Cerri, Agustina, et al. Identification and characterization of novel alphacoronaviruses in Tadarida brasiliensis (Chiroptera, Molossidae) from Argentina: insights into recombination as a mechanism favoring bat coronavirus cross-species transmission. ''Microbiol Spectr''. 2023 Sep 11; '''11''' (5):e0204723
Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris. Description: Macedo, Diego H, et al. Diversity of RNA viruses in the cosmopolitan monoxenous trypanosomatid Leptomonas pyrrhocoris. ''BMC Biol''. 2023 Sep 12; '''21''' (1):191
Bridging the Gap: Combining Genomics and Transcriptomics Approaches to Understand Stylosanthes scabra, an Orphan Legume from the Brazilian Caatinga. Description: Ferreira-Neto, Jose Ribamar Costa, et al. Bridging the Gap: Combining Genomics and Transcriptomics Approaches to Understand Stylosanthes scabra, an Orphan Legume from the Brazilian Caatinga. ''Plants (Basel)''. 2023 Sep 13; '''12''' (18):
Genome-wide analysis of the AP2/ERF gene family in Tritipyrum and the response of TtERF_B2-50 in salt-tolerance. Description: Liu, Xiaojuan, et al. Genome-wide analysis of the AP2/ERF gene family in Tritipyrum and the response of TtERF_B2-50 in salt-tolerance. ''BMC Genomics''. 2023 Sep 13; '''24''' (1):541
Transcriptomic and genomic identification of spliceosomal genes from Euglena gracilis. Description: Gao, Pingwei, et al. Transcriptomic and genomic identification of spliceosomal genes from Euglena gracilis. ''Acta Biochim Biophys Sin (Shanghai)''. 2023 Sep 13; '''55''' (11):1740-1748
Derivatives Incorporating Acridine, Pyrrole, and Thiazolidine Rings as Promising Antitumor Agents. Description: Garberova, Monika, et al. Derivatives Incorporating Acridine, Pyrrole, and Thiazolidine Rings as Promising Antitumor Agents. ''Molecules''. 2023 Sep 14; '''28''' (18):
Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions. Description: De Filippis, Francesca, et al. Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions. ''Microbiome''. 2023 Sep 14; '''11''' (1):205
A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean. Description: Liu, Haodong, et al. A moderately thermophilic origin of a novel family of marine group II euryarchaeota from deep ocean. ''iScience''. 2023 Sep 15; '''26''' (9):107664
Crystallization as a selection force at the polymerization of nucleotides in a prebiotic context. Description: Sponer, Judit E, et al. Crystallization as a selection force at the polymerization of nucleotides in a prebiotic context. ''iScience''. 2023 Sep 15; '''26''' (9):107600
Metagenomic analysis reveals the dissemination mechanisms and risks of resistance genes in plateau lakes. Description: Mao, Chengzhi, et al. Metagenomic analysis reveals the dissemination mechanisms and risks of resistance genes in plateau lakes. ''iScience''. 2023 Sep 15; '''26''' (9):107508
Peeling back the layers of coral holobiont multi-omics data. Description: Williams, Amanda, et al. Peeling back the layers of coral holobiont multi-omics data. ''iScience''. 2023 Sep 15; '''26''' (9):107623
Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi. Description: Stajich, Jason E, et al. Signatures of transposon-mediated genome inflation, host specialization, and photoentrainment in Entomophthora muscae and allied entomophthoralean fungi. ''bioRxiv''. 2023 Sep 16;
Diverse signatures of convergent evolution in cacti-associated yeasts. Description: Goncalves, Carla, et al. Diverse signatures of convergent evolution in cacti-associated yeasts. ''bioRxiv''. 2023 Sep 17;
Bacteriophages limitedly contribute to the antimicrobial resistome of microbial communities in wastewater treatment plants. Description: Sabatino, Raffaella, et al. Bacteriophages limitedly contribute to the antimicrobial resistome of microbial communities in wastewater treatment plants. ''Microbiol Spectr''. 2023 Sep 19; '''11''' (5):e0110123
Highly divergent CRESS DNA and picorna-like viruses associated with bleached thalli of the green seaweed Ulva. Description: van der Loos, Luna M, et al. Highly divergent CRESS DNA and picorna-like viruses associated with bleached thalli of the green seaweed Ulva. ''Microbiol Spectr''. 2023 Sep 19; '''11''' (5):e0025523
Integrated meta-omics approaches reveal Saccharopolyspora as the core functional genus in huangjiu fermentations. Description: Liu, Shuangping, et al. Integrated meta-omics approaches reveal Saccharopolyspora as the core functional genus in huangjiu fermentations. ''NPJ Biofilms Microbiomes''. 2023 Sep 19; '''9''' (1):65
Unfolding the secrets of microbiome (Symbiodiniaceae and bacteria) in cold-water coral. Description: Gong, Sanqiang, et al. Unfolding the secrets of microbiome (Symbiodiniaceae and bacteria) in cold-water coral. ''Microbiol Spectr''. 2023 Sep 20; '''11''' (5):e0131523
Innovative strategy for the conservation of a millennial mausoleum from biodeterioration through artificial light management. Description: Bao, Yuanyuan, et al. Innovative strategy for the conservation of a millennial mausoleum from biodeterioration through artificial light management. ''NPJ Biofilms Microbiomes''. 2023 Sep 23; '''9''' (1):69
Phylogenetic diversity and functional potential of the microbial communities along the Bay of Bengal coast. Description: Akter, Salma, et al. Phylogenetic diversity and functional potential of the microbial communities along the Bay of Bengal coast. ''Sci Rep''. 2023 Sep 25; '''13''' (1):15976
Artificial switches induce the bespoke production of functional compounds in marine microalgae Chlorella by neutralizing CO(2). Description: Gu, Jiahua, et al. Artificial switches induce the bespoke production of functional compounds in marine microalgae Chlorella by neutralizing CO(2). ''Biotechnol Biofuels Bioprod''. 2023 Sep 27; '''16''' (1):143
The gut metabolite 3-hydroxyphenylacetic acid rejuvenates spermatogenic dysfunction in aged mice through GPX4-mediated ferroptosis. Description: Jin, Zirun, et al. The gut metabolite 3-hydroxyphenylacetic acid rejuvenates spermatogenic dysfunction in aged mice through GPX4-mediated ferroptosis. ''Microbiome''. 2023 Sep 27; '''11''' (1):212
The presence of benzene ring activating CoA ligases for aromatics degradation in the ANaerobic MEthanotrophic (ANME) archaea. Description: Liu, Wei-Wei, et al. The presence of benzene ring activating CoA ligases for aromatics degradation in the ANaerobic MEthanotrophic (ANME) archaea. ''Microbiol Spectr''. 2023 Sep 27; '''11''' (5):e0176623
Efficient gene orthology inference via large-scale rearrangements. Description: Rubert, Diego P, et al. Efficient gene orthology inference via large-scale rearrangements. ''Algorithms Mol Biol''. 2023 Sep 28; '''18''' (1):14
A repertoire of candidate effector proteins of the fungus Ceratocystis cacaofunesta. Description: Ramos-Lizardo, Gabriela N, et al. A repertoire of candidate effector proteins of the fungus Ceratocystis cacaofunesta. ''Sci Rep''. 2023 Sep 29; '''13''' (1):16368
Multi-omics revealed the long-term effect of ruminal keystone bacteria and the microbial metabolome on lactation performance in adult dairy goats. Description: Wang, Dangdang, et al. Multi-omics revealed the long-term effect of ruminal keystone bacteria and the microbial metabolome on lactation performance in adult dairy goats. ''Microbiome''. 2023 Sep 29; '''11''' (1):215
Unbiased multitissue transcriptomic analysis reveals complex neuroendocrine regulatory networks mediated by spinal cord injury-induced immunodeficiency. Description: Zeng, Hong, et al. Unbiased multitissue transcriptomic analysis reveals complex neuroendocrine regulatory networks mediated by spinal cord injury-induced immunodeficiency. ''J Neuroinflammation''. 2023 Sep 30; '''20''' (1):219
Akkermansia muciniphila participates in the host protection against helminth-induced cardiac fibrosis via TLR2. Description: Wang, Jiaqi, et al. Akkermansia muciniphila participates in the host protection against helminth-induced cardiac fibrosis via TLR2. ''PLoS Pathog''. 2023 Oct; '''19''' (10):e1011683
Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits. Description: Zhang, Suyu, et al. Chromosome-level genome of butterflyfish unveils genomic features of unique colour patterns and morphological traits. ''DNA Res''. 2023 Oct 1; '''30''' (5):
Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species. Description: Fareed, Fathmath Shaman, et al. Data of de novo assembly and functional annotation of transcriptome of Peninsular Malaysian Amomum Roxb. species. ''Data Brief''. 2023 Oct; '''50''': 109507
Dietary neoagarotetraose extends lifespan and impedes brain aging in mice via regulation of microbiota-gut-brain axis. Description: Li, Tao, et al. Dietary neoagarotetraose extends lifespan and impedes brain aging in mice via regulation of microbiota-gut-brain axis. ''J Adv Res''. 2023 Oct; '''52''': 119-134
Does the Use of Different Types of Probiotics Possess Detoxification Properties Against Aflatoxins Contamination in Rabbit Diets? Description: Mohamed, Said I A, et al. Does the Use of Different Types of Probiotics Possess Detoxification Properties Against Aflatoxins Contamination in Rabbit Diets? ''Probiotics Antimicrob Proteins''. 2023 Oct; '''15''' (5):1382-1392
Evolution of RNA viruses in trypanosomatids: new insights from the analysis of Sauroleishmania. Description: Klocek, Donnamae, et al. Evolution of RNA viruses in trypanosomatids: new insights from the analysis of Sauroleishmania. ''Parasitol Res''. 2023 Oct; '''122''' (10):2279-2286
Extreme summers impact cropland and grassland soil microbiomes. Description: Bei, Qicheng, et al. Extreme summers impact cropland and grassland soil microbiomes. ''ISME J''. 2023 Oct; '''17''' (10):1589-1600
Mycobacteriaceae Phenome Atlas (MPA): A Standardized Atlas for the Mycobacteriaceae Phenome Based on Heterogeneous Sources. Description: Liu, Wan, et al. Mycobacteriaceae Phenome Atlas (MPA): A Standardized Atlas for the Mycobacteriaceae Phenome Based on Heterogeneous Sources. ''Phenomics''. 2023 Oct; '''3''' (5):439-456
Panax ginseng ameliorates hepatorenal oxidative alterations induced by commercially used cypermethrin in male rats: experimental and molecular docking approaches. Description: Elblehi, Samar S, et al. Panax ginseng ameliorates hepatorenal oxidative alterations induced by commercially used cypermethrin in male rats: experimental and molecular docking approaches. ''Environ Sci Pollut Res Int''. 2023 Oct; '''30''' (50):109702-109723
Prevotella copri alleviates sarcopenia via attenuating muscle mass loss and function decline. Description: Liu, Xiaolei, et al. Prevotella copri alleviates sarcopenia via attenuating muscle mass loss and function decline. ''J Cachexia Sarcopenia Muscle''. 2023 Oct; '''14''' (5):2275-2288
Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family. Description: Alarcon-Schumacher, Tomas, et al. Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family. ''PLoS Genet''. 2023 Oct; '''19''' (10):e1010998
Single-cell transcriptome and metagenome profiling reveals the genetic basis of rumen functions and convergent developmental patterns in ruminants. Description: Deng, Juan, et al. Single-cell transcriptome and metagenome profiling reveals the genetic basis of rumen functions and convergent developmental patterns in ruminants. ''Genome Res''. 2023 Oct; '''33''' (10):1690-1707
Sulforaphane-driven reprogramming of gut microbiome and metabolome ameliorates the progression of hyperuricemia. Description: Wang, Ruoyu, et al. Sulforaphane-driven reprogramming of gut microbiome and metabolome ameliorates the progression of hyperuricemia. ''J Adv Res''. 2023 Oct; '''52''': 19-28
Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon. Description: Sato, Mitsuhiko P, et al. Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon. ''DNA Res''. 2023 Oct 1; '''30''' (5):
The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation. Description: Li, Zhengcao, et al. The pig pangenome provides insights into the roles of coding structural variations in genetic diversity and adaptation. ''Genome Res''. 2023 Oct; '''33''' (10):1833-1847
Trichomonas vaginalis adherence phenotypes and extracellular vesicles impact parasite survival in a novel in vivo model of pathogenesis. Description: Molgora, Brenda M, et al. Trichomonas vaginalis adherence phenotypes and extracellular vesicles impact parasite survival in a novel in vivo model of pathogenesis. ''PLoS Negl Trop Dis''. 2023 Oct; '''17''' (10):e0011693
Virus-pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal. Description: Chen, Tianyi, et al. Virus-pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal. ''ISME J''. 2023 Oct; '''17''' (10):1719-1732
Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests. Description: Zeng, Qingchao, et al. Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests. ''Microbiome''. 2023 Oct 2; '''11''' (1):217
Synechococcus nitrogen gene loss in iron-limited ocean regions. Description: Sharpe, Garrett, et al. Synechococcus nitrogen gene loss in iron-limited ocean regions. ''ISME Commun''. 2023 Oct 2; '''3''' (1):107
Angelica polysaccharides relieve blood glucose levels in diabetic KKAy mice possibly by modulating gut microbiota: an integrated gut microbiota and metabolism analysis. Description: Tang, Xiaolong, et al. Angelica polysaccharides relieve blood glucose levels in diabetic KKAy mice possibly by modulating gut microbiota: an integrated gut microbiota and metabolism analysis. ''BMC Microbiol''. 2023 Oct 3; '''23''' (1):281
Effect on the Skin Microbiota of Oral Minocycline for Rosacea. Description: Zhang, Yiyi, et al. Effect on the Skin Microbiota of Oral Minocycline for Rosacea. ''Acta Derm Venereol''. 2023 Oct 3; '''103''': adv10331
Genome-wide identification, comparative analysis and functional roles in flavonoid biosynthesis of cytochrome P450 superfamily in pear (Pyrus spp.). Description: Zhang, Wei, et al. Genome-wide identification, comparative analysis and functional roles in flavonoid biosynthesis of cytochrome P450 superfamily in pear (Pyrus spp.). ''BMC Genom Data''. 2023 Oct 3; '''24''' (1):58
Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K. Description: Parker, Matthew T, et al. Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K. ''Elife''. 2023 Oct 3; '''12''':
The Multifaceted Effects of Short-Term Acute Hypoxia Stress: Insights into the Tolerance Mechanism of Propsilocerus akamusi (Diptera: Chironomidae). Description: Zhang, Yao, et al. The Multifaceted Effects of Short-Term Acute Hypoxia Stress: Insights into the Tolerance Mechanism of Propsilocerus akamusi (Diptera: Chironomidae). ''Insects''. 2023 Oct 3; '''14''' (10):
Homologous Pairs of Low and High Temperature Originating Proteins Spanning the Known Prokaryotic Universe. Description: Komp, Evan, et al. Homologous Pairs of Low and High Temperature Originating Proteins Spanning the Known Prokaryotic Universe. ''Sci Data''. 2023 Oct 7; '''10''' (1):682
Marine viruses disperse bidirectionally along the natural water cycle. Description: Rahlff, Janina, et al. Marine viruses disperse bidirectionally along the natural water cycle. ''Nat Commun''. 2023 Oct 10; '''14''' (1):6354
Model-driven characterization of functional diversity of Pseudomonas aeruginosa clinical isolates with broadly representative phenotypes. Description: Islam, Mohammad Mazharul, et al. Model-driven characterization of functional diversity of Pseudomonas aeruginosa clinical isolates with broadly representative phenotypes. ''bioRxiv''. 2023 Oct 10;
De novo transcriptome profiling and development of novel secondary metabolites based genic SSRs in medicinal plant Phyllanthus emblica L. (Aonla). Description: Kapoor, Bhuvnesh, et al. De novo transcriptome profiling and development of novel secondary metabolites based genic SSRs in medicinal plant Phyllanthus emblica L. (Aonla). ''Sci Rep''. 2023 Oct 12; '''13''' (1):17319
Metagenome-wide analysis uncovers gut microbial signatures and implicates taxon-specific functions in end-stage renal disease. Description: Zhang, Pan, et al. Metagenome-wide analysis uncovers gut microbial signatures and implicates taxon-specific functions in end-stage renal disease. ''Genome Biol''. 2023 Oct 12; '''24''' (1):226
Globally distributed Myxococcota with photosynthesis gene clusters illuminate the origin and evolution of a potentially chimeric lifestyle. Description: Li, Liuyang, et al. Globally distributed Myxococcota with photosynthesis gene clusters illuminate the origin and evolution of a potentially chimeric lifestyle. ''Nat Commun''. 2023 Oct 13; '''14''' (1):6450
Coexistence of specialist and generalist species within mixed plastic derivative-utilizing microbial communities. Description: Schaerer, Laura, et al. Coexistence of specialist and generalist species within mixed plastic derivative-utilizing microbial communities. ''Microbiome''. 2023 Oct 14; '''11''' (1):224
Comparative Genomic Analysis and Metabolic Potential Profiling of a Novel Culinary-Medicinal Mushroom, Hericium rajendrae (Basidiomycota). Description: Wei, Jing, et al. Comparative Genomic Analysis and Metabolic Potential Profiling of a Novel Culinary-Medicinal Mushroom, Hericium rajendrae (Basidiomycota). ''J Fungi (Basel)''. 2023 Oct 15; '''9''' (10):
Distantly related Alteromonas bacteriophages share tail fibers exhibiting properties of transient chaperone caps. Description: Gonzalez-Serrano, Rafael, et al. Distantly related Alteromonas bacteriophages share tail fibers exhibiting properties of transient chaperone caps. ''Nat Commun''. 2023 Oct 16; '''14''' (1):6517
Genomic Characteristics and Comparative Genomics Analysis of the Endophytic Fungus Paraphoma chrysanthemicola DS-84 Isolated from Codonopsis pilosula Root. Description: Sun, Wenbin, et al. Genomic Characteristics and Comparative Genomics Analysis of the Endophytic Fungus Paraphoma chrysanthemicola DS-84 Isolated from Codonopsis pilosula Root. ''J Fungi (Basel)''. 2023 Oct 16; '''9''' (10):
Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology. Description: Kosmopoulos, James C, et al. Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology. ''bioRxiv''. 2023 Oct 17;
De novo transcriptome assembly of an Antarctic nematode for the study of thermal adaptation in marine parasites. Description: Palomba, Marialetizia, et al. De novo transcriptome assembly of an Antarctic nematode for the study of thermal adaptation in marine parasites. ''Sci Data''. 2023 Oct 19; '''10''' (1):720
Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution. Description: Cumsille, Andres, et al. Exploring the biosynthetic gene clusters in Brevibacterium: a comparative genomic analysis of diversity and distribution. ''BMC Genomics''. 2023 Oct 19; '''24''' (1):622
The energy metabolism of Balantidium polyvacuolum inhabiting the hindgut of Xenocypris davidi. Description: Bu, Xia-Lian, et al. The energy metabolism of Balantidium polyvacuolum inhabiting the hindgut of Xenocypris davidi. ''BMC Genomics''. 2023 Oct 19; '''24''' (1):624
Comparison of Oral Microbial Composition and Determinants Encoding Antimicrobial Resistance in Dogs and Their Owners. Description: Sakarnyte, Laura, et al. Comparison of Oral Microbial Composition and Determinants Encoding Antimicrobial Resistance in Dogs and Their Owners. ''Antibiotics (Basel)''. 2023 Oct 20; '''12''' (10):
Effect of Lactobacillus salivarius SNK-6 on egg quality, intestinal morphology, and cecal microbial community of laying hens. Description: Liu, Wei, et al. Effect of Lactobacillus salivarius SNK-6 on egg quality, intestinal morphology, and cecal microbial community of laying hens. ''Poult Sci''. 2023 Oct 21; '''103''' (1):103224
Global diversity and biogeography of DNA viral communities in activated sludge systems. Description: Fan, Xiangyu, et al. Global diversity and biogeography of DNA viral communities in activated sludge systems. ''Microbiome''. 2023 Oct 21; '''11''' (1):234
Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control. Description: Honda, Kenya, et al. Rationally-defined microbial consortia suppress multidrug-resistant proinflammatory Enterobacteriaceae via ecological control. ''Res Sq''. 2023 Oct 23;
Infants exposed in utero to Hurricane Maria have gut microbiomes with reduced diversity and altered metabolic capacity. Description: Zhang, Ai, et al. Infants exposed in utero to Hurricane Maria have gut microbiomes with reduced diversity and altered metabolic capacity. ''mSphere''. 2023 Oct 24; '''8''' (5):e0013423
Untangling an insect's virome from its endogenous viral elements. Description: Rozo-Lopez, Paula, et al. Untangling an insect's virome from its endogenous viral elements. ''BMC Genomics''. 2023 Oct 24; '''24''' (1):636
Virome of high-altitude canine digestive tract and genetic characterization of novel viruses potentially threatening human health. Description: Jiang, Xiaojie, et al. Virome of high-altitude canine digestive tract and genetic characterization of novel viruses potentially threatening human health. ''mSphere''. 2023 Oct 24; '''8''' (5):e0034523
Protein Language Models Uncover Carbohydrate-Active Enzyme Function in Metagenomics. Description: Thurimella, Kumar, et al. Protein Language Models Uncover Carbohydrate-Active Enzyme Function in Metagenomics. ''bioRxiv''. 2023 Oct 25;
Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals. Description: Guo, Xiaoyan, et al. Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals. ''mSystems''. 2023 Oct 26; '''8''' (5):e0046723
Metagenomic and metabolomic analyses reveal the role of gut microbiome-associated metabolites in diarrhea calves. Description: Shi, Zhihai, et al. Metagenomic and metabolomic analyses reveal the role of gut microbiome-associated metabolites in diarrhea calves. ''mSystems''. 2023 Oct 26; '''8''' (5):e0058223
Metagenomics uncovers dietary adaptations for chitin digestion in the gut microbiota of convergent myrmecophagous mammals. Description: Teullet, Sophie, et al. Metagenomics uncovers dietary adaptations for chitin digestion in the gut microbiota of convergent myrmecophagous mammals. ''mSystems''. 2023 Oct 26; '''8''' (5):e0038823
Very early life microbiome and metabolome correlates with primary vaccination variability in children. Description: Shaffer, Michael, et al. Very early life microbiome and metabolome correlates with primary vaccination variability in children. ''mSystems''. 2023 Oct 26; '''8''' (5):e0066123
Stress-activated brain-gut circuits disrupt intestinal barrier integrity and social behaviour. Description: Russo, Scott, et al. Stress-activated brain-gut circuits disrupt intestinal barrier integrity and social behaviour. ''Res Sq''. 2023 Oct 27;
Combining Genetic and Transcriptomic Approaches to Identify Transporter-Coding Genes as Likely Responsible for a Repeatable Salt Tolerance QTL in Citrus. Description: Asins, Maria J, et al. Combining Genetic and Transcriptomic Approaches to Identify Transporter-Coding Genes as Likely Responsible for a Repeatable Salt Tolerance QTL in Citrus. ''Int J Mol Sci''. 2023 Oct 30; '''24''' (21):
Differences in Physiological Performance and Gut Microbiota between Deep-Sea and Coastal Aquaculture of Thachinotus Ovatus: A Metagenomic Approach. Description: Li, Shuangfei, et al. Differences in Physiological Performance and Gut Microbiota between Deep-Sea and Coastal Aquaculture of Thachinotus Ovatus: A Metagenomic Approach. ''Animals (Basel)''. 2023 Oct 30; '''13''' (21):
Diet-induced rewiring of the Wnt gene regulatory network connects aberrant splicing to fatty liver and liver cancer in DIAMOND mice. Description: Lopez-Perez, Ana, et al. Diet-induced rewiring of the Wnt gene regulatory network connects aberrant splicing to fatty liver and liver cancer in DIAMOND mice. ''Sci Rep''. 2023 Oct 31; '''13''' (1):18666
Endogenous Viral Elements in Ixodid Tick Genomes. Description: Barnes, Miranda, et al. Endogenous Viral Elements in Ixodid Tick Genomes. ''Viruses''. 2023 Oct 31; '''15''' (11):
The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S. Description: Hodgeman, Rachel, et al. The pan-genome of Mycobacterium avium subsp. paratuberculosis (Map) confirms ancestral lineage and reveals gene rearrangements within Map Type S. ''BMC Genomics''. 2023 Oct 31; '''24''' (1):656
Transcriptome analysis of Corvus splendens reveals a repertoire of antimicrobial peptides. Description: Kannoth, Shalini, et al. Transcriptome analysis of Corvus splendens reveals a repertoire of antimicrobial peptides. ''Sci Rep''. 2023 Oct 31; '''13''' (1):18728
A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment. Description: Madrigal-Trejo, David, et al. A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment. ''Microb Ecol''. 2023 Nov; '''86''' (4):2252-2270
Comparative analysis of mitochondrion-related organelles in anaerobic amoebozoans. Description: Zahonova, Kristina, et al. Comparative analysis of mitochondrion-related organelles in anaerobic amoebozoans. ''Microb Genom''. 2023 Nov; '''9''' (11):
Effects of dietary supplement with licorice and rutin mixture on production performance, egg quality, antioxidant capacity, and gut microbiota in quails (Turnix tanki). Description: Li, Yan, et al. Effects of dietary supplement with licorice and rutin mixture on production performance, egg quality, antioxidant capacity, and gut microbiota in quails (Turnix tanki). ''Poult Sci''. 2023 Nov; '''102''' (11):103038
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4. Description: Blanco-Miguez, Aitor, et al. Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4. ''Nat Biotechnol''. 2023 Nov; '''41''' (11):1633-1644
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding. Description: Xiong, Wei, et al. Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding. ''G3 (Bethesda)''. 2023 Nov 1; '''13''' (11):
Genomic analysis of Streptococcus pneumoniae serogroup 20 isolates in Alberta, Canada from 1993-2019. Description: Williams, Ashley N, et al. Genomic analysis of Streptococcus pneumoniae serogroup 20 isolates in Alberta, Canada from 1993-2019. ''Microb Genom''. 2023 Nov; '''9''' (11):
Intraspecific difference of Latilactobacillus sakei in inflammatory bowel diseases: Insights into potential mechanisms through comparative genomics and metabolomics analyses. Description: Liu, Yaru, et al. Intraspecific difference of Latilactobacillus sakei in inflammatory bowel diseases: Insights into potential mechanisms through comparative genomics and metabolomics analyses. ''Imeta''. 2023 Nov; '''2''' (4):e136
Metagenome-assembled genomes from High Arctic glaciers highlight the vulnerability of glacier-associated microbiota and their activities to habitat loss. Description: Hay, Melanie C, et al. Metagenome-assembled genomes from High Arctic glaciers highlight the vulnerability of glacier-associated microbiota and their activities to habitat loss. ''Microb Genom''. 2023 Nov; '''9''' (11):
Near-complete de novo assembly of Tricholoma bakamatsutake chromosomes revealed the structural divergence and differentiation of Tricholoma genomes. Description: Ichida, Hiroyuki, et al. Near-complete de novo assembly of Tricholoma bakamatsutake chromosomes revealed the structural divergence and differentiation of Tricholoma genomes. ''G3 (Bethesda)''. 2023 Nov 1; '''13''' (11):
Phylogenomic Analyses Reveal an Allopolyploid Origin of Core Didymocarpinae (Gesneriaceae) Followed by Rapid Radiation. Description: Yang, Lihua, et al. Phylogenomic Analyses Reveal an Allopolyploid Origin of Core Didymocarpinae (Gesneriaceae) Followed by Rapid Radiation. ''Syst Biol''. 2023 Nov 1; '''72''' (5):1064-1083
Signatures of Extreme Longevity: A Perspective from Bivalve Molecular Evolution. Description: Iannello, Mariangela, et al. Signatures of Extreme Longevity: A Perspective from Bivalve Molecular Evolution. ''Genome Biol Evol''. 2023 Nov 1; '''15''' (11):
The Diversity and Metabolism of Culturable Nitrate-Reducing Bacteria from the Photic Zone of the Western North Pacific Ocean. Description: Jiang, Zhichen, et al. The Diversity and Metabolism of Culturable Nitrate-Reducing Bacteria from the Photic Zone of the Western North Pacific Ocean. ''Microb Ecol''. 2023 Nov; '''86''' (4):2781-2789
Transcriptome Analysis Reveals the Molecular Mechanism and Responsive Genes of Waterlogging Stress in Actinidia deliciosa Planch Kiwifruit Plants. Description: Xing, Mengyun, et al. Transcriptome Analysis Reveals the Molecular Mechanism and Responsive Genes of Waterlogging Stress in Actinidia deliciosa Planch Kiwifruit Plants. ''Int J Mol Sci''. 2023 Nov 1; '''24''' (21):
Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin. Description: Bojanova, Diana P, et al. Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin. ''ISME J''. 2023 Nov; '''17''' (11):1828-1838
Construction of an Exudative Age-Related Macular Degeneration Diagnostic and Therapeutic Molecular Network Using Multi-Layer Network Analysis, a Fuzzy Logic Model, and Deep Learning Techniques: Are Retinal and Brain Neurodegenerative Disorders Related? Description: Latifi-Navid, Hamid, et al. Construction of an Exudative Age-Related Macular Degeneration Diagnostic and Therapeutic Molecular Network Using Multi-Layer Network Analysis, a Fuzzy Logic Model, and Deep Learning Techniques: Are Retinal and Brain Neurodegenerative Disorders Related? ''Pharmaceuticals (Basel)''. 2023 Nov 2; '''16''' (11):
Telomeric repeat evolution in the phylum Nematoda revealed by high-quality genome assemblies and subtelomere structures. Description: Lim, Jiseon, et al. Telomeric repeat evolution in the phylum Nematoda revealed by high-quality genome assemblies and subtelomere structures. ''Genome Res''. 2023 Nov 2; '''33''' (11):1947-57
Genomic signals of local adaptation in Picea crassifolia. Description: Feng, Shuo, et al. Genomic signals of local adaptation in Picea crassifolia. ''BMC Plant Biol''. 2023 Nov 3; '''23''' (1):534
Pithoviruses Are Invaded by Repeats That Contribute to Their Evolution and Divergence from Cedratviruses. Description: Rigou, Sofia, et al. Pithoviruses Are Invaded by Repeats That Contribute to Their Evolution and Divergence from Cedratviruses. ''Mol Biol Evol''. 2023 Nov 3; '''40''' (11):
Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly. Description: Su, Ying, et al. Bacterial quorum sensing orchestrates longitudinal interactions to shape microbiota assembly. ''Microbiome''. 2023 Nov 6; '''11''' (1):241
Genome-wide identification and expression analysis of the GASA gene family in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Description: Sun, Bingxin, et al. Genome-wide identification and expression analysis of the GASA gene family in Chinese cabbage (Brassica rapa L. ssp. pekinensis). ''BMC Genomics''. 2023 Nov 6; '''24''' (1):668
Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions. Description: Blanco-Miguez, Aitor, et al. Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions. ''Cell Host Microbe''. 2023 Nov 8; '''31''' (11):1804-1819.e9
Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. Description: Lampe, Robert H, et al. Short-term acidification promotes diverse iron acquisition and conservation mechanisms in upwelling-associated phytoplankton. ''Nat Commun''. 2023 Nov 8; '''14''' (1):7215
Gut butyrate-producers confer post-infarction cardiac protection. Description: Chen, Hung-Chih, et al. Gut butyrate-producers confer post-infarction cardiac protection. ''Nat Commun''. 2023 Nov 9; '''14''' (1):7249
Persistent effects of intramammary ceftiofur treatment on the gut microbiome and antibiotic resistance in dairy cattle. Description: Vasco, Karla A, et al. Persistent effects of intramammary ceftiofur treatment on the gut microbiome and antibiotic resistance in dairy cattle. ''Anim Microbiome''. 2023 Nov 9; '''5''' (1):56
Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution. Description: Larue, Graham E, et al. Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution. ''Nucleic Acids Res''. 2023 Nov 10; '''51''' (20):10884-10908
Role of Relebactam in the Antibiotic Resistance Acquisition in Pseudomonas aeruginosa: In Vitro Study. Description: Ventero, Maria Paz, et al. Role of Relebactam in the Antibiotic Resistance Acquisition in Pseudomonas aeruginosa: In Vitro Study. ''Antibiotics (Basel)''. 2023 Nov 11; '''12''' (11):
Chicken manure application alters microbial community structure and the distribution of antibiotic-resistance genes in rhizosphere soil of Cinnamomum camphora forests. Description: Chen, Deqiang, et al. Chicken manure application alters microbial community structure and the distribution of antibiotic-resistance genes in rhizosphere soil of Cinnamomum camphora forests. ''FEMS Microbiol Ecol''. 2023 Nov 13; '''99''' (12):
Delivery mode impacts gut bacteriophage colonization during infancy. Description: Subramanian, Poorani, et al. Delivery mode impacts gut bacteriophage colonization during infancy. ''medRxiv''. 2023 Nov 13;
Functional annotation of enzyme-encoding genes using deep learning with transformer layers. Description: Kim, Gi Bae, et al. Functional annotation of enzyme-encoding genes using deep learning with transformer layers. ''Nat Commun''. 2023 Nov 14; '''14''' (1):7370
Phylogenetically and metabolically diverse autotrophs in the world's deepest blue hole. Description: Chen, Xing, et al. Phylogenetically and metabolically diverse autotrophs in the world's deepest blue hole. ''ISME Commun''. 2023 Nov 14; '''3''' (1):117
The expanding range of emerging tick-borne viruses in Eastern Europe and the Black Sea Region. Description: Ergunay, Koray, et al. The expanding range of emerging tick-borne viruses in Eastern Europe and the Black Sea Region. ''Sci Rep''. 2023 Nov 14; '''13''' (1):19824
Effects of Deformed Wing Virus-Targeting dsRNA on Viral Loads in Bees Parasitised and Non-Parasitised by Varroa destructor. Description: Smeele, Zoe E, et al. Effects of Deformed Wing Virus-Targeting dsRNA on Viral Loads in Bees Parasitised and Non-Parasitised by Varroa destructor. ''Viruses''. 2023 Nov 15; '''15''' (11):
A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes. Description: Goodheart, Jessica A, et al. A chromosome-level genome for the nudibranch gastropod Berghia stephanieae helps parse clade-specific gene expression in novel and conserved phenotypes. ''bioRxiv''. 2023 Nov 16;
A large-scale assessment of sequence database search tools for homology-based protein function prediction. Description: Zhang, Chengxin, et al. A large-scale assessment of sequence database search tools for homology-based protein function prediction. ''bioRxiv''. 2023 Nov 16;
Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species. Description: Lou, Yue Clare, et al. Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species. ''Nat Commun''. 2023 Nov 16; '''14''' (1):7417
ATP synthase evolution on a cross-braced dated tree of life. Description: Mahendrarajah, Tara A, et al. ATP synthase evolution on a cross-braced dated tree of life. ''Nat Commun''. 2023 Nov 17; '''14''' (1):7456
Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient. Description: Wang, Cong, et al. Bacterial genome size and gene functional diversity negatively correlate with taxonomic diversity along a pH gradient. ''Nat Commun''. 2023 Nov 17; '''14''' (1):7437
Oligoagars and microbial agents show potential for Porphyra disease prevention. Description: Ke, Lei, et al. Oligoagars and microbial agents show potential for Porphyra disease prevention. ''AMB Express''. 2023 Nov 17; '''13''' (1):128
Genomic analysis of the marine yeast Rhodotorula sphaerocarpa ETNP2018 reveals adaptation to the open ocean. Description: Lane, Dylan M, et al. Genomic analysis of the marine yeast Rhodotorula sphaerocarpa ETNP2018 reveals adaptation to the open ocean. ''BMC Genomics''. 2023 Nov 20; '''24''' (1):695
Hybrid assemblies of microbiome Blastocystis protists reveal evolutionary diversification reflecting host ecology. Description: Lind, Abigail L, et al. Hybrid assemblies of microbiome Blastocystis protists reveal evolutionary diversification reflecting host ecology. ''bioRxiv''. 2023 Nov 20;
Metallacages with 2,6-dipicolinoylbis(N,N-dialkylthioureas) as novel platforms in nuclear medicine for (68)Ga, (177)Lu and (198)Au. Description: Baitullina, Anna, et al. Metallacages with 2,6-dipicolinoylbis(N,N-dialkylthioureas) as novel platforms in nuclear medicine for (68)Ga, (177)Lu and (198)Au. ''EJNMMI Radiopharm Chem''. 2023 Nov 20; '''8''' (1):40
Unraveling the complex evolutionary history of lepidopteran chromosomes through ancestral chromosome reconstruction and novel chromosome nomenclature. Description: Chen, Xi, et al. Unraveling the complex evolutionary history of lepidopteran chromosomes through ancestral chromosome reconstruction and novel chromosome nomenclature. ''BMC Biol''. 2023 Nov 20; '''21''' (1):265
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. Description: Pettersen, Jakob P, et al. Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. ''BMC Bioinformatics''. 2023 Nov 21; '''24''' (1):438
Viral Diversity in Benthic Abyssal Ecosystems: Ecological and Methodological Considerations. Description: Rosani, Umberto, et al. Viral Diversity in Benthic Abyssal Ecosystems: Ecological and Methodological Considerations. ''Viruses''. 2023 Nov 21; '''15''' (12):
De novo transcriptome assembly of Dalbergia sissoo Roxb. (Fabaceae) under Botryodiplodia theobromae-induced dieback disease. Description: Zafar, Ummul Buneen, et al. De novo transcriptome assembly of Dalbergia sissoo Roxb. (Fabaceae) under Botryodiplodia theobromae-induced dieback disease. ''Sci Rep''. 2023 Nov 22; '''13''' (1):20503
Monoterpene glucosides in Eustoma grandiflorum roots promote hyphal branching in arbuscular mycorrhizal fungi. Description: Tominaga, Takaya, et al. Monoterpene glucosides in Eustoma grandiflorum roots promote hyphal branching in arbuscular mycorrhizal fungi. ''Plant Physiol''. 2023 Nov 22; '''193''' (4):2677-2690
Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations. Description: Zhang, Ren-Gang, et al. Subgenome phasing for complex allopolyploidy: case-based benchmarking and recommendations. ''Brief Bioinform''. 2023 Nov 22; '''25''' (1):
Distributed genotyping and clustering of Neisseria strains reveal continual emergence of epidemic meningococcus over a century. Description: Zhong, Ling, et al. Distributed genotyping and clustering of Neisseria strains reveal continual emergence of epidemic meningococcus over a century. ''Nat Commun''. 2023 Nov 24; '''14''' (1):7706
Learning sequence, structure, and function representations of proteins with language models. Description: Hamamsy, Tymor, et al. Learning sequence, structure, and function representations of proteins with language models. ''bioRxiv''. 2023 Nov 26;
Host translation machinery is not a barrier to phages that interact with both CPR and non-CPR bacteria. Description: Liu, Jett, et al. Host translation machinery is not a barrier to phages that interact with both CPR and non-CPR bacteria. ''mBio''. 2023 Nov 27; '''14''' (6):e0176623
RNA is a key component of extracellular DNA networks in Pseudomonas aeruginosa biofilms. Description: Mugunthan, Sudarsan, et al. RNA is a key component of extracellular DNA networks in Pseudomonas aeruginosa biofilms. ''Nat Commun''. 2023 Nov 27; '''14''' (1):7772
StORF-Reporter: finding genes between genes. Description: Dimonaco, Nicholas J, et al. StORF-Reporter: finding genes between genes. ''Nucleic Acids Res''. 2023 Nov 27; '''51''' (21):11504-11517
Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. Description: Oliver, Aaron, et al. Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. ''bioRxiv''. 2023 Nov 28;
iCAZyGFADB: an insect CAZyme and gene function annotation database. Description: iCAZyGFADB: an insect CAZyme and gene function annotation database. ''''. 2023 Nov 28; '''2023''':
Active viral infection during blooms of a dinoflagellate indicates dinoflagellate-viral co-adaptation. Description: Wang, Jingtian, et al. Active viral infection during blooms of a dinoflagellate indicates dinoflagellate-viral co-adaptation. ''Appl Environ Microbiol''. 2023 Nov 29; '''89''' (11):e0115623
Marine toxin domoic acid alters nitrogen cycling in sediments. Description: Li, Zelong, et al. Marine toxin domoic acid alters nitrogen cycling in sediments. ''Nat Commun''. 2023 Nov 30; '''14''' (1):7873
A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization. Description: Tubergen, Philip J, et al. A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization. ''PLoS Comput Biol''. 2023 Dec; '''19''' (12):e1011651
Alterations in gut virome are associated with cognitive function and minimal hepatic encephalopathy cross-sectionally and longitudinally in cirrhosis. Description: Jinato, Thananya, et al. Alterations in gut virome are associated with cognitive function and minimal hepatic encephalopathy cross-sectionally and longitudinally in cirrhosis. ''Gut Microbes''. 2023 Dec; '''15''' (2):2288168
Alterations of milk oligosaccharides in mothers with gestational diabetes mellitus impede colonization of beneficial bacteria and development of RORgammat(+) Treg cell-mediated immune tolerance in neonates. Description: Li, Xinke, et al. Alterations of milk oligosaccharides in mothers with gestational diabetes mellitus impede colonization of beneficial bacteria and development of RORgammat(+) Treg cell-mediated immune tolerance in neonates. ''Gut Microbes''. 2023 Dec; '''15''' (2):2256749
APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families. Description: Cadena-Caballero, Cristian E, et al. APGW/AKH Precursor from Rotifer Brachionus plicatilis and the DNA Loss Model Explain Evolutionary Trends of the Neuropeptide LWamide, APGWamide, RPCH, AKH, ACP, CRZ, and GnRH Families. ''J Mol Evol''. 2023 Dec; '''91''' (6):882-896
A photobioreactor for production of algae biomass from gaseous emissions of an animal house. Description: Glockow, Till, et al. A photobioreactor for production of algae biomass from gaseous emissions of an animal house. ''Appl Microbiol Biotechnol''. 2023 Dec; '''107''' (24):7673-7684
Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction. Description: Simon, Sophie A, et al. Dancing the Nanopore limbo - Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction. ''BMC Genomics''. 2023 Dec 1; '''24''' (1):727
Descriptions of one hundred new species of Hesperiidae. Description: Zhang, Jing, et al. Descriptions of one hundred new species of Hesperiidae. ''Insecta mundi''. 2023 Dec; '''1026''':
Engraftment of essential functions through multiple fecal microbiota transplants in chronic antibiotic-resistant pouchitis-a case study using metatranscriptomics. Description: Deng, Zhi-Luo, et al. Engraftment of essential functions through multiple fecal microbiota transplants in chronic antibiotic-resistant pouchitis-a case study using metatranscriptomics. ''Microbiome''. 2023 Dec 1; '''11''' (1):269
Escherichia coli triggers alpha-synuclein pathology in the LRRK2 transgenic mouse model of PD. Description: Liang, Dongxiao, et al. Escherichia coli triggers alpha-synuclein pathology in the LRRK2 transgenic mouse model of PD. ''Gut Microbes''. 2023 Dec; '''15''' (2):2276296
Functional characterization and structural basis of a reversible glycosyltransferase involves in plant chemical defence. Description: Cheng, Weijia, et al. Functional characterization and structural basis of a reversible glycosyltransferase involves in plant chemical defence. ''Plant Biotechnol J''. 2023 Dec; '''21''' (12):2611-2624
Gap-free genome assembly and CYP450 gene family analysis reveal the biosynthesis of anthocyanins in Scutellaria baicalensis. Description: Pei, Tianlin, et al. Gap-free genome assembly and CYP450 gene family analysis reveal the biosynthesis of anthocyanins in Scutellaria baicalensis. ''Hortic Res''. 2023 Dec; '''10''' (12):uhad235
Genomic and transcriptomic insights into complex virus-prokaryote interactions in marine biofilms. Description: Zhou, Kun, et al. Genomic and transcriptomic insights into complex virus-prokaryote interactions in marine biofilms. ''ISME J''. 2023 Dec; '''17''' (12):2303-2312
Genomics-based taxonomic rearrangement of Achlyodini and Carcharodini (Lepidoptera: Hesperiidae: Pyrginae). Description: Zhang, Jing, et al. Genomics-based taxonomic rearrangement of Achlyodini and Carcharodini (Lepidoptera: Hesperiidae: Pyrginae). ''Insecta mundi''. 2023 Dec; '''1016''':
Gut-immunity modulation in Lepidocephalichthys guntea during Aeromonas hydrophila-infection and recovery assessed with transcriptome data. Description: Basak, Chandana, et al. Gut-immunity modulation in Lepidocephalichthys guntea during Aeromonas hydrophila-infection and recovery assessed with transcriptome data. ''Heliyon''. 2023 Dec; '''9''' (12):e22936
IPOP: An Integrative Plant Multi-omics Platform for Cross-species Comparison and Evolutionary Study. Description: Huang, Wenyue, et al. IPOP: An Integrative Plant Multi-omics Platform for Cross-species Comparison and Evolutionary Study. ''Mol Biol Evol''. 2023 Dec 1; '''40''' (12):
Metatranscriptomic responses and microbial degradation of background polycyclic aromatic hydrocarbons in the coastal Mediterranean and Antarctica. Description: Martinez-Varela, Alicia, et al. Metatranscriptomic responses and microbial degradation of background polycyclic aromatic hydrocarbons in the coastal Mediterranean and Antarctica. ''Environ Sci Pollut Res Int''. 2023 Dec; '''30''' (57):119988-119999
Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments. Description: Tebbe, Dennis Alexander, et al. Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments. ''ISME J''. 2023 Dec; '''17''' (12):2340-2351
Molecular insights into titin's A-band. Description: Fleming, Jennifer R, et al. Molecular insights into titin's A-band. ''J Muscle Res Cell Motil''. 2023 Dec; '''44''' (4):255-270
Patchwork: Alignment-Based Retrieval and Concatenation of Phylogenetic Markers from Genomic Data. Description: Thalen, Felix, et al. Patchwork: Alignment-Based Retrieval and Concatenation of Phylogenetic Markers from Genomic Data. ''Genome Biol Evol''. 2023 Dec 1; '''15''' (12):
PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models. Description: Poretsky, Elly, et al. PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models. ''Plant Direct''. 2023 Dec; '''7''' (12):e554
Reversible aberrancies in gut microbiome of moderate and late preterm infants: results from a randomized, controlled trial. Description: Luoto, Raakel, et al. Reversible aberrancies in gut microbiome of moderate and late preterm infants: results from a randomized, controlled trial. ''Gut Microbes''. 2023 Dec; '''15''' (2):2283913
Single-cell transcriptomics reveals the brain evolution of web-building spiders. Description: Jin, Pengyu, et al. Single-cell transcriptomics reveals the brain evolution of web-building spiders. ''Nat Ecol Evol''. 2023 Dec; '''7''' (12):2125-2142
The assessment on cross immunity with smallpox virus and antiviral drug sensitivity of the isolated mpox virus strain WIBP-MPXV-001 in China. Description: Zeng, Yan, et al. The assessment on cross immunity with smallpox virus and antiviral drug sensitivity of the isolated mpox virus strain WIBP-MPXV-001 in China. ''Emerg Microbes Infect''. 2023 Dec; '''12''' (1):2208682
The diversity and ecological significance of microbial traits potentially involved in B(12) biosynthesis in the global ocean. Description: Zhou, Jiayin, et al. The diversity and ecological significance of microbial traits potentially involved in B(12) biosynthesis in the global ocean. ''mLife''. 2023 Dec; '''2''' (4):416-427
The gut microbiome and metabolome in kidney transplant recipients with normal and moderately decreased kidney function. Description: Lan, Yang, et al. The gut microbiome and metabolome in kidney transplant recipients with normal and moderately decreased kidney function. ''Ren Fail''. 2023 Dec; '''45''' (1):2228419
The highly improved genome of Ixodes scapularis with X and Y pseudochromosomes. Description: The highly improved genome of Ixodes scapularis with X and Y pseudochromosomes. ''''. 2023 Dec; '''6''' (12):
Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants. Description: Palande, Sourabh, et al. Topological data analysis reveals a core gene expression backbone that defines form and function across flowering plants. ''PLoS Biol''. 2023 Dec; '''21''' (12):e3002397
Transcriptomic analysis reveals candidate genes associated with salinity stress tolerance during the early vegetative stage in fababean genotype, Hassawi-2. Description: Afzal, Muhammad, et al. Transcriptomic analysis reveals candidate genes associated with salinity stress tolerance during the early vegetative stage in fababean genotype, Hassawi-2. ''Sci Rep''. 2023 Dec 1; '''13''' (1):21223
The genomes of Scedosporium between environmental challenges and opportunism. Description: Venice, Francesco, et al. The genomes of Scedosporium between environmental challenges and opportunism. ''IMA Fungus''. 2023 Dec 4; '''14''' (1):25
A large-scale genomically predicted protein mass database enables rapid and broad-spectrum identification of bacterial and archaeal isolates by mass spectrometry. Description: Sekiguchi, Yuji, et al. A large-scale genomically predicted protein mass database enables rapid and broad-spectrum identification of bacterial and archaeal isolates by mass spectrometry. ''Genome Biol''. 2023 Dec 5; '''24''' (1):257
Imaging tumor lactate is feasible for identifying intermediate-risk prostate cancer patients with postsurgical biochemical recurrence. Description: Sushentsev, Nikita, et al. Imaging tumor lactate is feasible for identifying intermediate-risk prostate cancer patients with postsurgical biochemical recurrence. ''Proc Natl Acad Sci U S A''. 2023 Dec 5; '''120''' (49):e2312261120
Microbiota configuration determines nutritional immune optimization. Description: Han, Seong-Ji, et al. Microbiota configuration determines nutritional immune optimization. ''Proc Natl Acad Sci U S A''. 2023 Dec 5; '''120''' (49):e2304905120
Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness. Description: Costa, Lilian S Abreu Soares, et al. Repeated exposure of wheat to the fungal root pathogen Bipolaris sorokiniana modulates rhizosphere microbiome assembly and disease suppressiveness. ''Environ Microbiome''. 2023 Dec 5; '''18''' (1):85
Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem. Description: Deng, Wenchao, et al. Strategies of chemolithoautotrophs adapting to high temperature and extremely acidic conditions in a shallow hydrothermal ecosystem. ''Microbiome''. 2023 Dec 5; '''11''' (1):270
A reference genome for the long-term kleptoplast-retaining sea slug Elysia crispata morphotype clarki. Description: Eastman, Katharine E, et al. A reference genome for the long-term kleptoplast-retaining sea slug Elysia crispata morphotype clarki. ''G3 (Bethesda)''. 2023 Dec 6; '''13''' (12):
Comparative transcriptomics reveals divergence in pathogen response gene families amongst 20 forest tree species. Description: Lu, Mengmeng, et al. Comparative transcriptomics reveals divergence in pathogen response gene families amongst 20 forest tree species. ''G3 (Bethesda)''. 2023 Dec 6; '''13''' (12):
The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution. Description: Collins, Gemma, et al. The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution. ''Commun Biol''. 2023 Dec 8; '''6''' (1):1241
Pathogen Eradication in Garlic in the Phytobiome Context: Should We Aim for Complete Cleaning? Description: Yarmus, Itay, et al. Pathogen Eradication in Garlic in the Phytobiome Context: Should We Aim for Complete Cleaning? ''Plants (Basel)''. 2023 Dec 10; '''12''' (24):
Sequencing and Analysis of the Mitochondrial Genome of Aedes aegypti (Diptera: Culicidae) from the Brazilian Amazon Region. Description: Sousa, Andrelina Alves de, et al. Sequencing and Analysis of the Mitochondrial Genome of Aedes aegypti (Diptera: Culicidae) from the Brazilian Amazon Region. ''Insects''. 2023 Dec 11; '''14''' (12):
Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae. Description: Santos-Pascual, Rodrigo, et al. Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0029023
Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. Description: Zhao, Peng, et al. Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0084023
Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus. Description: Morreale, Daniel P, et al. Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0312323
Resolving the phylogeny of Thladiantha (Cucurbitaceae) with three different target capture pipelines. Description: Raza, Mustafa, et al. Resolving the phylogeny of Thladiantha (Cucurbitaceae) with three different target capture pipelines. ''BMC Ecol Evol''. 2023 Dec 12; '''23''' (1):75
Rice bacterial leaf blight drives rhizosphere microbial assembly and function adaptation. Description: Jiang, Hubiao, et al. Rice bacterial leaf blight drives rhizosphere microbial assembly and function adaptation. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0105923
RNA virus diversity in three parasitoid wasps of tephritid flies: insights from novel and known species. Description: Zhang, Wei, et al. RNA virus diversity in three parasitoid wasps of tephritid flies: insights from novel and known species. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0313923
The genomic and epidemiological investigations of enteric viruses of domestic caprine (Capra hircus) revealed the presence of multiple novel viruses related to known strains of humans and ruminant livestock species. Description: Boros, Akos, et al. The genomic and epidemiological investigations of enteric viruses of domestic caprine (Capra hircus) revealed the presence of multiple novel viruses related to known strains of humans and ruminant livestock species. ''Microbiol Spectr''. 2023 Dec 12; '''11''' (6):e0253323
Phylogeography of Two Enigmatic Sulphur Butterflies, Colias mongola Alpheraky, 1897 and Colias tamerlana Staudinger, 1897 (Lepidoptera, Pieridae), with Relations to Wolbachia Infection. Description: Shapoval, Nazar A, et al. Phylogeography of Two Enigmatic Sulphur Butterflies, Colias mongola Alpheraky, 1897 and Colias tamerlana Staudinger, 1897 (Lepidoptera, Pieridae), with Relations to Wolbachia Infection. ''Insects''. 2023 Dec 13; '''14''' (12):
Ceratobasidium sp. is associated with cassava witches' broom disease, a re-emerging threat to cassava cultivation in Southeast Asia. Description: Leiva, Ana M, et al. Ceratobasidium sp. is associated with cassava witches' broom disease, a re-emerging threat to cassava cultivation in Southeast Asia. ''Sci Rep''. 2023 Dec 15; '''13''' (1):22500
Chromosome-level genome assembly of the Stoliczka's Asian trident bat (Aselliscus stoliczkanus). Description: Lan, Linjing, et al. Chromosome-level genome assembly of the Stoliczka's Asian trident bat (Aselliscus stoliczkanus). ''Sci Data''. 2023 Dec 15; '''10''' (1):902
Exploring the Diversity of Plant-Associated Viruses and Related Viruses in Riverine Freshwater Samples Collected in Berlin, Germany. Description: Zell, Roland, et al. Exploring the Diversity of Plant-Associated Viruses and Related Viruses in Riverine Freshwater Samples Collected in Berlin, Germany. ''Pathogens''. 2023 Dec 15; '''12''' (12):
Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata). Description: Liu, Detuan, et al. Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata). ''Sci Data''. 2023 Dec 15; '''10''' (1):901
Integrated metabolome and transcriptome analyses of anthocyanin biosynthesis reveal key candidate genes involved in colour variation of Scutellaria baicalensis flowers. Description: Guo, Fengdan, et al. Integrated metabolome and transcriptome analyses of anthocyanin biosynthesis reveal key candidate genes involved in colour variation of Scutellaria baicalensis flowers. ''BMC Plant Biol''. 2023 Dec 15; '''23''' (1):643
Simulated spaceflight-induced cardiac remodeling is modulated by gut microbial-derived trimethylamine N-oxide. Description: Liu, Zizhong, et al. Simulated spaceflight-induced cardiac remodeling is modulated by gut microbial-derived trimethylamine N-oxide. ''iScience''. 2023 Dec 15; '''26''' (12):108556
The Natural Products Discovery Center: Release of the First 8490 Sequenced Strains for Exploring Actinobacteria Biosynthetic Diversity. Description: Kalkreuter, Edward, et al. The Natural Products Discovery Center: Release of the First 8490 Sequenced Strains for Exploring Actinobacteria Biosynthetic Diversity. ''bioRxiv''. 2023 Dec 15;
The Viromes of Six Ecosystem Service Provider Parasitoid Wasps. Description: Caldas-Garcia, Gabriela B, et al. The Viromes of Six Ecosystem Service Provider Parasitoid Wasps. ''Viruses''. 2023 Dec 16; '''15''' (12):
Strain-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. Description: Minot, Samuel S, et al. Strain-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. ''medRxiv''. 2023 Dec 17;
Evolution and ecology of Jeilongvirus among wild rodents and shrews in Singapore. Description: Ch'ng, Lena, et al. Evolution and ecology of Jeilongvirus among wild rodents and shrews in Singapore. ''One Health Outlook''. 2023 Dec 18; '''5''' (1):19
Compositional and functional changes in the salivary microbiota related to oral leukoplakia and oral squamous cell carcinoma: a case control study. Description: Lan, Qingying, et al. Compositional and functional changes in the salivary microbiota related to oral leukoplakia and oral squamous cell carcinoma: a case control study. ''BMC Oral Health''. 2023 Dec 19; '''23''' (1):1021
Identification of Incomplete Annotations of Biosynthesis Pathways in Rhodophytes Using a Multi-Omics Approach. Description: McKinnie, Lachlan J, et al. Identification of Incomplete Annotations of Biosynthesis Pathways in Rhodophytes Using a Multi-Omics Approach. ''Mar Drugs''. 2023 Dec 19; '''22''' (1):
Gut microbiota affects the estrus return of sows by regulating the metabolism of sex steroid hormones. Description: Liu, Min, et al. Gut microbiota affects the estrus return of sows by regulating the metabolism of sex steroid hormones. ''J Anim Sci Biotechnol''. 2023 Dec 20; '''14''' (1):155
Defining microbial community functions in chronic human infection with metatranscriptomics. Description: Adekoya, Aanuoluwa E, et al. Defining microbial community functions in chronic human infection with metatranscriptomics. ''mSystems''. 2023 Dec 21; '''8''' (6):e0059323
Landscape of gut microbiota and metabolites and their interaction in comorbid heart failure and depressive symptoms: a random forest analysis study. Description: Huang, Kai, et al. Landscape of gut microbiota and metabolites and their interaction in comorbid heart failure and depressive symptoms: a random forest analysis study. ''mSystems''. 2023 Dec 21; '''8''' (6):e0051523
MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes. Description: Groussman, R D, et al. MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes. ''Sci Data''. 2023 Dec 21; '''10''' (1):926
Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon. Description: Silva, Sandra Godinho, et al. Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon. ''mSystems''. 2023 Dec 21; '''8''' (6):e0064323
Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59. Description: Molina-Pardines, Carmen, et al. Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59. ''mSystems''. 2023 Dec 21; '''8''' (6):e0089823
Pegivirus Detection in Cerebrospinal Fluid from Patients with Central Nervous System Infections of Unknown Etiology in Brazil by Viral Metagenomics. Description: Carmona, Rita de Cassia Compagnoli, et al. Pegivirus Detection in Cerebrospinal Fluid from Patients with Central Nervous System Infections of Unknown Etiology in Brazil by Viral Metagenomics. ''Microorganisms''. 2023 Dec 22; '''12''' (1):
Prediction and characterization of prophages of Stenotrophomonas maltophilia reveals a remarkable phylogenetic diversity of prophages. Description: Fang, Zheng, et al. Prediction and characterization of prophages of Stenotrophomonas maltophilia reveals a remarkable phylogenetic diversity of prophages. ''Sci Rep''. 2023 Dec 22; '''13''' (1):22941
Interspecies Papillomavirus Type Infection and a Novel Papillomavirus Type in Red Ruffed Lemurs (Varecia rubra). Description: Paietta, Elise N, et al. Interspecies Papillomavirus Type Infection and a Novel Papillomavirus Type in Red Ruffed Lemurs (Varecia rubra). ''Viruses''. 2023 Dec 25; '''16''' (1):
A transcriptional program underlying the circannual rhythms of gonadal development in medaka. Description: Nakayama, Tomoya, et al. A transcriptional program underlying the circannual rhythms of gonadal development in medaka. ''Proc Natl Acad Sci U S A''. 2023 Dec 26; '''120''' (52):e2313514120
Comparative Rumen Metagenome and CAZyme Profiles in Cattle and Buffaloes: Implications for Methane Yield and Rumen Fermentation on a Common Diet. Description: Malik, Pradeep K, et al. Comparative Rumen Metagenome and CAZyme Profiles in Cattle and Buffaloes: Implications for Methane Yield and Rumen Fermentation on a Common Diet. ''Microorganisms''. 2023 Dec 27; '''12''' (1):
The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations. Description: Cui, Hongzhu, et al. The Extent of Edgetic Perturbations in the Human Interactome Caused by Population-Specific Mutations. ''Biomolecules''. 2023 Dec 27; '''14''' (1):
Thermally Stable Terbium(II) and Dysprosium(II) Bis-amidinate Complexes. Description: Jin, Peng-Bo, et al. Thermally Stable Terbium(II) and Dysprosium(II) Bis-amidinate Complexes. ''J Am Chem Soc''. 2023 Dec 27; '''145''' (51):27993-28009
Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae). Description: Dial, Dustin T, et al. Whole-genome sequence of the Cooley spruce gall adelgid, Adelges cooleyi (Hemiptera: Sternorrhyncha: Adelgidae). ''G3 (Bethesda)''. 2023 Dec 29; '''14''' (1):
First Contiguous Genome Assembly of Japanese Lady Bell (Adenophora triphylla) and Insights into Development of Different Leaf Types. Description: Kang, Ji-Nam, et al. First Contiguous Genome Assembly of Japanese Lady Bell (Adenophora triphylla) and Insights into Development of Different Leaf Types. ''Genes (Basel)''. 2023 Dec 30; '''15''' (1):
Faecal Microbiota transplantation affects liver DNA methylation in Non-alcoholic fatty liver disease: a multi-omics approach. Description: Stols-Goncalves, Daniela, et al. Faecal Microbiota transplantation affects liver DNA methylation in Non-alcoholic fatty liver disease: a multi-omics approach. ''Gut Microbes''. 2023 Dec 31; '''15''' (1):2223330
Active microbiota persist in dry permafrost and active layer from Elephant Head, Antarctica. Description: Wood, Claudia, et al. Active microbiota persist in dry permafrost and active layer from Elephant Head, Antarctica. ''ISME Commun''. 2024 Jan; '''4''' (1):ycad002
Air monitoring by nanopore sequencing. Description: Reska, Tim, et al. Air monitoring by nanopore sequencing. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae099
Allergen-specific sublingual immunotherapy altered gut microbiota in patients with allergic rhinitis. Description: Wu, Jing, et al. Allergen-specific sublingual immunotherapy altered gut microbiota in patients with allergic rhinitis. ''Front Cell Infect Microbiol''. 2024; '''14''': 1454333
A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass. Description: Pereira-Marques, Joana, et al. A metatranscriptomics strategy for efficient characterization of the microbiome in human tissues with low microbial biomass. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2323235
AmiR-P3: An AI-based microRNA prediction pipeline in plants. Description: Ataei, Sobhan, et al. AmiR-P3: An AI-based microRNA prediction pipeline in plants. ''PLoS One''. 2024; '''19''' (8):e0308016
A mysterious cloak: the peptidoglycan layer of algal and plant plastids. Description: MacLeod, Alexander I, et al. A mysterious cloak: the peptidoglycan layer of algal and plant plastids. ''Protoplasma''. 2024 Jan; '''261''' (1):173-178
Analysis of novel bacterial metagenome-assembled genomes from lignin-degrading microbial consortia. Description: Balestrini, Vitoria Pinheiro, et al. Analysis of novel bacterial metagenome-assembled genomes from lignin-degrading microbial consortia. ''Curr Res Microb Sci''. 2024; '''7''': 100302
An environmental isolate of Pseudomonas, 20EI1, reduces Aspergillus flavus growth in an iron-dependent manner and alters secondary metabolism. Description: Wyman, Elizabeth M, et al. An environmental isolate of Pseudomonas, 20EI1, reduces Aspergillus flavus growth in an iron-dependent manner and alters secondary metabolism. ''Front Microbiol''. 2024; '''15''': 1514950
An insight into the vaginal microbiome of infertile women in Bangladesh using metagenomic approach. Description: Hasan, Zahid, et al. An insight into the vaginal microbiome of infertile women in Bangladesh using metagenomic approach. ''Front Cell Infect Microbiol''. 2024; '''14''': 1390088
Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes. Description: Robinson, David, et al. Antarctic lake viromes reveal potential virus associated influences on nutrient cycling in ice-covered lakes. ''Front Microbiol''. 2024; '''15''': 1422941
APH(3')-Ie, an aminoglycoside-modifying enzyme discovered in a rabbit-derived Citrobacter gillenii isolate. Description: Lin, Naru, et al. APH(3')-Ie, an aminoglycoside-modifying enzyme discovered in a rabbit-derived Citrobacter gillenii isolate. ''Front Cell Infect Microbiol''. 2024; '''14''': 1435123
A PLA2 deletion mutant using CRISPR/Cas9 coupled to RNASeq reveals insect immune genes associated with eicosanoid signaling. Description: Vatanparast, Mohammad, et al. A PLA2 deletion mutant using CRISPR/Cas9 coupled to RNASeq reveals insect immune genes associated with eicosanoid signaling. ''PLoS One''. 2024; '''19''' (7):e0304958
A targeted approach to enrich host-associated bacteria for metagenomic sequencing. Description: Dungan, Ashley M, et al. A targeted approach to enrich host-associated bacteria for metagenomic sequencing. ''FEMS Microbes''. 2024; '''5''': xtad021
Bacteroidia and Clostridia are equipped to degrade a cascade of polysaccharides along the hindgut of the herbivorous fish Kyphosus sydneyanus. Description: Facimoto, Cesar T, et al. Bacteroidia and Clostridia are equipped to degrade a cascade of polysaccharides along the hindgut of the herbivorous fish Kyphosus sydneyanus. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae102
Bridging integrator 1 fragment accelerates tau aggregation and propagation by enhancing clathrin-mediated endocytosis in mice. Description: Zhang, Xingyu, et al. Bridging integrator 1 fragment accelerates tau aggregation and propagation by enhancing clathrin-mediated endocytosis in mice. ''PLoS Biol''. 2024 Jan; '''22''' (1):e3002470
Characterization of a broad-spectrum antifungal strain, Streptomyces graminearus STR-1, against Magnaporthe oryzae. Description: Shen, Wenyuan, et al. Characterization of a broad-spectrum antifungal strain, Streptomyces graminearus STR-1, against Magnaporthe oryzae. ''Front Microbiol''. 2024; '''15''': 1298781
Characterization of rhizosphere bacterial communities in oilseed rape cultivars with different susceptibility to Plasmodiophora brassicae infection. Description: Deng, Yue, et al. Characterization of rhizosphere bacterial communities in oilseed rape cultivars with different susceptibility to Plasmodiophora brassicae infection. ''Front Plant Sci''. 2024; '''15''': 1496770
Characterizing the gut microbiome of diarrheal mink under farmed conditions: A metagenomic analysis. Description: Liu, Shuo, et al. Characterizing the gut microbiome of diarrheal mink under farmed conditions: A metagenomic analysis. ''PLoS One''. 2024; '''19''' (10):e0312821
Chromosome-level assembly of the Clinopodium gracile genome. Description: Gao, Yubang. Chromosome-level assembly of the Clinopodium gracile genome. ''Front Plant Sci''. 2024; '''15''': 1489102
Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated. Description: Kobayashi, Yasufumi, et al. Chromosome-level genome assemblies for two quinoa inbred lines from northern and southern highlands of Altiplano where quinoa originated. ''Front Plant Sci''. 2024; '''15''': 1434388
Chromosome-scale genome assembly of Codonopsis pilosula and comparative genomic analyses shed light on its genome evolution. Description: Chen, Bao-Zheng, et al. Chromosome-scale genome assembly of Codonopsis pilosula and comparative genomic analyses shed light on its genome evolution. ''Front Plant Sci''. 2024; '''15''': 1469375
Claroideglomus etunicatum enhances Pteris vittata L. arsenic resistance and accumulation by mediating the rapid reduction and transport of arsenic in roots. Description: Pan, Guofei, et al. Claroideglomus etunicatum enhances Pteris vittata L. arsenic resistance and accumulation by mediating the rapid reduction and transport of arsenic in roots. ''Front Plant Sci''. 2024; '''15''': 1464547
Comparative genomics between Trichomonas tenax and Trichomonas vaginalis: CAZymes and candidate virulence factors. Description: Mpeyako, Lenshina A, et al. Comparative genomics between Trichomonas tenax and Trichomonas vaginalis: CAZymes and candidate virulence factors. ''Front Microbiol''. 2024; '''15''': 1437572
Comparative metagenomic analysis of microbial community compositions and functions in cage aquaculture and its nearby non-aquaculture environments. Description: Liu, Zetian, et al. Comparative metagenomic analysis of microbial community compositions and functions in cage aquaculture and its nearby non-aquaculture environments. ''Front Microbiol''. 2024; '''15''': 1398005
Comparative metagenomics of microbial communities and resistome in southern farming systems: implications for antimicrobial stewardship and public health. Description: Kilonzo-Nthenge, Agnes, et al. Comparative metagenomics of microbial communities and resistome in southern farming systems: implications for antimicrobial stewardship and public health. ''Front Microbiol''. 2024; '''15''': 1443292
Comparative transcriptome and metabolome analysis revealed diversity in the response of resistant and susceptible rose (Rosa hybrida) varieties to Marssonina rosae. Description: Song, Jurong, et al. Comparative transcriptome and metabolome analysis revealed diversity in the response of resistant and susceptible rose (Rosa hybrida) varieties to Marssonina rosae. ''Front Plant Sci''. 2024; '''15''': 1362287
Comprehensive genome sequence analysis of Ralstonia solanacearum gd-2, a phylotype I sequevar 15 strain collected from a tobacco bacterial phytopathogen. Description: Xiao, Zhiliang, et al. Comprehensive genome sequence analysis of Ralstonia solanacearum gd-2, a phylotype I sequevar 15 strain collected from a tobacco bacterial phytopathogen. ''Front Microbiol''. 2024; '''15''': 1335081
Cross-protection induced by highly conserved human B, CD4(+), and CD8(+) T-cell epitopes-based vaccine against severe infection, disease, and death caused by multiple SARS-CoV-2 variants of concern. Description: Prakash, Swayam, et al. Cross-protection induced by highly conserved human B, CD4(+), and CD8(+) T-cell epitopes-based vaccine against severe infection, disease, and death caused by multiple SARS-CoV-2 variants of concern. ''Front Immunol''. 2024; '''15''': 1328905
De novo transcriptome assembly and genome annotation of the fat-tailed dunnart (Sminthopsis crassicaudata). Description: Ibeh, Neke, et al. De novo transcriptome assembly and genome annotation of the fat-tailed dunnart (Sminthopsis crassicaudata). ''GigaByte''. 2024; '''2024''': gigabyte118
Development of SSR markers for genetic diversity analysis and species identification in Polygonatum odoratum (Mill.) Druce based on transcriptome sequences. Description: Pan, Gen, et al. Development of SSR markers for genetic diversity analysis and species identification in Polygonatum odoratum (Mill.) Druce based on transcriptome sequences. ''PLoS One''. 2024; '''19''' (9):e0308316
Dickeya fangzhongdai was prevalent and caused taro soft rot when coexisting with the Pectobacterium complex, with a preference for Araceae plants. Description: Zhang, Jingxin, et al. Dickeya fangzhongdai was prevalent and caused taro soft rot when coexisting with the Pectobacterium complex, with a preference for Araceae plants. ''Front Microbiol''. 2024; '''15''': 1431047
Differential effects of domesticated and wild Capsicum frutescens L. on microbial community assembly and metabolic functions in rhizosphere soil. Description: Wang, Can, et al. Differential effects of domesticated and wild Capsicum frutescens L. on microbial community assembly and metabolic functions in rhizosphere soil. ''Front Microbiol''. 2024; '''15''': 1383526
Disentangle beneficial effects of strain engraftment after fecal microbiota transplantation in subjects with MetSyn. Description: van der Vossen, Eduard W J, et al. Disentangle beneficial effects of strain engraftment after fecal microbiota transplantation in subjects with MetSyn. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2388295
Dynamic analysis of growth characteristics, secondary metabolites accumulation, and an in-depth understanding of anthraquinones biosynthesis in Rubia cordifolia Linn. Description: Lian, Conglong, et al. Dynamic analysis of growth characteristics, secondary metabolites accumulation, and an in-depth understanding of anthraquinones biosynthesis in Rubia cordifolia Linn. ''Front Plant Sci''. 2024; '''15''': 1504863
Effect of intestinal microbiota transplantation on chronic hepatitis B virus infection associated liver disease. Description: Deng, Lisi, et al. Effect of intestinal microbiota transplantation on chronic hepatitis B virus infection associated liver disease. ''Front Microbiol''. 2024; '''15''': 1458754
Effect of vegetable oil on ovarian steroidogenesis- A transcriptome approach to understand molecular mechanisms of hypothalamus pituitary and gonad axis (HPG) in Ompok bimaculatus. Description: Mandal, Sagar Chandra, et al. Effect of vegetable oil on ovarian steroidogenesis- A transcriptome approach to understand molecular mechanisms of hypothalamus pituitary and gonad axis (HPG) in Ompok bimaculatus. ''PLoS One''. 2024; '''19''' (12):e0309311
Effects of concentrate feeding sequence on VFA production, and cecal microbiota of Dezhou donkeys by metagenomic technology. Description: Cai, Changyun, et al. Effects of concentrate feeding sequence on VFA production, and cecal microbiota of Dezhou donkeys by metagenomic technology. ''Front Vet Sci''. 2024; '''11''': 1401980
Effects of elicitors from culture filtrate of Fusarium solani CL105 on flavonoid production of Scutellaria baicalensis calli. Description: Cui, Xiaoxuan, et al. Effects of elicitors from culture filtrate of Fusarium solani CL105 on flavonoid production of Scutellaria baicalensis calli. ''Front Plant Sci''. 2024; '''15''': 1383918
Effects of Glucagon-Like Peptide-1 Receptor Agonists on Gut Microbiota in Dehydroepiandrosterone-Induced Polycystic Ovary Syndrome Mice: Compared Evaluation of Liraglutide and Semaglutide Intervention. Description: Xiong, Chuanhao, et al. Effects of Glucagon-Like Peptide-1 Receptor Agonists on Gut Microbiota in Dehydroepiandrosterone-Induced Polycystic Ovary Syndrome Mice: Compared Evaluation of Liraglutide and Semaglutide Intervention. ''Diabetes Metab Syndr Obes''. 2024; '''17''': 865-880
Effects of postbiotics on chronic diarrhea in young adults: a randomized, double-blind, placebo-controlled crossover trial assessing clinical symptoms, gut microbiota, and metabolite profiles. Description: Guo, Shuai, et al. Effects of postbiotics on chronic diarrhea in young adults: a randomized, double-blind, placebo-controlled crossover trial assessing clinical symptoms, gut microbiota, and metabolite profiles. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2395092
Effects of salt stress on plant and rhizosphere bacterial communities, interaction patterns, and functions. Description: Fu, Maoxing, et al. Effects of salt stress on plant and rhizosphere bacterial communities, interaction patterns, and functions. ''Front Plant Sci''. 2024; '''15''': 1516336
Enhanced immunity: the gut microbiota changes in high-altitude Tibetan pigs compared to Yorkshire pigs. Description: Liu, Chengming, et al. Enhanced immunity: the gut microbiota changes in high-altitude Tibetan pigs compared to Yorkshire pigs. ''Front Microbiol''. 2024; '''15''': 1469253
Enhanced pathogenicity and synergistic effects of co-infection with bovine viral diarrhea virus 1 and HoBi-like virus in cattle and guinea pigs. Description: Cui, Hongliang, et al. Enhanced pathogenicity and synergistic effects of co-infection with bovine viral diarrhea virus 1 and HoBi-like virus in cattle and guinea pigs. ''Front Vet Sci''. 2024; '''11''': 1464745
Enhancing transcriptome analysis in medicinal plants: multiple unigene sets in Astragalus membranaceus. Description: Kang, Ji-Nam, et al. Enhancing transcriptome analysis in medicinal plants: multiple unigene sets in Astragalus membranaceus. ''Front Plant Sci''. 2024; '''15''': 1301526
Enriched rhizospheric functional microbiome may enhance adaptability of Artemisia lavandulaefolia and Betula luminifera in antimony mining areas. Description: Xing, Wenli, et al. Enriched rhizospheric functional microbiome may enhance adaptability of Artemisia lavandulaefolia and Betula luminifera in antimony mining areas. ''Front Microbiol''. 2024; '''15''': 1348054
Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization. Description: Erb, Isabel K, et al. Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization. ''FEMS Microbes''. 2024; '''5''': xtae024
Evaluation of sequence-based tools to gather more insight into the positioning of rhizogenic agrobacteria within the Agrobacterium tumefaciens species complex. Description: Vargas Ribera, Pablo Roberto, et al. Evaluation of sequence-based tools to gather more insight into the positioning of rhizogenic agrobacteria within the Agrobacterium tumefaciens species complex. ''PLoS One''. 2024; '''19''' (11):e0302954
Exploring the allelopathic autotoxicity mechanism of ginsenosides accumulation under ginseng decomposition based on integrated analysis of transcriptomics and metabolomics. Description: Wang, Rui, et al. Exploring the allelopathic autotoxicity mechanism of ginsenosides accumulation under ginseng decomposition based on integrated analysis of transcriptomics and metabolomics. ''Front Bioeng Biotechnol''. 2024; '''12''': 1365229
Exploring the evolution of CHS gene family in plants. Description: Yang, Li, et al. Exploring the evolution of CHS gene family in plants. ''Front Genet''. 2024; '''15''': 1368358
FastProtein-an automated software for in silico proteomic analysis. Description: Moreira, Renato Simoes, et al. FastProtein-an automated software for in silico proteomic analysis. ''PeerJ''. 2024; '''12''': e18309
Fecal microbiota transplantation from postmenopausal osteoporosis human donors accelerated bone mass loss in mice. Description: Chen, Tinglong, et al. Fecal microbiota transplantation from postmenopausal osteoporosis human donors accelerated bone mass loss in mice. ''Front Cell Infect Microbiol''. 2024; '''14''': 1488017
Field application of de novo transcriptomic analysis to evaluate the effects of sublethal freshwater salinization on Gasterosteus aculeatus in urban streams. Description: Escobar-Sierra, Camilo, et al. Field application of de novo transcriptomic analysis to evaluate the effects of sublethal freshwater salinization on Gasterosteus aculeatus in urban streams. ''PLoS One''. 2024; '''19''' (3):e0298213
Formation of Biogenic Manganese Oxide Nodules on Hyphae of a New Fungal Isolate of Periconia That Immobilizes Aqueous Copper. Description: Tsushima, Shihori, et al. Formation of Biogenic Manganese Oxide Nodules on Hyphae of a New Fungal Isolate of Periconia That Immobilizes Aqueous Copper. ''Microbes Environ''. 2024; '''39''' (2):
Functional analysis of microorganisms and metabolites in the cecum of different sheep populations and their effects on production traits. Description: Meng, Quanlu, et al. Functional analysis of microorganisms and metabolites in the cecum of different sheep populations and their effects on production traits. ''Front Microbiol''. 2024; '''15''': 1437250
Genome analysis of Bifidobacterium adolescentis and investigation of its effects on inflammation and intestinal barrier function. Description: Li, Bo, et al. Genome analysis of Bifidobacterium adolescentis and investigation of its effects on inflammation and intestinal barrier function. ''Front Microbiol''. 2024; '''15''': 1496280
Genome sequencing and CAZymes repertoire analysis of Diaporthe eres P3-1W causing postharvest fruit rot of 'Hongyang' kiwifruit in China. Description: Ling, Li-Zhen, et al. Genome sequencing and CAZymes repertoire analysis of Diaporthe eres P3-1W causing postharvest fruit rot of 'Hongyang' kiwifruit in China. ''PeerJ''. 2024; '''12''': e17715
Genomic and ecological approaches to identify the Bifidobacterium breve prototype of the healthy human gut microbiota. Description: Argentini, Chiara, et al. Genomic and ecological approaches to identify the Bifidobacterium breve prototype of the healthy human gut microbiota. ''Front Microbiol''. 2024; '''15''': 1349391
Genomic and functional diversity of the human-derived isolates of Faecalibacterium. Description: Li, Wenxi, et al. Genomic and functional diversity of the human-derived isolates of Faecalibacterium. ''Front Microbiol''. 2024; '''15''': 1379500
Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean. Description: Rey-Velasco, Xavier, et al. Genomic and phenotypic characterization of 26 novel marine bacterial strains with relevant biogeochemical roles and widespread presence across the global ocean. ''Front Microbiol''. 2024; '''15''': 1407904
Genomic characterisation and ecological distribution of Mantoniella tinhauana: a novel Mamiellophycean green alga from the Western Pacific. Description: Rey Redondo, Elvira, et al. Genomic characterisation and ecological distribution of Mantoniella tinhauana: a novel Mamiellophycean green alga from the Western Pacific. ''Front Microbiol''. 2024; '''15''': 1358574
Genomic insights into Dactylosporangium sp. AC04546, a rubber degrader with three latex clearing proteins. Description: Basik, Ann Anni, et al. Genomic insights into Dactylosporangium sp. AC04546, a rubber degrader with three latex clearing proteins. ''Front Microbiol''. 2024; '''15''': 1378082
Gonadal transcriptome sequencing reveals sexual dimorphism in expression profiling of sex-related genes in Asian arowana (Scleropages formosus). Description: Zhao, Chenxi, et al. Gonadal transcriptome sequencing reveals sexual dimorphism in expression profiling of sex-related genes in Asian arowana (Scleropages formosus). ''Front Genet''. 2024; '''15''': 1381832
Graphene promotes the growth of Vigna angularis by regulating the nitrogen metabolism and photosynthesis. Description: Qiao, Jun, et al. Graphene promotes the growth of Vigna angularis by regulating the nitrogen metabolism and photosynthesis. ''PLoS One''. 2024; '''19''' (3):e0297892
Gut microbiota and metabolic profiles in adults with unclassified diabetes: a cross-sectional study. Description: Zhang, Juan, et al. Gut microbiota and metabolic profiles in adults with unclassified diabetes: a cross-sectional study. ''Front Endocrinol (Lausanne)''. 2024; '''15''': 1440984
Gut microbiota depletion delays somatic peripheral nerve development and impairs neuromuscular junction maturation. Description: Cescon, Matilde, et al. Gut microbiota depletion delays somatic peripheral nerve development and impairs neuromuscular junction maturation. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2363015
Gut microbiota-mediated C-sulfonate metabolism impairs the bioavailability and anti-cholestatic efficacy of andrographolide. Description: Tang, Dafu, et al. Gut microbiota-mediated C-sulfonate metabolism impairs the bioavailability and anti-cholestatic efficacy of andrographolide. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2387402
High concentrate diets altered the structure and function of rumen microbiome in goats. Description: Mao, Jinju, et al. High concentrate diets altered the structure and function of rumen microbiome in goats. ''Front Microbiol''. 2024; '''15''': 1416883
High Frankia abundance and low diversity of microbial community are associated with nodulation specificity and stability of sea buckthorn root nodule. Description: Liu, Hong, et al. High Frankia abundance and low diversity of microbial community are associated with nodulation specificity and stability of sea buckthorn root nodule. ''Front Plant Sci''. 2024; '''15''': 1301447
High-pressure high-temperature synthesis of NdRe(2). Description: Hussein, Zain, et al. High-pressure high-temperature synthesis of NdRe(2). ''Front Chem''. 2024; '''12''': 1259032
Horizontal gene transfer in plant microbiomes: integrons as hotspots for cross-species gene exchange. Description: Ghaly, Timothy M, et al. Horizontal gene transfer in plant microbiomes: integrons as hotspots for cross-species gene exchange. ''Front Microbiol''. 2024; '''15''': 1338026
Host influence on the eukaryotic virome of sympatric mosquitoes and abundance of diverse viruses with a broad host range. Description: Morel, Come, et al. Host influence on the eukaryotic virome of sympatric mosquitoes and abundance of diverse viruses with a broad host range. ''PLoS One''. 2024; '''19''' (4):e0300915
How do various strategies for returning residues change microbiota modulation: potential implications for soil health. Description: Jiang, Nan, et al. How do various strategies for returning residues change microbiota modulation: potential implications for soil health. ''Front Microbiol''. 2024; '''15''': 1495682
Identification and characterization of a novel chromosome-encoded aminoglycoside O-nucleotidyltransferase gene, ant(9)-Id, in Providencia sp. TYF-12 isolated from the marine fish intestine. Description: Yu, Yan, et al. Identification and characterization of a novel chromosome-encoded aminoglycoside O-nucleotidyltransferase gene, ant(9)-Id, in Providencia sp. TYF-12 isolated from the marine fish intestine. ''Front Microbiol''. 2024; '''15''': 1475172
Identification and classification of the genomes of novel microviruses in poultry slaughterhouse. Description: Xie, Keming, et al. Identification and classification of the genomes of novel microviruses in poultry slaughterhouse. ''Front Microbiol''. 2024; '''15''': 1393153
Identification and functional characterization of the RPP13 gene family in potato (Solanum tuberosum L.) for disease resistance. Description: Yuan, Baoqi, et al. Identification and functional characterization of the RPP13 gene family in potato (Solanum tuberosum L.) for disease resistance. ''Front Plant Sci''. 2024; '''15''': 1515060
Identification of a novel mycovirus belonging to the "flexivirus"-related family with icosahedral virion. Description: Wu, Chien-Fu, et al. Identification of a novel mycovirus belonging to the "flexivirus"-related family with icosahedral virion. ''Virus Evol''. 2024; '''10''' (1):veae093
Identification of complex III, NQR, and SDH as primary bioenergetic enzymes during the stationary phase of Pseudomonas aeruginosa cultured in urine-like conditions. Description: Hu, Yuyao, et al. Identification of complex III, NQR, and SDH as primary bioenergetic enzymes during the stationary phase of Pseudomonas aeruginosa cultured in urine-like conditions. ''Front Microbiol''. 2024; '''15''': 1347466
Identification of core genes involved in the response of Apocynum venetum to salt stress based on transcriptome sequencing and WGCNA. Description: Zhen, Xi, et al. Identification of core genes involved in the response of Apocynum venetum to salt stress based on transcriptome sequencing and WGCNA. ''PLoS One''. 2024; '''19''' (4):e0300277
Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae). Description: Grybchuk, Danyil, et al. Identification of diverse RNA viruses in Obscuromonas flagellates (Euglenozoa: Trypanosomatidae: Blastocrithidiinae). ''Virus Evol''. 2024; '''10''' (1):veae037
Impact of low-dose ozone nanobubble treatments on antimicrobial resistance genes in pond water. Description: Huang, Qianjun, et al. Impact of low-dose ozone nanobubble treatments on antimicrobial resistance genes in pond water. ''Front Microbiol''. 2024; '''15''': 1393266
Insight into endophytic microbial diversity in two halophytes and plant beneficial attributes of Bacillus swezeyi. Description: Gao, Lei, et al. Insight into endophytic microbial diversity in two halophytes and plant beneficial attributes of Bacillus swezeyi. ''Front Microbiol''. 2024; '''15''': 1447755
Insights into the molecular response of Dioithona rigida to selenium nanoparticles: de novo transcriptome assembly and differential gene expression analysis. Description: Meethalepurayil, Vineeth Kumar Chirayil, et al. Insights into the molecular response of Dioithona rigida to selenium nanoparticles: de novo transcriptome assembly and differential gene expression analysis. ''Sci Technol Adv Mater''. 2024; '''25''' (1):2379758
Integrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity. Description: Jiao, Bin, et al. Integrated analysis of gut metabolome, microbiome, and brain function reveal the role of gut-brain axis in longevity. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2331434
Integrated analysis of gut microbiome and its metabolites in ACE2-knockout and ACE2-overexpressed mice. Description: Song, Lini, et al. Integrated analysis of gut microbiome and its metabolites in ACE2-knockout and ACE2-overexpressed mice. ''Front Cell Infect Microbiol''. 2024; '''14''': 1404678
Integrated metagenomics and metabolomics analyses revealed biomarkers in beta-casein A2A2-type cows. Description: Zhao, Jinyan, et al. Integrated metagenomics and metabolomics analyses revealed biomarkers in beta-casein A2A2-type cows. ''Front Vet Sci''. 2024; '''11''': 1438717
Intramammary preparation of enrofloxacin hydrochloride-dihydrate for bovine mastitis (biofilm-forming Staphylococcus aureus). Description: Cordova-Gonzalez, Diana, et al. Intramammary preparation of enrofloxacin hydrochloride-dihydrate for bovine mastitis (biofilm-forming Staphylococcus aureus). ''J Vet Sci''. 2024 Jan; '''25''' (1):e6
Investigating the mechanism of rough phenotype in a naturally attenuated Brucella strain: insights from whole genome sequencing. Description: Han, Wendong, et al. Investigating the mechanism of rough phenotype in a naturally attenuated Brucella strain: insights from whole genome sequencing. ''Front Med (Lausanne)''. 2024; '''11''': 1363785
Isolation and characterization of a novel lytic Parabacteroides distasonis bacteriophage phiPDS1 from the human gut. Description: Cortes-Martin, Adrian, et al. Isolation and characterization of a novel lytic Parabacteroides distasonis bacteriophage phiPDS1 from the human gut. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2298254
Isolation, characterization, and genomic analysis of a lytic bacteriophage, PQ43W, with the potential of controlling bacterial wilt. Description: Huang, Binbin, et al. Isolation, characterization, and genomic analysis of a lytic bacteriophage, PQ43W, with the potential of controlling bacterial wilt. ''Front Microbiol''. 2024; '''15''': 1396213
Ji-Ni-De-Xie ameliorates type 2 diabetes mellitus by modulating the bile acids metabolism and FXR/FGF15 signaling pathway. Description: Tao, Yiwen, et al. Ji-Ni-De-Xie ameliorates type 2 diabetes mellitus by modulating the bile acids metabolism and FXR/FGF15 signaling pathway. ''Front Pharmacol''. 2024; '''15''': 1383896
LocoGSE, a sequence-based genome size estimator for plants. Description: Guenzi-Tiberi, Pierre, et al. LocoGSE, a sequence-based genome size estimator for plants. ''Front Plant Sci''. 2024; '''15''': 1328966
Magnesium oxide nanoparticles reduce clubroot by regulating plant defense response and rhizosphere microbial community of tumorous stem mustard (Brassica juncea var. tumida). Description: Liao, Jingjing, et al. Magnesium oxide nanoparticles reduce clubroot by regulating plant defense response and rhizosphere microbial community of tumorous stem mustard (Brassica juncea var. tumida). ''Front Microbiol''. 2024; '''15''': 1370427
Metabolic features that select for Bathyarchaeia in modern ferruginous lacustrine subsurface sediments. Description: Ruiz-Blas, Fatima, et al. Metabolic features that select for Bathyarchaeia in modern ferruginous lacustrine subsurface sediments. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae112
Metabolomic and metagenomic analyses elucidate the role of intercropping in mitigating continuous cropping challenges in tobacco. Description: Liu, Ming, et al. Metabolomic and metagenomic analyses elucidate the role of intercropping in mitigating continuous cropping challenges in tobacco. ''Front Plant Sci''. 2024; '''15''': 1447225
MetaCONNET: A metagenomic polishing tool for long-read assemblies. Description: Sun, Bingru, et al. MetaCONNET: A metagenomic polishing tool for long-read assemblies. ''PLoS One''. 2024; '''19''' (12):e0313515
Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children. Description: Han, Linli, et al. Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children. ''Front Immunol''. 2024; '''15''': 1416185
Metagenomic analysis of core differential microbes between traditional starter and Round-Koji-mechanical starter of Chi-flavor Baijiu. Description: Liang, Jinglong, et al. Metagenomic analysis of core differential microbes between traditional starter and Round-Koji-mechanical starter of Chi-flavor Baijiu. ''Front Microbiol''. 2024; '''15''': 1390899
Metagenomic and genomic analysis of heavy metal-tolerant and -resistant bacteria in resource islands in a semi-arid zone of the Colombian Caribbean. Description: Herrera-Calderon, Andrea Carolina, et al. Metagenomic and genomic analysis of heavy metal-tolerant and -resistant bacteria in resource islands in a semi-arid zone of the Colombian Caribbean. ''Environ Sci Pollut Res Int''. 2024 Jan; '''31''' (4):5596-5609
Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments. Description: Baumann, Kathrin B L, et al. Metagenomic and -transcriptomic analyses of microbial nitrogen transformation potential, and gene expression in Swiss lake sediments. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae110
Metagenomic comparison of gut communities between wild and captive Himalayan griffons. Description: Wang, You, et al. Metagenomic comparison of gut communities between wild and captive Himalayan griffons. ''Front Vet Sci''. 2024; '''11''': 1403932
Metagenomic sequencing identified microbial species in the rumen and cecum microbiome responsible for niacin treatment and related to intramuscular fat content in finishing cattle. Description: Yang, Zhuqing, et al. Metagenomic sequencing identified microbial species in the rumen and cecum microbiome responsible for niacin treatment and related to intramuscular fat content in finishing cattle. ''Front Microbiol''. 2024; '''15''': 1334068
Metagenomics profiling of the microbial community and functional differences in solid-state fermentation vinegar starter (seed Pei) from different Chinese regions. Description: Han, Dong, et al. Metagenomics profiling of the microbial community and functional differences in solid-state fermentation vinegar starter (seed Pei) from different Chinese regions. ''Front Microbiol''. 2024; '''15''': 1389737
MetaQuad: shared informative variants discovery in metagenomic samples. Description: Xu, Sheng, et al. MetaQuad: shared informative variants discovery in metagenomic samples. ''Bioinform Adv''. 2024; '''4''' (1):vbae030
Microbial Diversity in Children with Gastroenteritis in the Amazon Region of Brazil: Development and Validation of a Molecular Method for Complete Sequencing of Viral Genomes. Description: Hernandez, Juliana Merces, et al. Microbial Diversity in Children with Gastroenteritis in the Amazon Region of Brazil: Development and Validation of a Molecular Method for Complete Sequencing of Viral Genomes. ''J Genomics''. 2024; '''12''': 47-54
Microbial signatures in human periodontal disease: a metatranscriptome meta-analysis. Description: Ovsepian, Armen, et al. Microbial signatures in human periodontal disease: a metatranscriptome meta-analysis. ''Front Microbiol''. 2024; '''15''': 1383404
Modulation of metabolic and immunoregulatory pathways in the gut transcriptome of Atlantic salmon (Salmo salar L.) after early nutritional programming during first feeding with plant-based diet. Description: Tawfik, Marwa Mamdouh, et al. Modulation of metabolic and immunoregulatory pathways in the gut transcriptome of Atlantic salmon (Salmo salar L.) after early nutritional programming during first feeding with plant-based diet. ''Front Immunol''. 2024; '''15''': 1412821
Multi-omics analysis reveals interactions between host and microbes in Bama miniature pigs during weaning. Description: Ma, Wen, et al. Multi-omics analysis reveals interactions between host and microbes in Bama miniature pigs during weaning. ''Front Microbiol''. 2024; '''15''': 1482925
Multi-omics insights into the energy compensation of rumen microbiota of grazing yaks in cold season. Description: Bai, Jie, et al. Multi-omics insights into the energy compensation of rumen microbiota of grazing yaks in cold season. ''Front Microbiol''. 2024; '''15''': 1467841
New clades of viruses infecting the obligatory biotroph Bremia lactucae representing distinct evolutionary trajectory for viruses infecting oomycetes. Description: Forgia, Marco, et al. New clades of viruses infecting the obligatory biotroph Bremia lactucae representing distinct evolutionary trajectory for viruses infecting oomycetes. ''Virus Evol''. 2024; '''10''' (1):veae003
New mechanistic insights of anti-obesity by sleeve gastrectomy-altered gut microbiota and lipid metabolism. Description: Liu, Chuxuan, et al. New mechanistic insights of anti-obesity by sleeve gastrectomy-altered gut microbiota and lipid metabolism. ''Front Endocrinol (Lausanne)''. 2024; '''15''': 1338147
Novel cycloviruses identified by mining human blood metagenomic data show close relationship to those from animals. Description: Wang, Yuanqing, et al. Novel cycloviruses identified by mining human blood metagenomic data show close relationship to those from animals. ''Front Microbiol''. 2024; '''15''': 1522416
Paired metagenomic and chemical evaluation of aflatoxin-contaminated dog kibble. Description: Ottesen, Andrea, et al. Paired metagenomic and chemical evaluation of aflatoxin-contaminated dog kibble. ''Front Vet Sci''. 2024; '''11''': 1374839
Panax notoginseng stems and leaves affect microbial community and function in cecum of duzang pigs. Description: Yi, Lanlan, et al. Panax notoginseng stems and leaves affect microbial community and function in cecum of duzang pigs. ''Transl Anim Sci''. 2024; '''8''': txad142
Pathogen-specific alterations in intestinal microbiota precede urinary tract infections in preterm infants: a longitudinal case-control study. Description: Hong, Luyang, et al. Pathogen-specific alterations in intestinal microbiota precede urinary tract infections in preterm infants: a longitudinal case-control study. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2333413
Patiromer-Facilitated Renin-Angiotensin-Aldosterone System Inhibitor Utilization in Patients with Heart Failure with or without Comorbid Chronic Kidney Disease: Subgroup Analysis of DIAMOND Randomized Trial. Description: Weir, Matthew R, et al. Patiromer-Facilitated Renin-Angiotensin-Aldosterone System Inhibitor Utilization in Patients with Heart Failure with or without Comorbid Chronic Kidney Disease: Subgroup Analysis of DIAMOND Randomized Trial. ''Am J Nephrol''. 2024; '''55''' (6):672-689
pH selects for distinct N(2)O-reducing microbiomes in tropical soil microcosms. Description: Sun, Yanchen, et al. pH selects for distinct N(2)O-reducing microbiomes in tropical soil microcosms. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae070
Phylogenetic and phenotypic characterization of Burkholderia pseudomallei isolates from Ghana reveals a novel sequence type and common phenotypes. Description: Schully, Kevin L, et al. Phylogenetic and phenotypic characterization of Burkholderia pseudomallei isolates from Ghana reveals a novel sequence type and common phenotypes. ''Front Microbiol''. 2024; '''15''': 1401259
Plant growth-promoting rhizobacteria enhance active ingredient accumulation in medicinal plants at elevated CO(2) and are associated with indigenous microbiome. Description: Ng, Charles Wang Wai, et al. Plant growth-promoting rhizobacteria enhance active ingredient accumulation in medicinal plants at elevated CO(2) and are associated with indigenous microbiome. ''Front Microbiol''. 2024; '''15''': 1426893
Primary metabolomics and transcriptomic techniques were used to explore the regulatory mechanisms that may influence the flavor characteristics of fresh Corylus heterophylla x Corylus avellana. Description: Lu, Minmin, et al. Primary metabolomics and transcriptomic techniques were used to explore the regulatory mechanisms that may influence the flavor characteristics of fresh Corylus heterophylla x Corylus avellana. ''Front Plant Sci''. 2024; '''15''': 1475242
Proteomics analysis reveals differential acclimation of coastal and oceanic Synechococcus to climate warming and iron limitation. Description: Schiksnis, Cara, et al. Proteomics analysis reveals differential acclimation of coastal and oceanic Synechococcus to climate warming and iron limitation. ''Front Microbiol''. 2024; '''15''': 1323499
Proton pump inhibitors increase the risk of carbapenem-resistant Enterobacteriaceae colonization by facilitating the transfer of antibiotic resistance genes among bacteria in the gut microbiome. Description: Lee, Imchang, et al. Proton pump inhibitors increase the risk of carbapenem-resistant Enterobacteriaceae colonization by facilitating the transfer of antibiotic resistance genes among bacteria in the gut microbiome. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2341635
Regulatory microRNAs and phasiRNAs of paclitaxel biosynthesis in Taxus chinensis. Description: Sun, Ming-Sheng, et al. Regulatory microRNAs and phasiRNAs of paclitaxel biosynthesis in Taxus chinensis. ''Front Plant Sci''. 2024; '''15''': 1403060
Response analysis of Pinus sibirica to pine wood nematode infection through transcriptomics and metabolomics study. Description: Zhang, Jiawei, et al. Response analysis of Pinus sibirica to pine wood nematode infection through transcriptomics and metabolomics study. ''Front Plant Sci''. 2024; '''15''': 1383018
Seq2Phase: language model-based accurate prediction of client proteins in liquid-liquid phase separation. Description: Miyata, Kazuki, et al. Seq2Phase: language model-based accurate prediction of client proteins in liquid-liquid phase separation. ''Bioinform Adv''. 2024; '''4''' (1):vbad189
Short-chain fatty acids in breast milk and their relationship with the infant gut microbiota. Description: Xi, Menglu, et al. Short-chain fatty acids in breast milk and their relationship with the infant gut microbiota. ''Front Microbiol''. 2024; '''15''': 1356462
Single amino acid change in tomato brown rugose fruit virus breaks virus-specific resistance in new resistant tomato cultivar. Description: Zisi, Zafeiro, et al. Single amino acid change in tomato brown rugose fruit virus breaks virus-specific resistance in new resistant tomato cultivar. ''Front Plant Sci''. 2024; '''15''': 1382862
Single Phototrophic Bacterium-Mediated Iron Cycling in Aquatic Environments. Description: Wang, Kai-Li, et al. Single Phototrophic Bacterium-Mediated Iron Cycling in Aquatic Environments. ''Research (Wash D C)''. 2024; '''7''': 0528
Somatic genome architecture and molecular evolution are decoupled in "young" linage-specific gene families in ciliates. Description: Maurer-Alcala, Xyrus X, et al. Somatic genome architecture and molecular evolution are decoupled in "young" linage-specific gene families in ciliates. ''PLoS One''. 2024; '''19''' (1):e0291688
Specialized Bacteroidetes dominate the Arctic Ocean during marine spring blooms. Description: Redondo-Rio, Alvaro, et al. Specialized Bacteroidetes dominate the Arctic Ocean during marine spring blooms. ''Front Microbiol''. 2024; '''15''': 1481702
Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. Description: Minot, Samuel S, et al. Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2414975
Strain-level genomic analysis of serotype, genotype and virulence gene composition of group B streptococcus. Description: Zeng, Zhen, et al. Strain-level genomic analysis of serotype, genotype and virulence gene composition of group B streptococcus. ''Front Cell Infect Microbiol''. 2024; '''14''': 1396762
Study of red vine phenotypic plasticity across central-southern Italy sites: an integrated analysis of the transcriptome and weather indices through WGCNA. Description: Sicilia, Angelo, et al. Study of red vine phenotypic plasticity across central-southern Italy sites: an integrated analysis of the transcriptome and weather indices through WGCNA. ''Front Plant Sci''. 2024; '''15''': 1498649
Synbiotic regulates gut microbiota in patients with lupus nephritis: an analysis using metagenomic and metabolome sequencing. Description: Zhu, Qiuyu, et al. Synbiotic regulates gut microbiota in patients with lupus nephritis: an analysis using metagenomic and metabolome sequencing. ''Front Microbiol''. 2024; '''15''': 1295378
Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca. Description: Mira-Jover, Andrea, et al. Taking advantage of reference-guided assembly in a slowly-evolving lineage: Application to Testudo graeca. ''PLoS One''. 2024; '''19''' (8):e0303408
Taxonomic and functional shifts of gut microbiome in immunoglobulin A vasculitis children and their mothers. Description: Liang, Yijia, et al. Taxonomic and functional shifts of gut microbiome in immunoglobulin A vasculitis children and their mothers. ''Front Pediatr''. 2024; '''12''': 1356529
Taxonomic and genomic attributes of oligotrophic soil bacteria. Description: Dragone, Nicholas B, et al. Taxonomic and genomic attributes of oligotrophic soil bacteria. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae081
The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat. Description: Mahar, Jackie E, et al. The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat. ''Virus Evol''. 2024; '''10''' (1):veae044
The effects of different doses of compound enzyme preparations on the production performance, meat quality and rumen microorganisms of yak were studied by metagenomics and transcriptomics. Description: Zhang, Chenyang, et al. The effects of different doses of compound enzyme preparations on the production performance, meat quality and rumen microorganisms of yak were studied by metagenomics and transcriptomics. ''Front Microbiol''. 2024; '''15''': 1491551
The genome sequence of a braconid wasp, Aleiodes leptofemur van Achterberg & Shaw, 2016. Description: Broad, Gavin R. The genome sequence of a braconid wasp, Aleiodes leptofemur van Achterberg & Shaw, 2016. ''Wellcome Open Res''. 2024; '''9''': 460
The genome sequence of a braconid wasp, Aleiodes testaceus (Telenga, 1941). Description: Broad, Gavin R, et al. The genome sequence of a braconid wasp, Aleiodes testaceus (Telenga, 1941). ''Wellcome Open Res''. 2024; '''9''': 408
The genome sequence of a braconid wasp, Dinocampus coccinellae (Schrank, 1802). Description: Barclay, Maxwell V L, et al. The genome sequence of a braconid wasp, Dinocampus coccinellae (Schrank, 1802). ''Wellcome Open Res''. 2024; '''9''': 461
The genome sequence of a cased caddisfly, Mystacides longicornis (Linnaeus, 1758). Description: Coleman, Derek. The genome sequence of a cased caddisfly, Mystacides longicornis (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 310
The genome sequence of a cuckoo wasp, Hedychridium roseum (Rossi, 1790). Description: Boyes, Clare. The genome sequence of a cuckoo wasp, Hedychridium roseum (Rossi, 1790). ''Wellcome Open Res''. 2024; '''9''': 484
The genome sequence of a drosophilid fruit fly, Drosophila limbata von Roser 1840. Description: Obbard, Darren J. The genome sequence of a drosophilid fruit fly, Drosophila limbata von Roser 1840. ''Wellcome Open Res''. 2024; '''9''': 365
The genome sequence of a fungus weevil, Pseudeuparius sepicola (Fabricius, 1792). Description: Booth, Roger. The genome sequence of a fungus weevil, Pseudeuparius sepicola (Fabricius, 1792). ''Wellcome Open Res''. 2024; '''9''': 615
The genome sequence of a green lacewing, Nineta flava (Scopoli, 1763). Description: Broad, Gavin R, et al. The genome sequence of a green lacewing, Nineta flava (Scopoli, 1763). ''Wellcome Open Res''. 2024; '''9''': 477
The genome sequence of a ground beetle, Clivina fossor (Linnaeus, 1758). Description: Crowley, Liam M, et al. The genome sequence of a ground beetle, Clivina fossor (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 438
The genome sequence of a hydroid, Candelabrum cocksii (Cocks, 1854). Description: Adkins, Patrick, et al. The genome sequence of a hydroid, Candelabrum cocksii (Cocks, 1854). ''Wellcome Open Res''. 2024; '''9''': 393
The genome sequence of a jewel beetle, Agrilus biguttatus (Fabricius, 1776). Description: Garland, Steve. The genome sequence of a jewel beetle, Agrilus biguttatus (Fabricius, 1776). ''Wellcome Open Res''. 2024; '''9''': 413
The genome sequence of a leaf beetle, Galeruca laticollis Sahlberg, C.R., 1838. Description: Booth, Roger. The genome sequence of a leaf beetle, Galeruca laticollis Sahlberg, C.R., 1838. ''Wellcome Open Res''. 2024; '''9''': 594
The genome sequence of a lichen-forming fungus, Platismatia glauca Linnaeus, 1753. Description: Yahr, Rebecca. The genome sequence of a lichen-forming fungus, Platismatia glauca Linnaeus, 1753. ''Wellcome Open Res''. 2024; '''9''': 457
The genome sequence of an Entiminae weevil, Polydrusus pterygomalis Boheman, 1840. Description: Telfer, Mark G, et al. The genome sequence of an Entiminae weevil, Polydrusus pterygomalis Boheman, 1840. ''Wellcome Open Res''. 2024; '''9''': 528
The genome sequence of an ichneumonid wasp, Hyposoter dolosus (Gravenhorst, 1829). Description: Broad, Gavin R. The genome sequence of an ichneumonid wasp, Hyposoter dolosus (Gravenhorst, 1829). ''Wellcome Open Res''. 2024; '''9''': 499
The genome sequence of an ichneumonid wasp, Ophion ventricosus Gravenhorst, 1829. Description: Crowley, Liam M, et al. The genome sequence of an ichneumonid wasp, Ophion ventricosus Gravenhorst, 1829. ''Wellcome Open Res''. 2024; '''9''': 481
The genome sequence of an ichneumonid wasp, Pimpla contemplator (Muller, 1776). Description: Crowley, Liam M, et al. The genome sequence of an ichneumonid wasp, Pimpla contemplator (Muller, 1776). ''Wellcome Open Res''. 2024; '''9''': 647
The genome sequence of an ichneumonid wasp, Rhimphoctona ( Xylophylax) megacephalus (Gravenhorst, 1829). Description: Boparai, Jaswinder, et al. The genome sequence of an ichneumonid wasp, Rhimphoctona ( Xylophylax) megacephalus (Gravenhorst, 1829). ''Wellcome Open Res''. 2024; '''9''': 472
The genome sequence of a picture-winged fly, Melieria crassipennis (Fabricius, 1794). Description: Mitchell, Ryan. The genome sequence of a picture-winged fly, Melieria crassipennis (Fabricius, 1794). ''Wellcome Open Res''. 2024; '''9''': 614
The genome sequence of a sawfly Macrophya annulata (Geoffroy, 1785). Description: Crowley, Liam M, et al. The genome sequence of a sawfly Macrophya annulata (Geoffroy, 1785). ''Wellcome Open Res''. 2024; '''9''': 388
The genome sequence of a woodlouse fly, Melanophora roralis (Linnaeus, 1758). Description: Mitchell, Ryan, et al. The genome sequence of a woodlouse fly, Melanophora roralis (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 637
The genome sequence of Hoary Whitlowgrass, Draba incana L. Description: Ruhsam, Markus. The genome sequence of Hoary Whitlowgrass, Draba incana L. ''Wellcome Open Res''. 2024; '''9''': 630
The genome sequence of Inga laurina (Sw.) Willd. Description: Schley, Rowan J, et al. The genome sequence of Inga laurina (Sw.) Willd. ''Wellcome Open Res''. 2024; '''9''': 567
The genome sequence of knotweed leaf beetle, Gastrophysa polygoni (Linnaeus, 1758). Description: McCulloch, James. The genome sequence of knotweed leaf beetle, Gastrophysa polygoni (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 642
The genome sequence of Langmaid's Yellow Underwing moth, Noctua janthina (Denis & Schiffermuller) 1775. Description: Broad, Gavin R. The genome sequence of Langmaid's Yellow Underwing moth, Noctua janthina (Denis & Schiffermuller) 1775. ''Wellcome Open Res''. 2024; '''9''': 592
The genome sequence of Reeves' muntjac, Muntiacus reevesi (Ogilby, 1839). Description: Ewart, Nick, et al. The genome sequence of Reeves' muntjac, Muntiacus reevesi (Ogilby, 1839). ''Wellcome Open Res''. 2024; '''9''': 368
The genome sequence of Tenthredo amoena Gravenhorst, 1807. Description: Falk, Steven, et al. The genome sequence of Tenthredo amoena Gravenhorst, 1807. ''Wellcome Open Res''. 2024; '''9''': 660
The genome sequence of the Atlantic mackerel, Scomber scombrus Linnaeus, 1758. Description: Brennan, Mitchell, et al. The genome sequence of the Atlantic mackerel, Scomber scombrus Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 610
The genome sequence of the Bird-cherry Ermine moth, Yponomeuta evonymella (Linnaeus, 1758). Description: Boyes, Douglas, et al. The genome sequence of the Bird-cherry Ermine moth, Yponomeuta evonymella (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 618
The genome sequence of the Broom moth, Ceramica pisi Linnaeus, 1758. Description: Griffiths, Andy, et al. The genome sequence of the Broom moth, Ceramica pisi Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 539
The genome sequence of the cephid sawfly, Cephus spinipes (Panzer, 1800). Description: Broad, Gavin R, et al. The genome sequence of the cephid sawfly, Cephus spinipes (Panzer, 1800). ''Wellcome Open Res''. 2024; '''9''': 557
The genome sequence of the chlorophyte Marvania coccoides CCAP 251/1B (Naumann) Henley, Hironaka, Guillou, M. Buchheim, J. Buchheim, M. Fawley & K. Fawley 2004. Description: Allen, Rachel, et al. The genome sequence of the chlorophyte Marvania coccoides CCAP 251/1B (Naumann) Henley, Hironaka, Guillou, M. Buchheim, J. Buchheim, M. Fawley & K. Fawley 2004. ''Wellcome Open Res''. 2024; '''9''': 334
The genome sequence of the Coccidian parasite, Eimeria praecox (Apicomplexa: Eucoccidiorida). Description: Blake, Damer P. The genome sequence of the Coccidian parasite, Eimeria praecox (Apicomplexa: Eucoccidiorida). ''Wellcome Open Res''. 2024; '''9''': 331
The genome sequence of the Common Flat-body moth, Agonopterix heracliana Linnaeus, 1758. Description: Boyes, Douglas, et al. The genome sequence of the Common Flat-body moth, Agonopterix heracliana Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 329
The genome sequence of the Cotton Bollworm moth, Helicoverpa armigera (Hubner, 1808). Description: Holland, Peter W H. The genome sequence of the Cotton Bollworm moth, Helicoverpa armigera (Hubner, 1808). ''Wellcome Open Res''. 2024; '''9''': 428
The genome sequence of the cuckoo wrasse, Labrus mixtus Linnaeus 1758. Description: Heaton, Belle, et al. The genome sequence of the cuckoo wrasse, Labrus mixtus Linnaeus 1758. ''Wellcome Open Res''. 2024; '''9''': 549
The genome sequence of the cut surfclam, Spisula subtruncata (da Costa, 1778). Description: Adkins, Patrick, et al. The genome sequence of the cut surfclam, Spisula subtruncata (da Costa, 1778). ''Wellcome Open Res''. 2024; '''9''': 286
The genome sequence of the Dark Crimson Underwing moth, Catocala sponsa Linnaeus, 1767. Description: Broad, Gavin R. The genome sequence of the Dark Crimson Underwing moth, Catocala sponsa Linnaeus, 1767. ''Wellcome Open Res''. 2024; '''9''': 412
The genome sequence of the Essex Skipper butterfly, Thymelicus lineola (Ochsenheimer, 1808). Description: Lohse, Konrad, et al. The genome sequence of the Essex Skipper butterfly, Thymelicus lineola (Ochsenheimer, 1808). ''Wellcome Open Res''. 2024; '''9''': 452
The genome sequence of the European conger eel, Conger conger (Linnaeus, 1758). Description: Adkins, Patrick, et al. The genome sequence of the European conger eel, Conger conger (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 532
The genome sequence of the European harvest mouse, Micromys minutus (Pallas, 1771). Description: O'Brien, Michelle F, et al. The genome sequence of the European harvest mouse, Micromys minutus (Pallas, 1771). ''Wellcome Open Res''. 2024; '''9''': 394
The genome sequence of the Figwort Sawfly Tenthredo scrophulariae Linnaeus, 1758. Description: Falk, Steven, et al. The genome sequence of the Figwort Sawfly Tenthredo scrophulariae Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 650
The genome sequence of the German scorpionfly, Panorpa germanica Linnaeus, 1758. Description: Sivell, Duncan, et al. The genome sequence of the German scorpionfly, Panorpa germanica Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 285
The genome sequence of the Golden-tabbed robberfly, Eutolmus rufibarbis (Meigen, 1820). Description: Nash, Will J, et al. The genome sequence of the Golden-tabbed robberfly, Eutolmus rufibarbis (Meigen, 1820). ''Wellcome Open Res''. 2024; '''9''': 593
The genome sequence of the grey gurnard, Eutrigla gurnardus (Linnaeus, 1758). Description: Brittain, Rachel, et al. The genome sequence of the grey gurnard, Eutrigla gurnardus (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 307
The genome sequence of the hook-banded wasp hoverfly, Chrysotoxum festivum (Linnaeus, 1758). Description: Falk, Steven, et al. The genome sequence of the hook-banded wasp hoverfly, Chrysotoxum festivum (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 448
The genome sequence of the jet ant, Lasius fuliginosus (Latreille, 1798). Description: Crowley, Liam M. The genome sequence of the jet ant, Lasius fuliginosus (Latreille, 1798). ''Wellcome Open Res''. 2024; '''9''': 668
The genome sequence of the Long-tailed duck, Clangula hyemalis (Linnaeus, 1758). Description: O'Brien, Michelle F, et al. The genome sequence of the Long-tailed duck, Clangula hyemalis (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 475
The genome sequence of the Mauritius parakeet, Alexandrinus eques (formerly Psittacula eques) (A.Newton & E. Newton, 1876). Description: Morales, Hernan E, et al. The genome sequence of the Mauritius parakeet, Alexandrinus eques (formerly Psittacula eques) (A.Newton & E. Newton, 1876). ''Wellcome Open Res''. 2024; '''9''': 378
The genome sequence of the moss carder bee, Bombus muscorum (Linnaeus, 1758). Description: Broad, Gavin R, et al. The genome sequence of the moss carder bee, Bombus muscorum (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 397
The genome sequence of the Muslin Footman moth, Nudaria mundana (Linnaeus, 1761). Description: Crowley, Liam M, et al. The genome sequence of the Muslin Footman moth, Nudaria mundana (Linnaeus, 1761). ''Wellcome Open Res''. 2024; '''9''': 283
The genome sequence of the nematode Caenorhabditis drosophilae (Rhabditida, Rhabditidae) (Kiontke, 1997). Description: Kieninger, Manuela, et al. The genome sequence of the nematode Caenorhabditis drosophilae (Rhabditida, Rhabditidae) (Kiontke, 1997). ''Wellcome Open Res''. 2024; '''9''': 292
The genome sequence of the Oak Nycteoline moth, Nycteola revayana (Scopoli, 1772). Description: Boyes, Douglas, et al. The genome sequence of the Oak Nycteoline moth, Nycteola revayana (Scopoli, 1772). ''Wellcome Open Res''. 2024; '''9''': 258
The genome sequence of the Pacific oyster, Magallana gigas (Thunberg, 1793). Description: Mrowicki, Rob, et al. The genome sequence of the Pacific oyster, Magallana gigas (Thunberg, 1793). ''Wellcome Open Res''. 2024; '''9''': 284
The genome sequence of the particolored bat, Vespertilio murinus Linnaeus, 1758. Description: Vandendriessche, Bob, et al. The genome sequence of the particolored bat, Vespertilio murinus Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 403
The genome sequence of the Poplar Grey moth, Subacronicta megacephala (Denis & Schiffermuller, 1775). Description: Boyes, Douglas. The genome sequence of the Poplar Grey moth, Subacronicta megacephala (Denis & Schiffermuller, 1775). ''Wellcome Open Res''. 2024; '''9''': 696
The genome sequence of the red-crested pochard, Netta rufina (Pallas, 1773). Description: O'Brien, Michelle F, et al. The genome sequence of the red-crested pochard, Netta rufina (Pallas, 1773). ''Wellcome Open Res''. 2024; '''9''': 617
The genome sequence of the ruby bryozoan, Bugula neritina (Linnaeus, 1758). Description: Uhl, Rebekka, et al. The genome sequence of the ruby bryozoan, Bugula neritina (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 533
The genome sequence of the Sandhill Rustic moth Luperina nickerlii (Freyer, 1845) subspecies leechi Goater, 1976. Description: Spalding, Adrian, et al. The genome sequence of the Sandhill Rustic moth Luperina nickerlii (Freyer, 1845) subspecies leechi Goater, 1976. ''Wellcome Open Res''. 2024; '''9''': 382
The genome sequence of the sand star, Astropecten irregularis (Pennant, 1777). Description: Adkins, Patrick, et al. The genome sequence of the sand star, Astropecten irregularis (Pennant, 1777). ''Wellcome Open Res''. 2024; '''9''': 431
The genome sequence of the sardine, Sardina pilchardus (Walbaum, 1792). Description: Brittain, Rachel, et al. The genome sequence of the sardine, Sardina pilchardus (Walbaum, 1792). ''Wellcome Open Res''. 2024; '''9''': 434
The genome sequence of the silver stretch spider, Tetragnatha montana (Simon, 1874) (Araneae: Tetragnathidae). Description: McGregor, Alistair P, et al. The genome sequence of the silver stretch spider, Tetragnatha montana (Simon, 1874) (Araneae: Tetragnathidae). ''Wellcome Open Res''. 2024; '''9''': 288
The genome sequence of the silvery leafcutter bee, Megachile leachella Curtis, 1828. Description: Sivell, Olga, et al. The genome sequence of the silvery leafcutter bee, Megachile leachella Curtis, 1828. ''Wellcome Open Res''. 2024; '''9''': 415
The genome sequence of the Small Scabious Mining Bee, Andrena marginata Fabricius, 1776. Description: Mitchell, Ryan, et al. The genome sequence of the Small Scabious Mining Bee, Andrena marginata Fabricius, 1776. ''Wellcome Open Res''. 2024; '''9''': 447
The genome sequence of the Welsh wave moth, Venusia cambrica Curtis, 1839. Description: Prescott, Tom, et al. The genome sequence of the Welsh wave moth, Venusia cambrica Curtis, 1839. ''Wellcome Open Res''. 2024; '''9''': 703
The genome sequence of the whiskered bat, Myotis mystacinus (Kuhl, 1817). Description: Ryan, Hazel, et al. The genome sequence of the whiskered bat, Myotis mystacinus (Kuhl, 1817). ''Wellcome Open Res''. 2024; '''9''': 684
The genome sequence of the white-throated dipper, Cinclus cinclus (Linnaeus, 1758). Description: Sharp, Stuart P. The genome sequence of the white-throated dipper, Cinclus cinclus (Linnaeus, 1758). ''Wellcome Open Res''. 2024; '''9''': 645
The genome sequence of the yellow-girdled Dasysyrphus, Dasysyrphus tricinctus (Fallen, 1817). Description: Crowley, Liam M, et al. The genome sequence of the yellow-girdled Dasysyrphus, Dasysyrphus tricinctus (Fallen, 1817). ''Wellcome Open Res''. 2024; '''9''': 561
The genome sequence of the yellow mealworm beetle, Tenebrio molitor Linnaeus, 1758. Description: Mann, Darren, et al. The genome sequence of the yellow mealworm beetle, Tenebrio molitor Linnaeus, 1758. ''Wellcome Open Res''. 2024; '''9''': 459
The impact of rumen microbial composition on apparent digestibility, rumen fermentation and metabolism in Sanhe cows and Holstein cows of different parities under identical dietary conditions. Description: Liu, Zixin, et al. The impact of rumen microbial composition on apparent digestibility, rumen fermentation and metabolism in Sanhe cows and Holstein cows of different parities under identical dietary conditions. ''Front Vet Sci''. 2024; '''11''': 1463209
The investigation of the role of oral-originated Prevotella-induced inflammation in childhood asthma. Description: Yan, Tongtong, et al. The investigation of the role of oral-originated Prevotella-induced inflammation in childhood asthma. ''Front Microbiol''. 2024; '''15''': 1400079
The leaf idioblastome of the medicinal plant Catharanthus roseus is associated with stress resistance and alkaloid metabolism. Description: Guedes, Joana G, et al. The leaf idioblastome of the medicinal plant Catharanthus roseus is associated with stress resistance and alkaloid metabolism. ''J Exp Bot''. 2024 Jan 1; '''75''' (1):274-299
The protective role of commensal gut microbes and their metabolites against bacterial pathogens. Description: Cheng, Liqin, et al. The protective role of commensal gut microbes and their metabolites against bacterial pathogens. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2356275
The tissue virome of black-spotted frogs reveals a diversity of uncharacterized viruses. Description: Li, Chenxi, et al. The tissue virome of black-spotted frogs reveals a diversity of uncharacterized viruses. ''Virus Evol''. 2024; '''10''' (1):veae062
Time-restricted feeding ameliorates non-alcoholic fatty liver disease through modulating hepatic nicotinamide metabolism via gut microbiota remodeling. Description: Feng, Ruijia, et al. Time-restricted feeding ameliorates non-alcoholic fatty liver disease through modulating hepatic nicotinamide metabolism via gut microbiota remodeling. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2390164
Transcriptional landscape of the pMP7017 megaplasmid and its impact on the Bifidobacterium breve UCC2003 transcriptome. Description: Dineen, Rebecca L, et al. Transcriptional landscape of the pMP7017 megaplasmid and its impact on the Bifidobacterium breve UCC2003 transcriptome. ''Microb Biotechnol''. 2024 Jan; '''17''' (1):e14405
Transcriptome analysis of genes involved in the pathogenesis mechanism of potato virus Y in potato cultivar YouJin. Description: Yang, Tianqi, et al. Transcriptome analysis of genes involved in the pathogenesis mechanism of potato virus Y in potato cultivar YouJin. ''Front Microbiol''. 2024; '''15''': 1353814
Transcriptome analysis revealed potential mechanisms of channel catfish growth advantage over blue catfish in a tank culture environment. Description: Wang, Haolong, et al. Transcriptome analysis revealed potential mechanisms of channel catfish growth advantage over blue catfish in a tank culture environment. ''Front Genet''. 2024; '''15''': 1341555
Transcriptomic insights into the shift of trophic strategies in mixotrophic dinoflagellate Lepidodinium in the warming ocean. Description: Chen, Jiawei, et al. Transcriptomic insights into the shift of trophic strategies in mixotrophic dinoflagellate Lepidodinium in the warming ocean. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae087
Transcriptomic resources for Bagrada hilaris (Burmeister), a widespread invasive pest of Brassicales. Description: Sparks, Michael E, et al. Transcriptomic resources for Bagrada hilaris (Burmeister), a widespread invasive pest of Brassicales. ''PLoS One''. 2024; '''19''' (12):e0310186
Uncovering novel bacterial and archaeal diversity: genomic insights from metagenome-assembled genomes in Cuatro Cienegas, Coahuila. Description: Rodriguez-Cruz, Ulises E, et al. Uncovering novel bacterial and archaeal diversity: genomic insights from metagenome-assembled genomes in Cuatro Cienegas, Coahuila. ''Front Microbiol''. 2024; '''15''': 1369263
Unraveling site-specific seed formation abnormalities in Picea neoveitchii Mast. trees via widely metabolomic and transcriptomic analysis. Description: Li, Kaiyuan, et al. Unraveling site-specific seed formation abnormalities in Picea neoveitchii Mast. trees via widely metabolomic and transcriptomic analysis. ''Front Plant Sci''. 2024; '''15''': 1495784
Unveiling Prasinovirus diversity and host specificity through targeted enrichment in the South China Sea. Description: Thomy, Julie, et al. Unveiling Prasinovirus diversity and host specificity through targeted enrichment in the South China Sea. ''ISME Commun''. 2024 Jan; '''4''' (1):ycae109
Unveiling the regulatory mechanism of poly-gamma-glutamic acid on soil characteristics under drought stress through integrated metagenomics and metabolomics analysis. Description: Hong, Li, et al. Unveiling the regulatory mechanism of poly-gamma-glutamic acid on soil characteristics under drought stress through integrated metagenomics and metabolomics analysis. ''Front Microbiol''. 2024; '''15''': 1387223
Unveiling the whole genomic features and potential probiotic characteristics of novel Lactiplantibacillus plantarum HMX2. Description: Aziz, Tariq, et al. Unveiling the whole genomic features and potential probiotic characteristics of novel Lactiplantibacillus plantarum HMX2. ''Front Microbiol''. 2024; '''15''': 1504625
Valine induces inflammation and enhanced adipogenesis in lean mice by multi-omics analysis. Description: Zheng, Hui-Yi, et al. Valine induces inflammation and enhanced adipogenesis in lean mice by multi-omics analysis. ''Front Nutr''. 2024; '''11''': 1379390
Vancomycin relieves tacrolimus-induced hyperglycemia by eliminating gut bacterial beta-glucuronidase enzyme activity. Description: Li, Peixia, et al. Vancomycin relieves tacrolimus-induced hyperglycemia by eliminating gut bacterial beta-glucuronidase enzyme activity. ''Gut Microbes''. 2024 Jan-Dec; '''16''' (1):2310277
Viral diversity in wild rodents in the regions of Canaa de Carajas and Curionopolis, State of Para, Brazil. Description: Monteiro, Adriana Freitas Moraes, et al. Viral diversity in wild rodents in the regions of Canaa de Carajas and Curionopolis, State of Para, Brazil. ''Front Microbiol''. 2024; '''15''': 1502462
Virome analysis of New Zealand's bats reveals cross-species viral transmission among the Coronaviridae. Description: Waller, Stephanie J, et al. Virome analysis of New Zealand's bats reveals cross-species viral transmission among the Coronaviridae. ''Virus Evol''. 2024; '''10''' (1):veae008
Virome release of an invasive exotic plant species in southern France. Description: Moubset, Oumaima, et al. Virome release of an invasive exotic plant species in southern France. ''Virus Evol''. 2024; '''10''' (1):veae025
Whole-genome sequencing of marine water-derived Curvularia verruculosa KHW-7: a pioneering study. Description: Baranda, Payal, et al. Whole-genome sequencing of marine water-derived Curvularia verruculosa KHW-7: a pioneering study. ''Front Microbiol''. 2024; '''15''': 1363879
Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors. Description: Wang, Yan-Shu, et al. Chromosome-level genome assemblies of two littorinid marine snails indicate genetic basis of intertidal adaptation and ancient karyotype evolved from bilaterian ancestors. ''Gigascience''. 2024 Jan 2; '''13''':
Evolutionary genomics of three agricultural pest moths reveals rapid evolution of host adaptation and immune-related genes. Description: Weng, Yi-Ming, et al. Evolutionary genomics of three agricultural pest moths reveals rapid evolution of host adaptation and immune-related genes. ''Gigascience''. 2024 Jan 2; '''13''':
Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce. Description: Cao, Shuai, et al. Gapless genome assembly and epigenetic profiles reveal gene regulation of whole-genome triplication in lettuce. ''Gigascience''. 2024 Jan 2; '''13''':
Pervasive associations between dark septate endophytic fungi with tree root and soil microbiomes across Europe. Description: Netherway, Tarquin, et al. Pervasive associations between dark septate endophytic fungi with tree root and soil microbiomes across Europe. ''Nat Commun''. 2024 Jan 2; '''15''' (1):159
The genomes of 5 underutilized Papilionoideae crops provide insights into root nodulation and disease resistance. Description: Yuan, Lihua, et al. The genomes of 5 underutilized Papilionoideae crops provide insights into root nodulation and disease resistance. ''Gigascience''. 2024 Jan 2; '''13''':
The genomes of Dahlia pinnata, Cosmos bipinnatus, and Bidens alba in tribe Coreopsideae provide insights into polyploid evolution and inulin biosynthesis. Description: Wang, Hengchao, et al. The genomes of Dahlia pinnata, Cosmos bipinnatus, and Bidens alba in tribe Coreopsideae provide insights into polyploid evolution and inulin biosynthesis. ''Gigascience''. 2024 Jan 2; '''13''':
New dienelactone hydrolase from microalgae bacterial community-Antibiofilm activity against fish pathogens and potential applications for aquaculture. Description: Bergmann, Lutgardis, et al. New dienelactone hydrolase from microalgae bacterial community-Antibiofilm activity against fish pathogens and potential applications for aquaculture. ''Sci Rep''. 2024 Jan 3; '''14''' (1):377
First Genome Sequence of the Microcolonial Black Fungus Saxispiralis lemnorum MUM 23.14: Insights into the Unique Genomic Traits of the Aeminiaceae Family. Description: Paiva, Diana S, et al. First Genome Sequence of the Microcolonial Black Fungus Saxispiralis lemnorum MUM 23.14: Insights into the Unique Genomic Traits of the Aeminiaceae Family. ''Microorganisms''. 2024 Jan 4; '''12''' (1):
Virome analysis of Desmodus rotundus tissue samples from the Amazon region. Description: Albuquerque, Nadia K, et al. Virome analysis of Desmodus rotundus tissue samples from the Amazon region. ''BMC Genomics''. 2024 Jan 4; '''25''' (1):34
A chromosome-level genome assembly for Onobrychis viciifolia reveals gene copy number gain underlying enhanced proanthocyanidin biosynthesis. Description: He, Junyi, et al. A chromosome-level genome assembly for Onobrychis viciifolia reveals gene copy number gain underlying enhanced proanthocyanidin biosynthesis. ''Commun Biol''. 2024 Jan 5; '''7''' (1):19
AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes. Description: Hu, Ruirui, et al. AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D690-D700
Changes in Microbiota Composition during the Anaerobic Digestion of Macroalgae in a Three-Stage Bioreactor. Description: Vasiliauskiene, Dovile, et al. Changes in Microbiota Composition during the Anaerobic Digestion of Macroalgae in a Three-Stage Bioreactor. ''Microorganisms''. 2024 Jan 5; '''12''' (1):
Dapagliflozin ameliorates diabetes-induced spermatogenic dysfunction by modulating the adenosine metabolism along the gut microbiota-testis axis. Description: Jin, Zirun, et al. Dapagliflozin ameliorates diabetes-induced spermatogenic dysfunction by modulating the adenosine metabolism along the gut microbiota-testis axis. ''Sci Rep''. 2024 Jan 5; '''14''' (1):641
gcPathogen: a comprehensive genomic resource of human pathogens for public health. Description: Guo, Chongye, et al. gcPathogen: a comprehensive genomic resource of human pathogens for public health. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D714-D723
SCAN: Spatiotemporal Cloud Atlas for Neural cells. Description: Deng, Yushan, et al. SCAN: Spatiotemporal Cloud Atlas for Neural cells. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D998-D1009
SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding. Description: Yang, Zhiquan, et al. SoyMD: a platform combining multi-omics data with various tools for soybean research and breeding. ''Nucleic Acids Res''. 2024 Jan 5; '''52''' (D1):D1639-D1650
Effects of Different Heat Treatments on Yak Milk Proteins on Intestinal Microbiota and Metabolism. Description: Shu, Senbiao, et al. Effects of Different Heat Treatments on Yak Milk Proteins on Intestinal Microbiota and Metabolism. ''Foods''. 2024 Jan 6; '''13''' (2):
Aerobic denitrification as an N2O source from microbial communities. Description: Roothans, Nina, et al. Aerobic denitrification as an N2O source from microbial communities. ''ISME J''. 2024 Jan 8; '''18''' (1):
Anaerobic ammonium oxidation coupled to iron(III) reduction catalyzed by a lithoautotrophic nitrate-reducing iron(II) oxidizing enrichment culture. Description: Zhang, Hong-Bin, et al. Anaerobic ammonium oxidation coupled to iron(III) reduction catalyzed by a lithoautotrophic nitrate-reducing iron(II) oxidizing enrichment culture. ''ISME J''. 2024 Jan 8; '''18''' (1):
Bacterial growth and environmental adaptation via thiamine biosynthesis and thiamine-mediated metabolic interactions. Description: Xu, Xihui, et al. Bacterial growth and environmental adaptation via thiamine biosynthesis and thiamine-mediated metabolic interactions. ''ISME J''. 2024 Jan 8; '''18''' (1):
Biotic interactions between benthic infauna and aerobic methanotrophs mediate methane fluxes from coastal sediments. Description: Broman, Elias, et al. Biotic interactions between benthic infauna and aerobic methanotrophs mediate methane fluxes from coastal sediments. ''ISME J''. 2024 Jan 8; '''18''' (1):
Characterizing core microbiota and regulatory functions of the pig gut microbiome. Description: Hu, Jun, et al. Characterizing core microbiota and regulatory functions of the pig gut microbiome. ''ISME J''. 2024 Jan 8; '''18''' (1):
Chemolithoautotrophic diazotrophs dominate dark nitrogen fixation in mangrove sediments. Description: Wang, Shasha, et al. Chemolithoautotrophic diazotrophs dominate dark nitrogen fixation in mangrove sediments. ''ISME J''. 2024 Jan 8; '''18''' (1):
Chronic exposure to polycyclic aromatic hydrocarbons alters skin virome composition and virus-host interactions. Description: Du, Shicong, et al. Chronic exposure to polycyclic aromatic hydrocarbons alters skin virome composition and virus-host interactions. ''ISME J''. 2024 Jan 8; '''18''' (1):
Commensal protist Tritrichomonas musculus exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota. Description: Popovic, Ana, et al. Commensal protist Tritrichomonas musculus exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota. ''ISME J''. 2024 Jan 8; '''18''' (1):
Convergence of gut phage communities but not bacterial communities following wild mouse bacteriophage transplantation into captive house mice. Description: Cizkova, Dagmar, et al. Convergence of gut phage communities but not bacterial communities following wild mouse bacteriophage transplantation into captive house mice. ''ISME J''. 2024 Jan 8; '''18''' (1):
Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms. Description: Zepernick, Brittany N, et al. Declines in ice cover are accompanied by light limitation responses and community change in freshwater diatoms. ''ISME J''. 2024 Jan 8; '''18''' (1):
Ecological relevance of flagellar motility in soil bacterial communities. Description: Ramoneda, Josep, et al. Ecological relevance of flagellar motility in soil bacterial communities. ''ISME J''. 2024 Jan 8; '''18''' (1):
Four years of climate warming reduced dark carbon fixation in coastal wetlands. Description: Liu, Bolin, et al. Four years of climate warming reduced dark carbon fixation in coastal wetlands. ''ISME J''. 2024 Jan 8; '''18''' (1):
Global biogeography and ecological implications of cobamide-producing prokaryotes. Description: Wang, Jichen, et al. Global biogeography and ecological implications of cobamide-producing prokaryotes. ''ISME J''. 2024 Jan 8; '''18''' (1):
High niche specificity and host genetic diversity of groundwater viruses. Description: Gios, Emilie, et al. High niche specificity and host genetic diversity of groundwater viruses. ''ISME J''. 2024 Jan 8; '''18''' (1):
Host genetic variation and specialized metabolites from wheat leaves enriches for phyllosphere Pseudomonas spp. with enriched antibiotic resistomes. Description: Xiang, Qian, et al. Host genetic variation and specialized metabolites from wheat leaves enriches for phyllosphere Pseudomonas spp. with enriched antibiotic resistomes. ''ISME J''. 2024 Jan 8; '''18''' (1):
Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles. Description: Nishikawa, Yohei, et al. Large-scale single-virus genomics uncovers hidden diversity of river water viruses and diversified gene profiles. ''ISME J''. 2024 Jan 8; '''18''' (1):
Microorganisms oxidize glucose through distinct pathways in permeable and cohesive sediments. Description: Hutchinson, Tess F, et al. Microorganisms oxidize glucose through distinct pathways in permeable and cohesive sediments. ''ISME J''. 2024 Jan 8; '''18''' (1):
Niche differentiation within bacterial key-taxa in stratified surface waters of the Southern Pacific Gyre. Description: Oggerin, Monike, et al. Niche differentiation within bacterial key-taxa in stratified surface waters of the Southern Pacific Gyre. ''ISME J''. 2024 Jan 8; '''18''' (1):
Nitrite-oxidizing bacteria adapted to low-oxygen conditions dominate nitrite oxidation in marine oxygen minimum zones. Description: Fortin, Samantha G, et al. Nitrite-oxidizing bacteria adapted to low-oxygen conditions dominate nitrite oxidation in marine oxygen minimum zones. ''ISME J''. 2024 Jan 8; '''18''' (1):
Pectin supplementation accelerates post-antibiotic gut microbiome reconstitution orchestrated with reduced gut redox potential. Description: Xu, Rongying, et al. Pectin supplementation accelerates post-antibiotic gut microbiome reconstitution orchestrated with reduced gut redox potential. ''ISME J''. 2024 Jan 8; '''18''' (1):
Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column. Description: Ding, Su, et al. Production of structurally diverse sphingolipids by anaerobic marine bacteria in the euxinic Black Sea water column. ''ISME J''. 2024 Jan 8; '''18''' (1):
Proteomes of native and non-native symbionts reveal responses underpinning host-symbiont specificity in the cnidarian-dinoflagellate symbiosis. Description: Mashini, Amir, et al. Proteomes of native and non-native symbionts reveal responses underpinning host-symbiont specificity in the cnidarian-dinoflagellate symbiosis. ''ISME J''. 2024 Jan 8; '''18''' (1):
Protist predation promotes antimicrobial resistance spread through antagonistic microbiome interactions. Description: Liu, Chen, et al. Protist predation promotes antimicrobial resistance spread through antagonistic microbiome interactions. ''ISME J''. 2024 Jan 8; '''18''' (1):
Reversed oxidative TCA (roTCA) for carbon fixation by an Acidimicrobiia strain from a saline lake. Description: Gao, Lei, et al. Reversed oxidative TCA (roTCA) for carbon fixation by an Acidimicrobiia strain from a saline lake. ''ISME J''. 2024 Jan 8; '''18''' (1):
Rumen microbiome-driven insight into bile acid metabolism and host metabolic regulation. Description: Zhang, Boyan, et al. Rumen microbiome-driven insight into bile acid metabolism and host metabolic regulation. ''ISME J''. 2024 Jan 8; '''18''' (1):
Scallop-bacteria symbiosis from the deep sea reveals strong genomic coupling in the absence of cellular integration. Description: Lin, Yi-Tao, et al. Scallop-bacteria symbiosis from the deep sea reveals strong genomic coupling in the absence of cellular integration. ''ISME J''. 2024 Jan 8; '''18''' (1):
Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage. Description: Garritano, Alessandro N, et al. Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage. ''ISME J''. 2024 Jan 8; '''18''' (1):
Strain-level diversity in sulfonamide biodegradation: adaptation of Paenarthrobacter to sulfonamides. Description: Huang, Yue, et al. Strain-level diversity in sulfonamide biodegradation: adaptation of Paenarthrobacter to sulfonamides. ''ISME J''. 2024 Jan 8; '''18''' (1):
Temperature modulates dominance of a superinfecting Arctic virus in its unicellular algal host. Description: Meyer, Claudia, et al. Temperature modulates dominance of a superinfecting Arctic virus in its unicellular algal host. ''ISME J''. 2024 Jan 8; '''18''' (1):
Ecological roles of nano-picoplankton in stratified waters of an embayment in the southern Benguela. Description: Dames, Nicole R, et al. Ecological roles of nano-picoplankton in stratified waters of an embayment in the southern Benguela. ''FEMS Microbiol Lett''. 2024 Jan 9; '''371''':
Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. Description: Brown, Alec, et al. Genome-wide patterns of non-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. ''bioRxiv''. 2024 Jan 9;
Functionally coherent transcriptional responses of Jatropha curcas and Pseudomonas fragi for rhizosphere mediated degradation of pyrene. Description: Singha, L Paikhomba, et al. Functionally coherent transcriptional responses of Jatropha curcas and Pseudomonas fragi for rhizosphere mediated degradation of pyrene. ''Sci Rep''. 2024 Jan 10; '''14''' (1):1014
Targeted Metagenomic Databases Provide Improved Analysis of Microbiota Samples. Description: Baud, Agnes, et al. Targeted Metagenomic Databases Provide Improved Analysis of Microbiota Samples. ''Microorganisms''. 2024 Jan 10; '''12''' (1):
Altered microbiota, antimicrobial resistance genes, and functional enzyme profiles in the rumen of yak calves fed with milk replacer. Description: Zhuang, Yimin, et al. Altered microbiota, antimicrobial resistance genes, and functional enzyme profiles in the rumen of yak calves fed with milk replacer. ''Microbiol Spectr''. 2024 Jan 11; '''12''' (1):e0131423
Effects of supplemental vitamin A on reproduction and antioxidative status of aged laying hens, and growth, blood indices and immunity of their offspring. Description: El-Ratel, Ibrahim T, et al. Effects of supplemental vitamin A on reproduction and antioxidative status of aged laying hens, and growth, blood indices and immunity of their offspring. ''Poult Sci''. 2024 Jan 11; '''103''' (3):103453
Structural changes in the gut virome of patients with atherosclerotic cardiovascular disease. Description: Li, Youshan, et al. Structural changes in the gut virome of patients with atherosclerotic cardiovascular disease. ''Microbiol Spectr''. 2024 Jan 11; '''12''' (1):e0105023
Identification of potential microbial risk factors associated with fecal indicator exceedances at recreational beaches. Description: Saleem, Faizan, et al. Identification of potential microbial risk factors associated with fecal indicator exceedances at recreational beaches. ''Environ Microbiome''. 2024 Jan 15; '''19''' (1):4
Abnormal Glucose Tolerance in Women Diagnosed With Gestational Diabetes (WHO 2013) 10 Years After Index Pregnancy. Description: Kgosidialwa, Oratile, et al. Abnormal Glucose Tolerance in Women Diagnosed With Gestational Diabetes (WHO 2013) 10 Years After Index Pregnancy. ''J Endocr Soc''. 2024 Jan 16; '''8''' (3):bvae013
An Antarctic lichen isolate (Cladonia borealis) genome reveals potential adaptation to extreme environments. Description: Cho, Minjoo, et al. An Antarctic lichen isolate (Cladonia borealis) genome reveals potential adaptation to extreme environments. ''Sci Rep''. 2024 Jan 16; '''14''' (1):1342
Integrative network analysis suggests prioritised drugs for atopic dermatitis. Description: Federico, Antonio, et al. Integrative network analysis suggests prioritised drugs for atopic dermatitis. ''J Transl Med''. 2024 Jan 16; '''22''' (1):64
Toxinome-the bacterial protein toxin database. Description: Danov, Aleks, et al. Toxinome-the bacterial protein toxin database. ''mBio''. 2024 Jan 16; '''15''' (1):e0191123
Crystal structure, optical characterization, conduction and relaxation mechanisms of a new hybrid compound (C(6)H(9)N(2))(2)[Sb(2)Cl(8)]. Description: Chaabane, I, et al. Crystal structure, optical characterization, conduction and relaxation mechanisms of a new hybrid compound (C(6)H(9)N(2))(2)[Sb(2)Cl(8)]. ''RSC Adv''. 2024 Jan 17; '''14''' (5):3588-3598
Comparative analysis of retroviral Gag-host cell interactions: focus on the nuclear interactome. Description: Lambert, Gregory S, et al. Comparative analysis of retroviral Gag-host cell interactions: focus on the nuclear interactome. ''bioRxiv''. 2024 Jan 18;
Metagenomic of Liver Tissue Identified at Least Two Genera of Totivirus-like Viruses in Molossus molossus Bats. Description: Couto, Roseane da Silva, et al. Metagenomic of Liver Tissue Identified at Least Two Genera of Totivirus-like Viruses in Molossus molossus Bats. ''Microorganisms''. 2024 Jan 19; '''12''' (1):
A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches. Description: Wang, Wenkang, et al. A comprehensive computational benchmark for evaluating deep learning-based protein function prediction approaches. ''Brief Bioinform''. 2024 Jan 22; '''25''' (2):
The Gut Microbiome Correlated to Chemotherapy Efficacy in Diffuse Large B-Cell Lymphoma Patients. Description: Xu, Zhuo-Fan, et al. The Gut Microbiome Correlated to Chemotherapy Efficacy in Diffuse Large B-Cell Lymphoma Patients. ''Hematol Rep''. 2024 Jan 22; '''16''' (1):63-75
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism. Description: Miao, Zhuangzhuang, et al. Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism. ''mSystems''. 2024 Jan 23; '''9''' (1):e0101323
Coordination chemistry effects of the space-demanding solvent molecule N,N'-dimethylpropyleneurea. Description: Lundberg, Daniel, et al. Coordination chemistry effects of the space-demanding solvent molecule N,N'-dimethylpropyleneurea. ''Dalton Trans''. 2024 Jan 23; '''53''' (4):1817-1832
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces. Description: Rozwalak, Piotr, et al. Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces. ''Nat Commun''. 2024 Jan 23; '''15''' (1):495
Chromosome-level genome of spider Pardosa pseudoannulata and cuticle protein genes in environmental stresses. Description: Yu, Na, et al. Chromosome-level genome of spider Pardosa pseudoannulata and cuticle protein genes in environmental stresses. ''Sci Data''. 2024 Jan 24; '''11''' (1):121
Impact of Anthropogenic Activities on Microbial Community Structure in Riverbed Sediments of East Kazakhstan. Description: Muter, Olga, et al. Impact of Anthropogenic Activities on Microbial Community Structure in Riverbed Sediments of East Kazakhstan. ''Microorganisms''. 2024 Jan 24; '''12''' (2):
Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. Description: Behr, Jan Helge, et al. Long-term conservation tillage with reduced nitrogen fertilization intensity can improve winter wheat health via positive plant-microorganism feedback in the rhizosphere. ''FEMS Microbiol Ecol''. 2024 Jan 24; '''100''' (2):
Rhizosphere assembly alters along a chronosequence in the Hallstatter glacier forefield (Dachstein, Austria). Description: Wicaksono, Wisnu Adi, et al. Rhizosphere assembly alters along a chronosequence in the Hallstatter glacier forefield (Dachstein, Austria). ''FEMS Microbiol Ecol''. 2024 Jan 24; '''100''' (2):
An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings. Description: Tshiabuila, Derek, et al. An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable For Genomic Surveillance Within Clinical Diagnostic Settings. ''medRxiv''. 2024 Jan 25;
Chromosome-level genome assembly of Hippophae gyantsensis. Description: Chen, Mingyue, et al. Chromosome-level genome assembly of Hippophae gyantsensis. ''Sci Data''. 2024 Jan 25; '''11''' (1):126
Eukaryotic genomic data uncover an extensive host range of mirusviruses. Description: Zhao, Hongda, et al. Eukaryotic genomic data uncover an extensive host range of mirusviruses. ''bioRxiv''. 2024 Jan 25;
Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing. Description: Levine, Zoe C, et al. Investigating the etiologies of non-malarial febrile illness in Senegal using metagenomic sequencing. ''Nat Commun''. 2024 Jan 25; '''15''' (1):747
Characterization and analysis of multi-organ full-length transcriptomes in Sphaeropteris brunoniana and Alsophila latebrosa highlight secondary metabolism and chloroplast RNA editing pattern of tree ferns. Description: Peng, Yang, et al. Characterization and analysis of multi-organ full-length transcriptomes in Sphaeropteris brunoniana and Alsophila latebrosa highlight secondary metabolism and chloroplast RNA editing pattern of tree ferns. ''BMC Plant Biol''. 2024 Jan 26; '''24''' (1):73
Functional Evolution of Pseudofabraea citricarpa as an Adaptation to Temperature Change. Description: Liu, Saifei, et al. Functional Evolution of Pseudofabraea citricarpa as an Adaptation to Temperature Change. ''J Fungi (Basel)''. 2024 Jan 28; '''10''' (2):
Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes. Description: Zaccaron, Alex Z, et al. Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes. ''BMC Biol''. 2024 Jan 29; '''22''' (1):25
Heat Shock Protein Genes Affect the Rapid Cold Hardening Ability of Two Invasive Tephritids. Description: Wang, Yuning, et al. Heat Shock Protein Genes Affect the Rapid Cold Hardening Ability of Two Invasive Tephritids. ''Insects''. 2024 Jan 29; '''15''' (2):
Exploring virus-host-environment interactions in a chemotrophic-based underground estuary. Description: Ghaly, Timothy M, et al. Exploring virus-host-environment interactions in a chemotrophic-based underground estuary. ''Environ Microbiome''. 2024 Jan 30; '''19''' (1):9
Integrated Transcriptomics and Metabolomics Analysis Reveals the Effects of Cutting on the Synthesis of Flavonoids and Saponins in Chinese Herbal Medicine Astragalus mongholious. Description: Guo, Xu, et al. Integrated Transcriptomics and Metabolomics Analysis Reveals the Effects of Cutting on the Synthesis of Flavonoids and Saponins in Chinese Herbal Medicine Astragalus mongholious. ''Metabolites''. 2024 Jan 30; '''14''' (2):
nail: software for high-speed, high-sensitivity protein sequence annotation. Description: Roddy, Jack W, et al. nail: software for high-speed, high-sensitivity protein sequence annotation. ''bioRxiv''. 2024 Jan 30;
Average Nucleotide Identity based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. Description: Raghuram, Vishnu, et al. Average Nucleotide Identity based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. ''bioRxiv''. 2024 Jan 31;
Unveiling CRESS DNA Virus Diversity in Oysters by Virome. Description: Zhu, Peng, et al. Unveiling CRESS DNA Virus Diversity in Oysters by Virome. ''Viruses''. 2024 Jan 31; '''16''' (2):
A Massive Proteogenomic Screen Identifies Thousands of Novel Peptides From the Human "Dark" Proteome. Description: Cao, Xiaolong, et al. A Massive Proteogenomic Screen Identifies Thousands of Novel Peptides From the Human "Dark" Proteome. ''Mol Cell Proteomics''. 2024 Feb; '''23''' (2):100719
A New Member of the Metal-Porphyrin Frameworks Family: Structure, Physicochemical Properties, Hydrogen and Carbon Dioxide Adsorption. Description: A New Member of the Metal-Porphyrin Frameworks Family: Structure, Physicochemical Properties, Hydrogen and Carbon Dioxide Adsorption. ''''. 2024 Feb; '''13''' (2):e202300100
A tick saliva serpin, IxsS17 inhibits host innate immune system proteases and enhances host colonization by Lyme disease agent. Description: Nguyen, Thu-Thuy, et al. A tick saliva serpin, IxsS17 inhibits host innate immune system proteases and enhances host colonization by Lyme disease agent. ''PLoS Pathog''. 2024 Feb; '''20''' (2):e1012032
Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China. Description: Wang, Zheng-Feng, et al. Chromosome-level genome assembly and demographic history of Euryodendron excelsum in monotypic genus endemic to China. ''DNA Res''. 2024 Feb 1; '''31''' (1):
Comparative genomics reveals distinct diversification patterns among LysR-type transcriptional regulators in the ESKAPE pathogen Pseudomonas aeruginosa. Description: Deery, Jamie, et al. Comparative genomics reveals distinct diversification patterns among LysR-type transcriptional regulators in the ESKAPE pathogen Pseudomonas aeruginosa. ''Microb Genom''. 2024 Feb; '''10''' (2):
Differential peripheral immune signatures elicited by vegan versus ketogenic diets in humans. Description: Link, Verena M, et al. Differential peripheral immune signatures elicited by vegan versus ketogenic diets in humans. ''Nat Med''. 2024 Feb; '''30''' (2):560-572
Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution. Description: Wang, Kejun, et al. Duck pan-genome reveals two transposon insertions caused bodyweight enlarging and white plumage phenotype formation during evolution. ''Imeta''. 2024 Feb; '''3''' (1):e154
Environmental viromes reveal global virosphere of deep-sea sediment RNA viruses. Description: Zhang, Xinyi, et al. Environmental viromes reveal global virosphere of deep-sea sediment RNA viruses. ''J Adv Res''. 2024 Feb; '''56''': 87-102
Functional and evolutionary significance of unknown genes from uncultivated taxa. Description: Rodriguez Del Rio, Alvaro, et al. Functional and evolutionary significance of unknown genes from uncultivated taxa. ''Nature''. 2024 Feb; '''626''' (7998):377-384
GH136-encoding gene (perB) is involved in gut colonization and persistence by Bifidobacterium bifidum PRL2010. Description: Rizzo, Sonia Mirjam, et al. GH136-encoding gene (perB) is involved in gut colonization and persistence by Bifidobacterium bifidum PRL2010. ''Microb Biotechnol''. 2024 Feb; '''17''' (2):e14406
Hiding in plain sight: The discovery of complete genomes of 11 hypothetical spindle-shaped viruses that putatively infect mesophilic ammonia-oxidizing archaea. Description: Ni, Yimin, et al. Hiding in plain sight: The discovery of complete genomes of 11 hypothetical spindle-shaped viruses that putatively infect mesophilic ammonia-oxidizing archaea. ''Environ Microbiol Rep''. 2024 Feb; '''16''' (1):e13230
Long non-coding RNAs mediate fish gene expression in response to ocean acidification. Description: Kang, Jingliang, et al. Long non-coding RNAs mediate fish gene expression in response to ocean acidification. ''Evol Appl''. 2024 Feb; '''17''' (2):e13655
Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition. Description: Sanchez, Pablo, et al. Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition. ''Sci Data''. 2024 Feb 1; '''11''' (1):154
The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites. Description: Cepeda, Axl S, et al. The Genome of Plasmodium gonderi: Insights into the Evolution of Human Malaria Parasites. ''Genome Biol Evol''. 2024 Feb 1; '''16''' (2):
ViromeFlowX: a Comprehensive Nextflow-based Automated Workflow for Mining Viral Genomes from Metagenomic Sequencing Data. Description: Wang, Xiaokai, et al. ViromeFlowX: a Comprehensive Nextflow-based Automated Workflow for Mining Viral Genomes from Metagenomic Sequencing Data. ''Microb Genom''. 2024 Feb; '''10''' (2):
Washed microbiota transplantation reduces glycemic variability in unstable diabetes. Description: Li, Yangyang, et al. Washed microbiota transplantation reduces glycemic variability in unstable diabetes. ''J Diabetes''. 2024 Feb; '''16''' (2):e13485
Two chromosome-level genomes of Smittia aterrima and Smittia pratorum (Diptera, Chironomidae). Description: Fu, Yue, et al. Two chromosome-level genomes of Smittia aterrima and Smittia pratorum (Diptera, Chironomidae). ''Sci Data''. 2024 Feb 3; '''11''' (1):165
Gut microbiota-derived LCA mediates the protective effect of PEDV infection in piglets. Description: Xing, Jun-Hong, et al. Gut microbiota-derived LCA mediates the protective effect of PEDV infection in piglets. ''Microbiome''. 2024 Feb 5; '''12''' (1):20
A broad wastewater screening and clinical data surveillance for virus-related diseases in the metropolitan Detroit area in Michigan. Description: Li, Yabing, et al. A broad wastewater screening and clinical data surveillance for virus-related diseases in the metropolitan Detroit area in Michigan. ''Hum Genomics''. 2024 Feb 6; '''18''' (1):14
fosA11, a novel chromosomal-encoded fosfomycin resistance gene identified in Providencia rettgeri. Description: Lu, Wei, et al. fosA11, a novel chromosomal-encoded fosfomycin resistance gene identified in Providencia rettgeri. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0254223
Oral microbiome associated with differential ratios of Porphyromonas gingivalis and Streptococcus cristatus. Description: Wang, Qingguo, et al. Oral microbiome associated with differential ratios of Porphyromonas gingivalis and Streptococcus cristatus. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0348223
Prophage enhances the ability of deep-sea bacterium Shewanella psychrophila WP2 to utilize D-amino acid. Description: Tan, Xiaoli, et al. Prophage enhances the ability of deep-sea bacterium Shewanella psychrophila WP2 to utilize D-amino acid. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0326323
Temporal development and potential interactions between the gut microbiome and resistome in early childhood. Description: Zhao, Lanlan, et al. Temporal development and potential interactions between the gut microbiome and resistome in early childhood. ''Microbiol Spectr''. 2024 Feb 6; '''12''' (2):e0317723
Viral Communities Contribute More to the Lysis of Antibiotic-Resistant Bacteria than the Transduction of Antibiotic Resistance Genes in Anaerobic Digestion Revealed by Metagenomics. Description: Zhang, Junya, et al. Viral Communities Contribute More to the Lysis of Antibiotic-Resistant Bacteria than the Transduction of Antibiotic Resistance Genes in Anaerobic Digestion Revealed by Metagenomics. ''Environ Sci Technol''. 2024 Feb 6; '''58''' (5):2346-2359
Chromosome-level genome assembly of navel orange cv. Gannanzao (Citrus sinensis Osbeck cv. Gannanzao). Description: Xiong, Zhiwei, et al. Chromosome-level genome assembly of navel orange cv. Gannanzao (Citrus sinensis Osbeck cv. Gannanzao). ''G3 (Bethesda)''. 2024 Feb 7; '''14''' (2):
High-quality genome of the zoophytophagous stink bug, Nesidiocoris tenuis, informs their food habit adaptation. Description: Shibata, Tomofumi, et al. High-quality genome of the zoophytophagous stink bug, Nesidiocoris tenuis, informs their food habit adaptation. ''G3 (Bethesda)''. 2024 Feb 7; '''14''' (2):
Metal Complexes Containing Homoleptic Diorganoselenium(II) Ligands: Synthesis, Characterization and Investigation of Optical Properties. Description: Dumitras, Darius, et al. Metal Complexes Containing Homoleptic Diorganoselenium(II) Ligands: Synthesis, Characterization and Investigation of Optical Properties. ''Molecules''. 2024 Feb 8; '''29''' (4):
Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity. Description: Raju, Sajan C, et al. Microbial-derived imidazole propionate links the heart failure-associated microbiome alterations to disease severity. ''Genome Med''. 2024 Feb 8; '''16''' (1):27
Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes. Description: Hernandez, Greco, et al. Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes. ''Nucleic Acids Res''. 2024 Feb 9; '''52''' (3):1064-1079
Snowprint: a predictive tool for genetic biosensor discovery. Description: d'Oelsnitz, Simon, et al. Snowprint: a predictive tool for genetic biosensor discovery. ''Commun Biol''. 2024 Feb 9; '''7''' (1):163
A high-quality genome assembly of the waterlily aphid Rhopalosiphum nymphaeae. Description: Wang, Yangzi, et al. A high-quality genome assembly of the waterlily aphid Rhopalosiphum nymphaeae. ''Sci Data''. 2024 Feb 13; '''11''' (1):194
Isolation, characterization, and circulation sphere of a filovirus in fruit bats. Description: He, Biao, et al. Isolation, characterization, and circulation sphere of a filovirus in fruit bats. ''Proc Natl Acad Sci U S A''. 2024 Feb 13; '''121''' (7):e2313789121
Metagenomic analysis of carbohydrate-active enzymes and their contribution to marine sediment biodiversity. Description: Lopez-Sanchez, Rafael, et al. Metagenomic analysis of carbohydrate-active enzymes and their contribution to marine sediment biodiversity. ''World J Microbiol Biotechnol''. 2024 Feb 13; '''40''' (3):95
Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones. Description: Sun, Hao, et al. Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones. ''Microbiome''. 2024 Feb 14; '''12''' (1):27
Prevotella copri variants among a single host diverge in sphingolipid production. Description: Xiao, Xieyue, et al. Prevotella copri variants among a single host diverge in sphingolipid production. ''mBio''. 2024 Feb 14; '''15''' (2):e0240923
Metagenomic Analysis of Antarctic Ocean near the King Sejong Station Reveals the Diversity of Carotenoid Biosynthetic Genes. Description: Cho, Woo Yeon, et al. Metagenomic Analysis of Antarctic Ocean near the King Sejong Station Reveals the Diversity of Carotenoid Biosynthetic Genes. ''Microorganisms''. 2024 Feb 15; '''12''' (2):
A genome and gene catalog of the aquatic microbiomes of the Tibetan Plateau. Description: Cheng, Mingyue, et al. A genome and gene catalog of the aquatic microbiomes of the Tibetan Plateau. ''Nat Commun''. 2024 Feb 16; '''15''' (1):1438
Analysis of Antibiotic Resistance Genes in Water Reservoirs and Related Wastewater from Animal Farms in Central China. Description: Rui, Yapei, et al. Analysis of Antibiotic Resistance Genes in Water Reservoirs and Related Wastewater from Animal Farms in Central China. ''Microorganisms''. 2024 Feb 16; '''12''' (2):
Distinct regulatory networks control toxin gene expression in elapid and viperid snakes. Description: Modahl, Cassandra M, et al. Distinct regulatory networks control toxin gene expression in elapid and viperid snakes. ''BMC Genomics''. 2024 Feb 16; '''25''' (1):186
A chromosome-level genome assembly of the forestry pest Coronaproctus castanopsis. Description: Huang, Yi-Xin, et al. A chromosome-level genome assembly of the forestry pest Coronaproctus castanopsis. ''Sci Data''. 2024 Feb 17; '''11''' (1):218
Green Waste Compost Impacts Microbial Functions Related to Carbohydrate Use and Active Dispersal in Plant Pathogen-Infested Soil. Description: LeBlanc, Nicholas R, et al. Green Waste Compost Impacts Microbial Functions Related to Carbohydrate Use and Active Dispersal in Plant Pathogen-Infested Soil. ''Microb Ecol''. 2024 Feb 17; '''87''' (1):44
Transcriptomics Provide Insights into the Photoperiodic Regulation of Reproductive Diapause in the Green Lacewing, Chrysoperla nipponensis (Okamoto) (Neuroptera: Chrysopidae). Description: Liu, Shaoye, et al. Transcriptomics Provide Insights into the Photoperiodic Regulation of Reproductive Diapause in the Green Lacewing, Chrysoperla nipponensis (Okamoto) (Neuroptera: Chrysopidae). ''Insects''. 2024 Feb 17; '''15''' (2):
Unveiling the microbial communities and metabolic pathways of Keem, a traditional starter culture, through whole-genome sequencing. Description: Rana, Babita, et al. Unveiling the microbial communities and metabolic pathways of Keem, a traditional starter culture, through whole-genome sequencing. ''Sci Rep''. 2024 Feb 18; '''14''' (1):4031
Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. Description: Fadeev, Eduard, et al. Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter. ''mSystems''. 2024 Feb 20; '''9''' (2):e0126423
Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon. Description: Brealey, Jaelle C, et al. Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon. ''mSystems''. 2024 Feb 20; '''9''' (2):e0104323
Integrated meta-omics reveals the regulatory landscape involved in lipid metabolism between pig breeds. Description: Sun, Jiajie, et al. Integrated meta-omics reveals the regulatory landscape involved in lipid metabolism between pig breeds. ''Microbiome''. 2024 Feb 20; '''12''' (1):33
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction. Description: Bian, Gaorui, et al. Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction. ''mSystems''. 2024 Feb 20; '''9''' (2):e0103423
Virus-prokaryote infection pairs associated with prokaryotic production in a freshwater lake. Description: Shen, Shang, et al. Virus-prokaryote infection pairs associated with prokaryotic production in a freshwater lake. ''mSystems''. 2024 Feb 20; '''9''' (2):e0090623
Design, Synthesis, and Anti-Cancer Evaluation of Novel Water-Soluble Copper(I) Complexes Bearing Terpyridine and PTA Ligands. Description: Smolenski, Piotr, et al. Design, Synthesis, and Anti-Cancer Evaluation of Novel Water-Soluble Copper(I) Complexes Bearing Terpyridine and PTA Ligands. ''Molecules''. 2024 Feb 21; '''29''' (5):
Genetic and Phenotypic Characterization of Bacillus velezensis Strain BV379 for Human Probiotic Applications. Description: Brutscher, Laura M, et al. Genetic and Phenotypic Characterization of Bacillus velezensis Strain BV379 for Human Probiotic Applications. ''Microorganisms''. 2024 Feb 21; '''12''' (3):
Identification of a novel and plant height-independent QTL for coleoptile length in barley and validation of its effect using near isogenic lines. Description: Gao, Shang, et al. Identification of a novel and plant height-independent QTL for coleoptile length in barley and validation of its effect using near isogenic lines. ''Theor Appl Genet''. 2024 Feb 21; '''137''' (3):53
Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen. Description: Liu, Na, et al. Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen. ''Appl Environ Microbiol''. 2024 Feb 21; '''90''' (2):e0091423
Co-evolution of gene transfer agents and their alphaproteobacterial hosts. Description: Kogay, Roman, et al. Co-evolution of gene transfer agents and their alphaproteobacterial hosts. ''J Bacteriol''. 2024 Feb 22; '''206''' (2):e0039823
Mechanism of 2'-fucosyllactose degradation by human-associated Akkermansia. Description: Padilla, Loren, et al. Mechanism of 2'-fucosyllactose degradation by human-associated Akkermansia. ''J Bacteriol''. 2024 Feb 22; '''206''' (2):e0033423
Novel functional insights into the microbiome inhabiting marine plastic debris: critical considerations to counteract the challenges of thin biofilms using multi-omics and comparative metaproteomics. Description: Messer, Lauren F, et al. Novel functional insights into the microbiome inhabiting marine plastic debris: critical considerations to counteract the challenges of thin biofilms using multi-omics and comparative metaproteomics. ''Microbiome''. 2024 Feb 22; '''12''' (1):36
Chromosome-level genome assembly of the silver pomfret Pampus argenteus. Description: Wei, Jiehong, et al. Chromosome-level genome assembly of the silver pomfret Pampus argenteus. ''Sci Data''. 2024 Feb 23; '''11''' (1):234
Gut microbiota predicts severity and reveals novel metabolic signatures in acute pancreatitis. Description: Ammer-Herrmenau, Christoph, et al. Gut microbiota predicts severity and reveals novel metabolic signatures in acute pancreatitis. ''Gut''. 2024 Feb 23; '''73''' (3):485-495
Multi-omics reveal mechanisms of high enteral starch diet mediated colonic dysbiosis via microbiome-host interactions in young ruminant. Description: Jin, Chunjia, et al. Multi-omics reveal mechanisms of high enteral starch diet mediated colonic dysbiosis via microbiome-host interactions in young ruminant. ''Microbiome''. 2024 Feb 24; '''12''' (1):38
Direct Population of Triplet States for Efficient Organic Afterglow through the Intra/Intermolecular Heavy-Atom Effect. Description: Yuan, Jie, et al. Direct Population of Triplet States for Efficient Organic Afterglow through the Intra/Intermolecular Heavy-Atom Effect. ''Molecules''. 2024 Feb 26; '''29''' (5):
Fine Tuning the Hydrophobicity of a New Three-Dimensional Cu(2+) MOF through Single Crystal Coordinating Ligand Exchange Transformations. Description: Panagiotou, Nikos, et al. Fine Tuning the Hydrophobicity of a New Three-Dimensional Cu(2+) MOF through Single Crystal Coordinating Ligand Exchange Transformations. ''Inorg Chem''. 2024 Feb 26; '''63''' (8):3824-3834
Metabolic Dysfunction Associated Liver Disease in Patients Undergoing Coronary Computed Tomography Angiography. Description: Orzan, Rares Ilie, et al. Metabolic Dysfunction Associated Liver Disease in Patients Undergoing Coronary Computed Tomography Angiography. ''J Cardiovasc Dev Dis''. 2024 Feb 26; '''11''' (3):
Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. Description: Li, Xin, et al. Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. ''Microbiome''. 2024 Feb 26; '''12''' (1):39
Diversity of astroviruses in wild animals in Yunnan province, China. Description: Huang, Xingyu, et al. Diversity of astroviruses in wild animals in Yunnan province, China. ''Virol J''. 2024 Feb 27; '''21''' (1):51
Oral supplementation of gut microbial metabolite indole-3-acetate alleviates diet-induced steatosis and inflammation in mice. Description: Ding, Yufang, et al. Oral supplementation of gut microbial metabolite indole-3-acetate alleviates diet-induced steatosis and inflammation in mice. ''Elife''. 2024 Feb 27; '''12''':
Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection. Description: Nooij, Sam, et al. Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection. ''Genome Med''. 2024 Feb 28; '''16''' (1):37
Transcriptomic Responses to Koi Herpesvirus in Isolated Blood Leukocytes from Infected Common Carp. Description: Cano, Irene, et al. Transcriptomic Responses to Koi Herpesvirus in Isolated Blood Leukocytes from Infected Common Carp. ''Viruses''. 2024 Feb 28; '''16''' (3):
A metagenomic catalog of the early-life human gut virome. Description: Zeng, Shuqin, et al. A metagenomic catalog of the early-life human gut virome. ''Nat Commun''. 2024 Feb 29; '''15''' (1):1864
Evaluating the effect of pore size for 3d-printed bone scaffolds. Description: Seehanam, Saran, et al. Evaluating the effect of pore size for 3d-printed bone scaffolds. ''Heliyon''. 2024 Feb 29; '''10''' (4):e26005
Viral potential to modulate microbial methane metabolism varies by habitat. Description: Zhong, Zhi-Ping, et al. Viral potential to modulate microbial methane metabolism varies by habitat. ''Nat Commun''. 2024 Feb 29; '''15''' (1):1857
A Synthetic Microbiome Based on Dominant Microbes in Wild Rice Rhizosphere to Promote Sulfur Utilization. Description: Wang, Changji, et al. A Synthetic Microbiome Based on Dominant Microbes in Wild Rice Rhizosphere to Promote Sulfur Utilization. ''Rice (N Y)''. 2024 Mar 1; '''17''' (1):18
A toolbox for genetic manipulation in intestinal Clostridium symbiosum. Description: Yang, Pengjie, et al. A toolbox for genetic manipulation in intestinal Clostridium symbiosum. ''Synth Syst Biotechnol''. 2024 Mar; '''9''' (1):43-54
Cost-utility of real-time continuous glucose monitoring versus self-monitoring of blood glucose in people with insulin-treated Type II diabetes in France. Description: Alshannaq, Hamza, et al. Cost-utility of real-time continuous glucose monitoring versus self-monitoring of blood glucose in people with insulin-treated Type II diabetes in France. ''J Comp Eff Res''. 2024 Mar; '''13''' (3):e230174
Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. Description: Yu, Michael K, et al. Diverse plasmid systems and their ecology across human gut metagenomes revealed by PlasX and MobMess. ''Nat Microbiol''. 2024 Mar; '''9''' (3):830-847
Epidermal microorganisms contributed to the toxic mechanism of nZVI and TCEP in earthworms by robbing metal elements and nutrients. Description: Hou, Jie, et al. Epidermal microorganisms contributed to the toxic mechanism of nZVI and TCEP in earthworms by robbing metal elements and nutrients. ''Eco Environ Health''. 2024 Mar; '''3''' (1):80-88
Genome evolution and divergence in cis-regulatory architecture is associated with condition-responsive development in horned dung beetles. Description: Davidson, Phillip L, et al. Genome evolution and divergence in cis-regulatory architecture is associated with condition-responsive development in horned dung beetles. ''PLoS Genet''. 2024 Mar; '''20''' (3):e1011165
PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution. Description: Roces, Victor, et al. PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution. ''Mol Biol Evol''. 2024 Mar 1; '''41''' (3):
Regulatory mechanisms of dopamine metabolism in a marine Meyerozyma guilliermondii GXDK6 under NaCl stress as revealed by integrative multi-omics analysis. Description: Sun, Huijie, et al. Regulatory mechanisms of dopamine metabolism in a marine Meyerozyma guilliermondii GXDK6 under NaCl stress as revealed by integrative multi-omics analysis. ''Synth Syst Biotechnol''. 2024 Mar; '''9''' (1):115-126
[Tc(NO)(Cp)(PPh(3))Cl] and [Tc(NO)(Cp)(PPh(3))(NCCH(3))](PF(6)), and Their Reactions with Pyridine and Chalcogen Donors. Description: Ernst, Moritz Johannes, et al. [Tc(NO)(Cp)(PPh(3))Cl] and [Tc(NO)(Cp)(PPh(3))(NCCH(3))](PF(6)), and Their Reactions with Pyridine and Chalcogen Donors. ''Molecules''. 2024 Mar 1; '''29''' (5):
Unveiling genome plasticity and a novel phage in Mycoplasma felis: Genomic investigations of four feline isolates. Description: Klose, Sara M, et al. Unveiling genome plasticity and a novel phage in Mycoplasma felis: Genomic investigations of four feline isolates. ''Microb Genom''. 2024 Mar; '''10''' (3):
Chromosomal Inversions and the Demography of Speciation in Drosophila montana and Drosophila flavomontana. Description: Poikela, Noora, et al. Chromosomal Inversions and the Demography of Speciation in Drosophila montana and Drosophila flavomontana. ''Genome Biol Evol''. 2024 Mar 2; '''16''' (3):
Deciphering Microbial Communities and Distinct Metabolic Pathways in the Tangyin Hydrothermal Fields of Okinawa Trough through Metagenomic and Genomic Analyses. Description: Li, Jiake, et al. Deciphering Microbial Communities and Distinct Metabolic Pathways in the Tangyin Hydrothermal Fields of Okinawa Trough through Metagenomic and Genomic Analyses. ''Microorganisms''. 2024 Mar 4; '''12''' (3):
Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. Description: Hauswedell, Hannes, et al. Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. ''Bioinformatics''. 2024 Mar 4; '''40''' (3):
Chromosome-scale genome assemblies of Himalopsyche anomala and Eubasilissa splendida (Insecta: Trichoptera). Description: Ge, Xinyu, et al. Chromosome-scale genome assemblies of Himalopsyche anomala and Eubasilissa splendida (Insecta: Trichoptera). ''Sci Data''. 2024 Mar 5; '''11''' (1):267
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. Description: Abdulkadir, Nafi'u, et al. Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. ''Microbiol Spectr''. 2024 Mar 5; '''12''' (3):e0291823
Global diversity of enterococci and description of 18 previously unknown species. Description: Schwartzman, Julia A, et al. Global diversity of enterococci and description of 18 previously unknown species. ''Proc Natl Acad Sci U S A''. 2024 Mar 5; '''121''' (10):e2310852121
6-Aryl-4-cycloamino-1,3,5-triazine-2-amines: synthesis, antileukemic activity, and 3D-QSAR modelling. Description: Bin Shahari, Muhammad Syafiq, et al. 6-Aryl-4-cycloamino-1,3,5-triazine-2-amines: synthesis, antileukemic activity, and 3D-QSAR modelling. ''RSC Adv''. 2024 Mar 6; '''14''' (12):8264-8282
Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays. Description: Skojec, Chelsea, et al. Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays. ''G3 (Bethesda)''. 2024 Mar 6; '''14''' (3):
Bactericera cockerelli Picorna-like Virus and Three New Viruses Found Circulating in Populations of Potato/Tomato Psyllids (Bactericera cockerelli). Description: Dahan, Jennifer, et al. Bactericera cockerelli Picorna-like Virus and Three New Viruses Found Circulating in Populations of Potato/Tomato Psyllids (Bactericera cockerelli). ''Viruses''. 2024 Mar 8; '''16''' (3):
Strain heterogeneity in a non-pathogenic fungus highlights factors contributing to virulence. Description: Rinker, David C, et al. Strain heterogeneity in a non-pathogenic fungus highlights factors contributing to virulence. ''bioRxiv''. 2024 Mar 10;
Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm reactor. Description: Suarez, Carolina, et al. Biofilm colonization and succession in a full-scale partial nitritation-anammox moving bed biofilm reactor. ''Microbiome''. 2024 Mar 12; '''12''' (1):51
Rhizoctonia solani disease suppression: addition of keratin-rich soil amendment leads to functional shifts in soil microbial communities. Description: Russ, Lina, et al. Rhizoctonia solani disease suppression: addition of keratin-rich soil amendment leads to functional shifts in soil microbial communities. ''FEMS Microbiol Ecol''. 2024 Mar 12; '''100''' (4):
Rubisco is evolving for improved catalytic efficiency and CO(2) assimilation in plants. Description: Bouvier, Jacques W, et al. Rubisco is evolving for improved catalytic efficiency and CO(2) assimilation in plants. ''Proc Natl Acad Sci U S A''. 2024 Mar 12; '''121''' (11):e2321050121
Ammonia stress-induced heat shock factor 1 enhances white spot syndrome virus infection by targeting the interferon-like system in shrimp. Description: Wang, Xin-Xin, et al. Ammonia stress-induced heat shock factor 1 enhances white spot syndrome virus infection by targeting the interferon-like system in shrimp. ''mBio''. 2024 Mar 13; '''15''' (3):e0313623
Comparative genomics of four lactic acid bacteria identified with Vitek MS (MALDI-TOF) and whole-genome sequencing. Description: Kahraman-Ilikkan, Ozge. Comparative genomics of four lactic acid bacteria identified with Vitek MS (MALDI-TOF) and whole-genome sequencing. ''Mol Genet Genomics''. 2024 Mar 13; '''299''' (1):31
Critical role of growth medium for detecting drug interactions in Gram-negative bacteria that model in vivo responses. Description: Davis, Kathleen P, et al. Critical role of growth medium for detecting drug interactions in Gram-negative bacteria that model in vivo responses. ''mBio''. 2024 Mar 13; '''15''' (3):e0015924
Impact of rumen microbiome on cattle carcass traits. Description: Sato, Yoshiaki, et al. Impact of rumen microbiome on cattle carcass traits. ''Sci Rep''. 2024 Mar 13; '''14''' (1):6064
Intestinal dual-specificity phosphatase 6 regulates the cold-induced gut microbiota remodeling to promote white adipose browning. Description: Chen, Pei-Chen, et al. Intestinal dual-specificity phosphatase 6 regulates the cold-induced gut microbiota remodeling to promote white adipose browning. ''NPJ Biofilms Microbiomes''. 2024 Mar 13; '''10''' (1):22
Learnt representations of proteins can be used for accurate prediction of small molecule binding sites on experimentally determined and predicted protein structures. Description: Carbery, Anna, et al. Learnt representations of proteins can be used for accurate prediction of small molecule binding sites on experimentally determined and predicted protein structures. ''J Cheminform''. 2024 Mar 14; '''16''' (1):32
Inoculum and pH effects on ammonium removal and microbial community dynamics in aquaponics systems. Description: Derikvand, Peyman, et al. Inoculum and pH effects on ammonium removal and microbial community dynamics in aquaponics systems. ''iScience''. 2024 Mar 15; '''27''' (3):109073
Transcriptomic profiling of Poa pratensis L. under treatment of various phytohormones. Description: Meng, Chen, et al. Transcriptomic profiling of Poa pratensis L. under treatment of various phytohormones. ''Sci Data''. 2024 Mar 15; '''11''' (1):297
Uncovering the subtype-specific disease module and the development of drug response prediction models for glioma. Description: Munquad, Sana, et al. Uncovering the subtype-specific disease module and the development of drug response prediction models for glioma. ''Heliyon''. 2024 Mar 15; '''10''' (5):e27190
Identification of Viruses in Molossus Bats from the Brazilian Amazon: A Descriptive Metagenomic Analysis. Description: Pinheiro, Lucas Rafael Santana, et al. Identification of Viruses in Molossus Bats from the Brazilian Amazon: A Descriptive Metagenomic Analysis. ''Microorganisms''. 2024 Mar 16; '''12''' (3):
Comparative overview of multi-shell diffusion MRI models to characterize the microstructure of multiple sclerosis lesions and periplaques. Description: Vanden Bulcke, Colin, et al. Comparative overview of multi-shell diffusion MRI models to characterize the microstructure of multiple sclerosis lesions and periplaques. ''Neuroimage Clin''. 2024 Mar 18; '''42''': 103593
Encoding ordered structural complexity to covalent organic frameworks. Description: Wei, Lei, et al. Encoding ordered structural complexity to covalent organic frameworks. ''Nat Commun''. 2024 Mar 18; '''15''' (1):2411
Genetic mechanism of body size variation in groupers: Insights from phylotranscriptomics. Description: Zhang, Wei-Wei, et al. Genetic mechanism of body size variation in groupers: Insights from phylotranscriptomics. ''Zool Res''. 2024 Mar 18; '''45''' (2):314-328
Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle. Description: Zhong, Juntao, et al. Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle. ''mSystems''. 2024 Mar 19; '''9''' (3):e0006724
Metagenomic Detection and Genetic Characterization of Human Sapoviruses among Children with Acute Flaccid Paralysis in Nigeria. Description: George, Uwem Etop, et al. Metagenomic Detection and Genetic Characterization of Human Sapoviruses among Children with Acute Flaccid Paralysis in Nigeria. ''Pathogens''. 2024 Mar 19; '''13''' (3):
Microbial and metabolic profiles unveil mutualistic microbe-microbe interaction in obesity-related colorectal cancer. Description: Li, Jinming, et al. Microbial and metabolic profiles unveil mutualistic microbe-microbe interaction in obesity-related colorectal cancer. ''Cell Rep Med''. 2024 Mar 19; '''5''' (3):101429
Multidrug resistance plasmids commonly reprogram the expression of metabolic genes in Escherichia coli. Description: Hall, Rebecca J, et al. Multidrug resistance plasmids commonly reprogram the expression of metabolic genes in Escherichia coli. ''mSystems''. 2024 Mar 19; '''9''' (3):e0119323
The Home Environment Is a Reservoir for Methicillin-Resistant Coagulase-Negative Staphylococci and Mammaliicocci. Description: Roken, Mari, et al. The Home Environment Is a Reservoir for Methicillin-Resistant Coagulase-Negative Staphylococci and Mammaliicocci. ''Antibiotics (Basel)''. 2024 Mar 19; '''13''' (3):
Dynamic DNA N (6)-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus. Description: Liu, Yongqiang, et al. Dynamic DNA N (6)-adenine methylation (6mA) governs the encystment process, showcased in the unicellular eukaryote Pseudocohnilembus persalinus. ''Genome Res''. 2024 Mar 20; '''34''' (2):256-271
Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. Description: Wu, Zhikun, et al. Human pangenome analysis of sequences missing from the reference genome reveals their widespread evolutionary, phenotypic, and functional roles. ''Nucleic Acids Res''. 2024 Mar 21; '''52''' (5):2212-2230
Metagenomic Insight into the Effect of Probiotics on Nitrogen Cycle in the Coilia nasus Aquaculture Pond Water. Description: Mang, Qi, et al. Metagenomic Insight into the Effect of Probiotics on Nitrogen Cycle in the Coilia nasus Aquaculture Pond Water. ''Microorganisms''. 2024 Mar 21; '''12''' (3):
Soil Application of Bacillus subtilis Regulates Flavonoid and Alkaloids Biosynthesis in Mulberry Leaves. Description: Yu, Yanfang, et al. Soil Application of Bacillus subtilis Regulates Flavonoid and Alkaloids Biosynthesis in Mulberry Leaves. ''Metabolites''. 2024 Mar 23; '''14''' (4):
Gold(I) and Silver(I) Complexes Containing Hybrid Sulfonamide/Thiourea Ligands as Potential Leishmanicidal Agents. Description: Borges, Alice P, et al. Gold(I) and Silver(I) Complexes Containing Hybrid Sulfonamide/Thiourea Ligands as Potential Leishmanicidal Agents. ''Pharmaceutics''. 2024 Mar 25; '''16''' (4):
A near-complete genome assembly of Monochamus alternatus a major vector beetle of pinewood nematode. Description: Xing, Longsheng, et al. A near-complete genome assembly of Monochamus alternatus a major vector beetle of pinewood nematode. ''Sci Data''. 2024 Mar 26; '''11''' (1):312
Impact of Incorporating Shiitake Mushrooms (Lentinula edodes) on Microbial Community and Flavor Volatiles in Traditional Jiuqu. Description: Geng, Jingzhang, et al. Impact of Incorporating Shiitake Mushrooms (Lentinula edodes) on Microbial Community and Flavor Volatiles in Traditional Jiuqu. ''Foods''. 2024 Mar 26; '''13''' (7):
Widespread Horizontal Gene Transfer Among Animal Viruses. Description: Buck, Christopher B, et al. Widespread Horizontal Gene Transfer Among Animal Viruses. ''bioRxiv''. 2024 Mar 26;
Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. Description: Villena-Alemany, Cristian, et al. Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. ''Microbiome''. 2024 Mar 27; '''12''' (1):65
Host and geography impact virus diversity in New Zealand's longfin and shortfin eels. Description: Waller, Stephanie J, et al. Host and geography impact virus diversity in New Zealand's longfin and shortfin eels. ''Arch Virol''. 2024 Mar 28; '''169''' (4):85
The beneficial impacts of nano-propolis liposomes as an anti-stressor agent on broiler chickens kept under cyclic heat stress. Description: Eldiasty, Jayda G, et al. The beneficial impacts of nano-propolis liposomes as an anti-stressor agent on broiler chickens kept under cyclic heat stress. ''Poult Sci''. 2024 Mar 28; '''103''' (6):103695
A Metagenomic Investigation of Potential Health Risks and Element Cycling Functions of Bacteria and Viruses in Wastewater Treatment Plants. Description: Zhao, Haozhe, et al. A Metagenomic Investigation of Potential Health Risks and Element Cycling Functions of Bacteria and Viruses in Wastewater Treatment Plants. ''Viruses''. 2024 Mar 29; '''16''' (4):
Nuclear Receptor FTZ-F1 Controls Locust Molt by Regulating the Molting Process of Locusta migratoria. Description: Zhang, Yichao, et al. Nuclear Receptor FTZ-F1 Controls Locust Molt by Regulating the Molting Process of Locusta migratoria. ''Insects''. 2024 Mar 29; '''15''' (4):
Coconut rhinoceros beetle digestive symbiosis with potential plant cell wall degrading microbes. Description: Han, Chiao-Jung, et al. Coconut rhinoceros beetle digestive symbiosis with potential plant cell wall degrading microbes. ''NPJ Biofilms Microbiomes''. 2024 Mar 30; '''10''' (1):34
A broad host phage, CP6, for combating multidrug-resistant Campylobacter prevalent in poultry meat. Description: Zhang, Xiaoyan, et al. A broad host phage, CP6, for combating multidrug-resistant Campylobacter prevalent in poultry meat. ''Poult Sci''. 2024 Apr; '''103''' (4):103548
Accessory genes define species-specific routes to antibiotic resistance. Description: Dillon, Lucy, et al. Accessory genes define species-specific routes to antibiotic resistance. ''Life Sci Alliance''. 2024 Apr; '''7''' (4):
Bovine neutrophils kill the sexually-transmitted parasite Tritrichomonas foetus using trogocytosis. Description: Najera, Jonathan, et al. Bovine neutrophils kill the sexually-transmitted parasite Tritrichomonas foetus using trogocytosis. ''Vet Res Commun''. 2024 Apr; '''48''' (2):865-875
Chromosome-scale assembly of the streamlined picoeukaryote Picochlorum sp. SENEW3 genome reveals Rabl-like chromatin structure and potential for C(4) photosynthesis. Description: da Roza, Patrick A, et al. Chromosome-scale assembly of the streamlined picoeukaryote Picochlorum sp. SENEW3 genome reveals Rabl-like chromatin structure and potential for C(4) photosynthesis. ''Microb Genom''. 2024 Apr; '''10''' (4):
Chromosome-scale genome, together with transcriptome and metabolome, provides insights into the evolution and anthocyanin biosynthesis of Rubus rosaefolius Sm. (Rosaceae). Description: Wang, Yunsheng, et al. Chromosome-scale genome, together with transcriptome and metabolome, provides insights into the evolution and anthocyanin biosynthesis of Rubus rosaefolius Sm. (Rosaceae). ''Hortic Res''. 2024 Apr; '''11''' (4):uhae064
Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes. Description: Vences, Miguel, et al. Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes. ''Data Brief''. 2024 Apr; '''53''': 110070
Graft incompatibility between pepper and tomato can be attributed to genetic incompatibility between diverged immune systems. Description: Thomas, Hannah Rae, et al. Graft incompatibility between pepper and tomato can be attributed to genetic incompatibility between diverged immune systems. ''bioRxiv''. 2024 Apr 1;
Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification. Description: Tian, Xue-Chan, et al. Plant-LncPipe: a computational pipeline providing significant improvement in plant lncRNA identification. ''Hortic Res''. 2024 Apr; '''11''' (4):uhae041
Relationships between diet and gut microbiome in an Italian and Dutch cohort: does the dietary protein to fiber ratio play a role? Description: Tagliamonte, Silvia, et al. Relationships between diet and gut microbiome in an Italian and Dutch cohort: does the dietary protein to fiber ratio play a role? ''Eur J Nutr''. 2024 Apr; '''63''' (3):741-750
Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals. Description: Boston, Rebecca H, et al. Stability of gut microbiome after COVID-19 vaccination in healthy and immuno-compromised individuals. ''Life Sci Alliance''. 2024 Apr; '''7''' (4):
Viromes of Haemaphysalis longicornis reveal different viral abundance and diversity in free and engorged ticks. Description: Xiao, Jian, et al. Viromes of Haemaphysalis longicornis reveal different viral abundance and diversity in free and engorged ticks. ''Virol Sin''. 2024 Apr; '''39''' (2):194-204
Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May-Wigner Theory. Description: Xu, Shaohua, et al. Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May-Wigner Theory. ''Mol Biol Evol''. 2024 Apr 2; '''41''' (4):
Annotation of 2,507 Saccharomyces cerevisiae genomes. Description: Wang, Meng, et al. Annotation of 2,507 Saccharomyces cerevisiae genomes. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0358223
A proteomics study of rheumatoid arthritis patients on etanercept identifies putative biomarkers associated with clinical outcome measures. Description: Ling, Stephanie F, et al. A proteomics study of rheumatoid arthritis patients on etanercept identifies putative biomarkers associated with clinical outcome measures. ''Rheumatology (Oxford)''. 2024 Apr 2; '''63''' (4):1015-1021
Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis. Description: De Jode, Aurelien, et al. Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Evolutionary insights into the emergence of virulent Leptospira spirochetes. Description: Giraud-Gatineau, Alexandre, et al. Evolutionary insights into the emergence of virulent Leptospira spirochetes. ''bioRxiv''. 2024 Apr 2;
Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas. Description: Pena, Michelle M, et al. Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages. Description: Liang, Jie-Liang, et al. Hidden diversity and potential ecological function of phosphorus acquisition genes in widespread terrestrial bacteriophages. ''Nat Commun''. 2024 Apr 2; '''15''' (1):2827
Phased Assembly of Neo-Sex Chromosomes Reveals Extensive Y Degeneration and Rapid Genome Evolution in Rumex hastatulus. Description: Sacchi, Bianca, et al. Phased Assembly of Neo-Sex Chromosomes Reveals Extensive Y Degeneration and Rapid Genome Evolution in Rumex hastatulus. ''Mol Biol Evol''. 2024 Apr 2; '''41''' (4):
Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus. Description: Steenwyk, Jacob L, et al. Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0398023
Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota. Description: Odelgard, Anna, et al. Phylogeny and Expansion of Serine/Threonine Kinases in Phagocytotic Bacteria in the Phylum Planctomycetota. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Retention of an Endosymbiont for the Production of a Single Molecule. Description: Garber, Arkadiy I, et al. Retention of an Endosymbiont for the Production of a Single Molecule. ''Genome Biol Evol''. 2024 Apr 2; '''16''' (4):
Screening potential biomarkers associated with insulin resistance in high-fat diet-fed mice by integrating metagenomics and untargeted metabolomics. Description: Zhou, Yunyan, et al. Screening potential biomarkers associated with insulin resistance in high-fat diet-fed mice by integrating metagenomics and untargeted metabolomics. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0409423
Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs. Description: Brodersen, Kasper Elgetti, et al. Seagrass-mediated rhizosphere redox gradients are linked with ammonium accumulation driven by diazotrophs. ''Microbiol Spectr''. 2024 Apr 2; '''12''' (4):e0333523
Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals. Description: Gaudry, Michael J, et al. Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals. ''Mol Biol Evol''. 2024 Apr 2; '''41''' (4):
Deciphering the Genomic Landscape and Virulence Mechanisms of the Wheat Powdery Mildew Pathogen Blumeria graminis f. sp. tritici Wtn1: Insights from Integrated Genome Assembly and Conidial Transcriptomics. Description: Nallathambi, Perumal, et al. Deciphering the Genomic Landscape and Virulence Mechanisms of the Wheat Powdery Mildew Pathogen Blumeria graminis f. sp. tritici Wtn1: Insights from Integrated Genome Assembly and Conidial Transcriptomics. ''J Fungi (Basel)''. 2024 Apr 3; '''10''' (4):
Genomic insights into the evolution and adaptation of secondary metabolite gene clusters in fungicolous species Cladobotryum mycophilum ATHUM6906. Description: Christinaki, Anastasia C, et al. Genomic insights into the evolution and adaptation of secondary metabolite gene clusters in fungicolous species Cladobotryum mycophilum ATHUM6906. ''G3 (Bethesda)''. 2024 Apr 3; '''14''' (4):
Genomic language model predicts protein co-regulation and function. Description: Hwang, Yunha, et al. Genomic language model predicts protein co-regulation and function. ''Nat Commun''. 2024 Apr 3; '''15''' (1):2880
Inter-phylum circulation of a beta-lactamase-encoding gene: a rare but observable event. Description: Gschwind, Remi, et al. Inter-phylum circulation of a beta-lactamase-encoding gene: a rare but observable event. ''Antimicrob Agents Chemother''. 2024 Apr 3; '''68''' (4):e0145923
A chromosome-level genome assembly of the spider mite Tetranychus piercei McGregor. Description: Chen, Lei, et al. A chromosome-level genome assembly of the spider mite Tetranychus piercei McGregor. ''Sci Data''. 2024 Apr 5; '''11''' (1):340
Genomic characterization of a novel Hepatovirus identified in Maranhao state, Brazil. Description: de Moraes Pires, Walna Micaelle, et al. Genomic characterization of a novel Hepatovirus identified in Maranhao state, Brazil. ''Sci Rep''. 2024 Apr 5; '''14''' (1):7981
Longitudinal multi-omics analysis uncovers the altered landscape of gut microbiota and plasma metabolome in response to high altitude. Description: Han, Yang, et al. Longitudinal multi-omics analysis uncovers the altered landscape of gut microbiota and plasma metabolome in response to high altitude. ''Microbiome''. 2024 Apr 5; '''12''' (1):70
The massive 340 megabase genome of Anisogramma anomala, a biotrophic ascomycete that causes eastern filbert blight of hazelnut. Description: Cohen, Alanna B, et al. The massive 340 megabase genome of Anisogramma anomala, a biotrophic ascomycete that causes eastern filbert blight of hazelnut. ''BMC Genomics''. 2024 Apr 5; '''25''' (1):347
Emergence and genomic chion of Proteus mirabilis harboring bla(NDM-1) in Korean companion dogs. Description: Kyung, Su Min, et al. Emergence and genomic chion of Proteus mirabilis harboring bla(NDM-1) in Korean companion dogs. ''Vet Res''. 2024 Apr 9; '''55''' (1):50
Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Description: Felipe Benites, L, et al. Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. ''Commun Biol''. 2024 Apr 9; '''7''' (1):312
Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants. Description: Feng, Shuyan, et al. Large-scale analysis of the ARF and Aux/IAA gene families in 406 horticultural and other plants. ''Mol Hortic''. 2024 Apr 9; '''4''' (1):13
Alternations in the human skin, gut and vaginal microbiomes in perimenopausal or postmenopausal Vulvar lichen sclerosus. Description: Ma, Xiaolei, et al. Alternations in the human skin, gut and vaginal microbiomes in perimenopausal or postmenopausal Vulvar lichen sclerosus. ''Sci Rep''. 2024 Apr 10; '''14''' (1):8429
LED-induced Ru-photoredox Pd-catalyzed C-H arylation of (6-phenylpyridin-2-yl)pyrimidines and heteroaryl counterparts. Description: Antoniou, Ioakeim M, et al. LED-induced Ru-photoredox Pd-catalyzed C-H arylation of (6-phenylpyridin-2-yl)pyrimidines and heteroaryl counterparts. ''RSC Adv''. 2024 Apr 10; '''14''' (17):12179-12191
Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation. Description: Wang, Daxi, et al. Substantial viral diversity in bats and rodents from East Africa: insights into evolution, recombination, and cocirculation. ''Microbiome''. 2024 Apr 10; '''12''' (1):72
Rationally designed probiotics prevent shrimp white feces syndrome via the probiotics-gut microbiome-immunity axis. Description: Sha, Haonan, et al. Rationally designed probiotics prevent shrimp white feces syndrome via the probiotics-gut microbiome-immunity axis. ''NPJ Biofilms Microbiomes''. 2024 Apr 11; '''10''' (1):40
Comparative Analysis of Viromes Identified in Multiple Macrofungi. Description: Zhou, Kang, et al. Comparative Analysis of Viromes Identified in Multiple Macrofungi. ''Viruses''. 2024 Apr 12; '''16''' (4):
The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. Description: Gomes-Dos-Santos, Andre, et al. The transcriptome assembly of the European freshwater mussel Unio elongatulus C. Pfeiffer, 1825. ''Sci Data''. 2024 Apr 12; '''11''' (1):377
Developmental Dynamics of the Gut Virome in Tibetan Pigs at High Altitude: A Metagenomic Perspective across Age Groups. Description: Luo, Runbo, et al. Developmental Dynamics of the Gut Virome in Tibetan Pigs at High Altitude: A Metagenomic Perspective across Age Groups. ''Viruses''. 2024 Apr 14; '''16''' (4):
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. Description: Wu, Ling-Yi, et al. Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes. ''Genome Biol''. 2024 Apr 15; '''25''' (1):97
Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments. Description: Yu, Meishun, et al. Diversity and potential host-interactions of viruses inhabiting deep-sea seamount sediments. ''Nat Commun''. 2024 Apr 15; '''15''' (1):3228
Integrated transcriptomic and metabolomic analysis reveals the regulation mechanism of early bolting and flowering in two cultivars of Angelica sinensis. Description: Zhu, Chenghao, et al. Integrated transcriptomic and metabolomic analysis reveals the regulation mechanism of early bolting and flowering in two cultivars of Angelica sinensis. ''Heliyon''. 2024 Apr 15; '''10''' (7):e28636
Transcriptomic and Metatranscriptomic Analyses Provide New Insights into the Response of the Pea Aphid Acyrthosiphon pisum (Hemiptera: Aphididae) to Acetamiprid. Description: Cai, Zhiyan, et al. Transcriptomic and Metatranscriptomic Analyses Provide New Insights into the Response of the Pea Aphid Acyrthosiphon pisum (Hemiptera: Aphididae) to Acetamiprid. ''Insects''. 2024 Apr 15; '''15''' (4):
Discovery and characterization of novel DNA viruses in Apis mellifera: expanding the honey bee virome through metagenomic analysis. Description: Kadleckova, Dominika, et al. Discovery and characterization of novel DNA viruses in Apis mellifera: expanding the honey bee virome through metagenomic analysis. ''mSystems''. 2024 Apr 16; '''9''' (4):e0008824
Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. Description: Yap, Min, et al. Seasonal and geographical impact on the Irish raw milk microbiota correlates with chemical composition and climatic variables. ''mSystems''. 2024 Apr 16; '''9''' (4):e0129023
A novel glycoside hydrolase 43-like enzyme from Clostridium boliviensis is an endo-xylanase and a candidate for xylooligosaccharide production from different xylan substrates. Description: Salas-Veizaga, Daniel Martin, et al. A novel glycoside hydrolase 43-like enzyme from Clostridium boliviensis is an endo-xylanase and a candidate for xylooligosaccharide production from different xylan substrates. ''Appl Environ Microbiol''. 2024 Apr 17; '''90''' (4):e0222323
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Description: Sulaiman, Jordy Evan, et al. Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. ''bioRxiv''. 2024 Apr 17;
Genetic barriers more than environmental associations explain Serratia marcescens population structure. Description: Sterzi, Lodovico, et al. Genetic barriers more than environmental associations explain Serratia marcescens population structure. ''Commun Biol''. 2024 Apr 17; '''7''' (1):468
Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages. Description: Zhang, Taikui, et al. Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages. ''Nat Commun''. 2024 Apr 17; '''15''' (1):3305
Transcriptome Analysis Provides Insights into Water Immersion Promoting the Decocooning of Osmia excavata Alfken. Description: Wang, Guiping, et al. Transcriptome Analysis Provides Insights into Water Immersion Promoting the Decocooning of Osmia excavata Alfken. ''Insects''. 2024 Apr 18; '''15''' (4):
Heterochronic shift in gene expression leads to ontogenetic morphological divergence between two closely related polyploid species. Description: Searle, Peter C, et al. Heterochronic shift in gene expression leads to ontogenetic morphological divergence between two closely related polyploid species. ''iScience''. 2024 Apr 19; '''27''' (4):109566
Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. Description: Hauptfeld, Ernestina, et al. Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes. ''Nat Commun''. 2024 Apr 20; '''15''' (1):3373
Chromosome-scale genome assembly and annotation of Cotoneaster glaucophyllus. Description: Meng, Kaikai, et al. Chromosome-scale genome assembly and annotation of Cotoneaster glaucophyllus. ''Sci Data''. 2024 Apr 22; '''11''' (1):406
The Comparative Genomics of Botryosphaeriaceae Suggests Gene Families of Botryosphaeria dothidea Related to Pathogenicity on Chinese Hickory Tree. Description: Liang, Dong, et al. The Comparative Genomics of Botryosphaeriaceae Suggests Gene Families of Botryosphaeria dothidea Related to Pathogenicity on Chinese Hickory Tree. ''J Fungi (Basel)''. 2024 Apr 22; '''10''' (4):
Anaerostipes hadrus, a butyrate-producing bacterium capable of metabolizing 5-fluorouracil. Description: Liu, Danping, et al. Anaerostipes hadrus, a butyrate-producing bacterium capable of metabolizing 5-fluorouracil. ''mSphere''. 2024 Apr 23; '''9''' (4):e0081623
Camel Milk Resistome in Kuwait: Genotypic and Phenotypic Characterization. Description: Rahmeh, Rita, et al. Camel Milk Resistome in Kuwait: Genotypic and Phenotypic Characterization. ''Antibiotics (Basel)''. 2024 Apr 23; '''13''' (5):
Catalytic specificity and crystal structure of cystathionine gamma-lyase from Pseudomonas aeruginosa. Description: Pedretti, Marco, et al. Catalytic specificity and crystal structure of cystathionine gamma-lyase from Pseudomonas aeruginosa. ''Sci Rep''. 2024 Apr 23; '''14''' (1):9364
Chromosome-level genome assembly of the predatory stink bug Arma custos. Description: Wang, Yuqin, et al. Chromosome-level genome assembly of the predatory stink bug Arma custos. ''Sci Data''. 2024 Apr 23; '''11''' (1):417
What one genus of showy moths can say about migration, adaptation, and wing pattern. Description: Zhang, Jing, et al. What one genus of showy moths can say about migration, adaptation, and wing pattern. ''Proc Natl Acad Sci U S A''. 2024 Apr 23; '''121''' (17):e2319726121
Bacteriophage EPP-1, a potential antibiotic alternative for controlling edwardsiellosis caused by Edwardsiella piscicida while mitigating drug-resistant gene dissemination. Description: Han, Ganghua, et al. Bacteriophage EPP-1, a potential antibiotic alternative for controlling edwardsiellosis caused by Edwardsiella piscicida while mitigating drug-resistant gene dissemination. ''Sci Rep''. 2024 Apr 24; '''14''' (1):9399
Deciphering the Diversity in Bacterial Transporters That Salvage Queuosine Precursors. Description: Quaiyum, Samia, et al. Deciphering the Diversity in Bacterial Transporters That Salvage Queuosine Precursors. ''Epigenomes''. 2024 Apr 25; '''8''' (2):
Full-length transcriptome analysis of a bloom-forming dinoflagellate Prorocentrum shikokuense (Dinophyceae). Description: Pan, Xiaohui, et al. Full-length transcriptome analysis of a bloom-forming dinoflagellate Prorocentrum shikokuense (Dinophyceae). ''Sci Data''. 2024 Apr 25; '''11''' (1):430
Gut microbiota composition and metabolic characteristics in patients with Craniopharyngioma. Description: Liu, Chunhui, et al. Gut microbiota composition and metabolic characteristics in patients with Craniopharyngioma. ''BMC Cancer''. 2024 Apr 25; '''24''' (1):521
Improved mouse models of the small intestine microbiota using region-specific sampling from humans. Description: Culver, Rebecca N, et al. Improved mouse models of the small intestine microbiota using region-specific sampling from humans. ''bioRxiv''. 2024 Apr 25;
The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals. Description: Schnitzler, Christine E, et al. The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals. ''Genome Res''. 2024 Apr 25; '''34''' (3):498-513
Chromosome-level genome assembly of the pygmy grasshopper Eucriotettix oculatus (Orthoptera: Tetrigoidea). Description: Li, Ran, et al. Chromosome-level genome assembly of the pygmy grasshopper Eucriotettix oculatus (Orthoptera: Tetrigoidea). ''Sci Data''. 2024 Apr 26; '''11''' (1):431
Direct Degradation of Fresh and Dried Macroalgae by Agarivorans albus B2Z047. Description: Gong, Ya, et al. Direct Degradation of Fresh and Dried Macroalgae by Agarivorans albus B2Z047. ''Mar Drugs''. 2024 Apr 28; '''22''' (5):
Castration alters the ileum microbiota of Holstein bulls and promotes beef flavor compounds. Description: Shi, Jinping, et al. Castration alters the ileum microbiota of Holstein bulls and promotes beef flavor compounds. ''BMC Genomics''. 2024 Apr 29; '''25''' (1):426
Dithienylethene-Based Photoswitchable Phosphines for the Palladium-Catalyzed Stille Coupling Reaction. Description: Sherstiuk, Anastasiia, et al. Dithienylethene-Based Photoswitchable Phosphines for the Palladium-Catalyzed Stille Coupling Reaction. ''Inorg Chem''. 2024 Apr 29; '''63''' (17):7652-7664
Gut microbiome composition and metabolic activity in women with diverticulitis. Description: Ma, Wenjie, et al. Gut microbiome composition and metabolic activity in women with diverticulitis. ''Nat Commun''. 2024 Apr 29; '''15''' (1):3612
Land conversion to agriculture induces taxonomic homogenization of soil microbial communities globally. Description: Peng, Ziheng, et al. Land conversion to agriculture induces taxonomic homogenization of soil microbial communities globally. ''Nat Commun''. 2024 Apr 29; '''15''' (1):3624
NEAT1 inhibits the angiogenic activity of cerebral arterial endothelial cells by inducing the M1 polarization of microglia through the AMPK signaling pathway. Description: Chen, Ting, et al. NEAT1 inhibits the angiogenic activity of cerebral arterial endothelial cells by inducing the M1 polarization of microglia through the AMPK signaling pathway. ''Cell Mol Biol Lett''. 2024 Apr 29; '''29''' (1):62
Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora. Description: Rolando, J L, et al. Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora. ''Nat Commun''. 2024 Apr 29; '''15''' (1):3607
Effect of Stevioside (Stevia rebaudiana) on Entamoeba histolytica Trophozoites. Description: Ortega-Carballo, Karla Jocelyn, et al. Effect of Stevioside (Stevia rebaudiana) on Entamoeba histolytica Trophozoites. ''Pathogens''. 2024 Apr 30; '''13''' (5):
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. Description: Lian, Qichao, et al. A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. ''Nat Genet''. 2024 May; '''56''' (5):982-991
Discovery and genetic characterization of novel paramyxoviruses from small mammals in Hubei Province, Central China. Description: Xu, Jia-le, et al. Discovery and genetic characterization of novel paramyxoviruses from small mammals in Hubei Province, Central China. ''Microb Genom''. 2024 May; '''10''' (5):
Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success. Description: Chen, Lin, et al. Evolutionary divergence of subgenomes in common carp provides insights into speciation and allopolyploid success. ''Fundam Res''. 2024 May; '''4''' (3):589-602
Fungal-bacteria interactions provide shelter for bacteria in Caesarean section scar diverticulum. Description: Chen, Peigen, et al. Fungal-bacteria interactions provide shelter for bacteria in Caesarean section scar diverticulum. ''Elife''. 2024 May 1; '''12''':
Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting. Description: Sandell, Felix L, et al. Genomic basis of seed colour in quinoa inferred from variant patterns using extreme gradient boosting. ''Plant Biotechnol J''. 2024 May; '''22''' (5):1312-1324
Parvimonas micra can translocate from the subgingival sulcus of the human oral cavity to colorectal adenocarcinoma. Description: Conde-Perez, Kelly, et al. Parvimonas micra can translocate from the subgingival sulcus of the human oral cavity to colorectal adenocarcinoma. ''Mol Oncol''. 2024 May; '''18''' (5):1143-1173
Putative genome contamination has minimal impact on the GTDB taxonomy. Description: Mussig, Aaron J, et al. Putative genome contamination has minimal impact on the GTDB taxonomy. ''Microb Genom''. 2024 May; '''10''' (5):
Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy. Description: Zakharevich, Natalia V, et al. Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy. ''Life Sci Alliance''. 2024 May; '''7''' (5):
Winners vs. losers: Schistosoma mansoni intestinal and liver eggs exhibit striking differences in gene expression and immunogenicity. Description: Peterkova, Kristyna, et al. Winners vs. losers: Schistosoma mansoni intestinal and liver eggs exhibit striking differences in gene expression and immunogenicity. ''PLoS Pathog''. 2024 May; '''20''' (5):e1012268
Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data. Description: Tian, Qinzhong, et al. Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data. ''Genome Biol Evol''. 2024 May 2; '''16''' (5):
Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. Description: Zhao, Zihao, et al. Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes. ''Microbiol Spectr''. 2024 May 2; '''12''' (5):e0303623
Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa. Description: Fields, Peter D, et al. Genome Evolution and Introgression in the New Zealand mud Snails Potamopyrgus estuarinus and Potamopyrgus kaitunuparaoa. ''Genome Biol Evol''. 2024 May 2; '''16''' (5):
Sphingomonas clade and functional distribution with simulated climate change. Description: Sorouri, Bahareh, et al. Sphingomonas clade and functional distribution with simulated climate change. ''Microbiol Spectr''. 2024 May 2; '''12''' (5):e0023624
The Evolution and Characterization of the RNA Interference Pathways in Lophotrochozoa. Description: Formaggioni, Alessandro, et al. The Evolution and Characterization of the RNA Interference Pathways in Lophotrochozoa. ''Genome Biol Evol''. 2024 May 2; '''16''' (5):
Chromosome-level genome assembly of the threatened resource plant Cinnamomum chago. Description: Tao, Lidan, et al. Chromosome-level genome assembly of the threatened resource plant Cinnamomum chago. ''Sci Data''. 2024 May 3; '''11''' (1):447
Community dynamics and metagenomic analyses reveal Bacteroidota's role in widespread enzymatic Fucus vesiculosus cell wall degradation. Description: Macdonald, Jascha F H, et al. Community dynamics and metagenomic analyses reveal Bacteroidota's role in widespread enzymatic Fucus vesiculosus cell wall degradation. ''Sci Rep''. 2024 May 3; '''14''' (1):10237
Integrated phenotypic, transcriptomics and metabolomics: growth status and metabolite accumulation pattern of medicinal materials at different harvest periods of Astragalus Membranaceus Mongholicus. Description: Li, Xiaojie, et al. Integrated phenotypic, transcriptomics and metabolomics: growth status and metabolite accumulation pattern of medicinal materials at different harvest periods of Astragalus Membranaceus Mongholicus. ''BMC Plant Biol''. 2024 May 3; '''24''' (1):358
Genomic epidemiology reveals multiple mechanisms of linezolid resistance in clinical enterococci in China. Description: Wang, Ziran, et al. Genomic epidemiology reveals multiple mechanisms of linezolid resistance in clinical enterococci in China. ''Ann Clin Microbiol Antimicrob''. 2024 May 4; '''23''' (1):41
A high-quality chromosome-scale genome assembly of blood orange, an important pigmented sweet orange variety. Description: Yang, Lei, et al. A high-quality chromosome-scale genome assembly of blood orange, an important pigmented sweet orange variety. ''Sci Data''. 2024 May 6; '''11''' (1):460
Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation. Description: Liew, Kok Jun, et al. Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation. ''Environ Microbiome''. 2024 May 6; '''19''' (1):29
Whole genome sequence analysis of shallot virus X from India reveals it to be a natural recombinant with positive selection pressure. Description: Singh, Jyoti, et al. Whole genome sequence analysis of shallot virus X from India reveals it to be a natural recombinant with positive selection pressure. ''BMC Genom Data''. 2024 May 6; '''25''' (1):42
Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae. Description: Tominaga, Kento, et al. Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae. ''Proc Natl Acad Sci U S A''. 2024 May 7; '''121''' (19):e2317954121
Genomic insights into the cellular specialization of predation in raptorial protists. Description: Li, Zaihan, et al. Genomic insights into the cellular specialization of predation in raptorial protists. ''BMC Biol''. 2024 May 7; '''22''' (1):107
Metagenomic insights into the relationship between intestinal flora and residual feed intake of meat ducks. Description: Yang, Chunyan, et al. Metagenomic insights into the relationship between intestinal flora and residual feed intake of meat ducks. ''Poult Sci''. 2024 May 7; '''103''' (7):103836
Chromosomal-level genome assembly and annotation of the tropical sea cucumber Holothuria scabra. Description: Zhong, Shengping, et al. Chromosomal-level genome assembly and annotation of the tropical sea cucumber Holothuria scabra. ''Sci Data''. 2024 May 9; '''11''' (1):474
Integrated de novo transcriptome of Culex pipiens mosquito larvae as a resource for genetic control strategies. Description: Mastrantonio, Valentina, et al. Integrated de novo transcriptome of Culex pipiens mosquito larvae as a resource for genetic control strategies. ''Sci Data''. 2024 May 9; '''11''' (1):471
A chromosome-level genome assembly of an avivorous bat species (Nyctalus aviator). Description: Geng, Yang, et al. A chromosome-level genome assembly of an avivorous bat species (Nyctalus aviator). ''Sci Data''. 2024 May 10; '''11''' (1):480
Changes in Rhizosphere Soil Microorganisms and Metabolites during the Cultivation of Fritillaria cirrhosa. Description: Liu, Zhixiang, et al. Changes in Rhizosphere Soil Microorganisms and Metabolites during the Cultivation of Fritillaria cirrhosa. ''Biology (Basel)''. 2024 May 11; '''13''' (5):
Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops. Description: Chen, Jinwen, et al. Comparative transcriptomic analysis provides insights into the genetic networks regulating oil differential production in oil crops. ''BMC Biol''. 2024 May 13; '''22''' (1):110
High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development. Description: Shao, Lei, et al. High-quality genomes of Bombax ceiba and Ceiba pentandra provide insights into the evolution of Malvaceae species and differences in their natural fiber development. ''Plant Commun''. 2024 May 13; '''5''' (5):100832
Effects of dietary metabolizable energy level on hepatic lipid metabolism and cecal microbiota in aged laying hens. Description: Li, Anjian, et al. Effects of dietary metabolizable energy level on hepatic lipid metabolism and cecal microbiota in aged laying hens. ''Poult Sci''. 2024 May 15; '''103''' (7):103855
Microbial adaptation to spaceflight is correlated with bacteriophage-encoded functions. Description: Irby, Iris, et al. Microbial adaptation to spaceflight is correlated with bacteriophage-encoded functions. ''Nat Commun''. 2024 May 15; '''15''' (1):3474
Uncoupled: investigating the lack of correlation between the transcription of putative plastic-degrading genes in the global ocean microbiome and marine plastic pollution. Description: Gambarini, Victor, et al. Uncoupled: investigating the lack of correlation between the transcription of putative plastic-degrading genes in the global ocean microbiome and marine plastic pollution. ''Environ Microbiome''. 2024 May 15; '''19''' (1):34
Genomic Analysis of Kitasatospora setae to Explore Its Biosynthetic Potential Regarding Secondary Metabolites. Description: Xue, Yutong, et al. Genomic Analysis of Kitasatospora setae to Explore Its Biosynthetic Potential Regarding Secondary Metabolites. ''Antibiotics (Basel)''. 2024 May 16; '''13''' (5):
Impaired signaling pathways on Berardinelli-Seip congenital lipodystrophy macrophages during Leishmania infantum infection. Description: Nogueira, Viviane Brito, et al. Impaired signaling pathways on Berardinelli-Seip congenital lipodystrophy macrophages during Leishmania infantum infection. ''Sci Rep''. 2024 May 16; '''14''' (1):11236
Discovery of fungal onoceroid triterpenoids through domainless enzyme-targeted global genome mining. Description: Tang, Jia, et al. Discovery of fungal onoceroid triterpenoids through domainless enzyme-targeted global genome mining. ''Nat Commun''. 2024 May 21; '''15''' (1):4312
Exploring Alashan Ground Squirrel (Spermophilus alashanicus) Diversity: Metagenomic and Transcriptomic Datasets from the Helan Mountains. Description: Zhao, Yao, et al. Exploring Alashan Ground Squirrel (Spermophilus alashanicus) Diversity: Metagenomic and Transcriptomic Datasets from the Helan Mountains. ''Sci Data''. 2024 May 21; '''11''' (1):517
Meta-analysis of shotgun sequencing of gut microbiota in Parkinson's disease. Description: Nishiwaki, Hiroshi, et al. Meta-analysis of shotgun sequencing of gut microbiota in Parkinson's disease. ''NPJ Parkinsons Dis''. 2024 May 21; '''10''' (1):106
General synthesis of ionic-electronic coupled two-dimensional materials. Description: Xu, Xiang, et al. General synthesis of ionic-electronic coupled two-dimensional materials. ''Nat Commun''. 2024 May 22; '''15''' (1):4368
Acarbose Impairs Gut Bacteroides Growth by Targeting Intracellular GH97 Enzymes. Description: Brown, Haley A, et al. Acarbose Impairs Gut Bacteroides Growth by Targeting Intracellular GH97 Enzymes. ''bioRxiv''. 2024 May 23;
A comprehensive review and comparison of existing computational methods for protein function prediction. Description: Lin, Baohui, et al. A comprehensive review and comparison of existing computational methods for protein function prediction. ''Brief Bioinform''. 2024 May 23; '''25''' (4):
Novel Re(I) Complexes as Potential Selective Theranostic Agents in Cancer Cells and In Vivo in Caenorhabditis elegans Tumoral Strains. Description: Marco, Alicia, et al. Novel Re(I) Complexes as Potential Selective Theranostic Agents in Cancer Cells and In Vivo in Caenorhabditis elegans Tumoral Strains. ''J Med Chem''. 2024 May 23; '''67''' (10):7891-7910
PlasmidHunter: accurate and fast prediction of plasmid sequences using gene content profile and machine learning. Description: Tian, Renmao, et al. PlasmidHunter: accurate and fast prediction of plasmid sequences using gene content profile and machine learning. ''Brief Bioinform''. 2024 May 23; '''25''' (4):
Bacterial dynamics of the plastisphere microbiome exposed to sub-lethal antibiotic pollution. Description: Joannard, Brune, et al. Bacterial dynamics of the plastisphere microbiome exposed to sub-lethal antibiotic pollution. ''Microbiome''. 2024 May 24; '''12''' (1):97
Comparative analysis, diversification, and functional validation of plant nucleotide-binding site domain genes. Description: Hussain, Athar, et al. Comparative analysis, diversification, and functional validation of plant nucleotide-binding site domain genes. ''Sci Rep''. 2024 May 24; '''14''' (1):11930
Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.). Description: Wu, Liang, et al. Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.). ''Sci Data''. 2024 May 24; '''11''' (1):534
Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae. Description: Puginier, Camille, et al. Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae. ''Nat Commun''. 2024 May 24; '''15''' (1):4452
Bacteroidales reduces growth rate through serum metabolites and cytokines in Chinese Ningdu yellow chickens. Description: Xiong, Xinwei, et al. Bacteroidales reduces growth rate through serum metabolites and cytokines in Chinese Ningdu yellow chickens. ''Poult Sci''. 2024 May 25; '''103''' (8):103905
Characterization of Two Novel Single-Stranded RNA Viruses from Agroathelia rolfsii, the Causal Agent of Peanut Stem Rot. Description: Yu, Dongyang, et al. Characterization of Two Novel Single-Stranded RNA Viruses from Agroathelia rolfsii, the Causal Agent of Peanut Stem Rot. ''Viruses''. 2024 May 27; '''16''' (6):
Comparative genomic analysis of Planctomycetota potential for polysaccharide degradation identifies biotechnologically relevant microbes. Description: Klimek, Dominika, et al. Comparative genomic analysis of Planctomycetota potential for polysaccharide degradation identifies biotechnologically relevant microbes. ''BMC Genomics''. 2024 May 27; '''25''' (1):523
Discovery of novel RNA viruses through analysis of fungi-associated next-generation sequencing data. Description: Lu, Xiang, et al. Discovery of novel RNA viruses through analysis of fungi-associated next-generation sequencing data. ''BMC Genomics''. 2024 May 27; '''25''' (1):517
Temperature Dependence of the Ring Opening of Cyclopropene Imines on Thorium Metallocenes. Description: Deka, Hemanta, et al. Temperature Dependence of the Ring Opening of Cyclopropene Imines on Thorium Metallocenes. ''Inorg Chem''. 2024 May 27; '''63''' (21):9572-9578
Design of a new palladium(ii) halide complex as a bio-active material: synthesis, physico-chemical studies, DFT-computations and evaluation of anti-inflammatory, antioxidant and anti-gastric damage activities. Description: Design of a new palladium(ii) halide complex as a bio-active material: synthesis, physico-chemical studies, DFT-computations and evaluation of anti-inflammatory, antioxidant and anti-gastric damage activities. ''''. 2024 May 28; '''14''' (25):17413-17433
Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands. Description: Medvedev, Kirill E, et al. Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands. ''Sci Rep''. 2024 May 28; '''14''' (1):12260
A metagenomic analysis of the phase 2 Anopheles gambiae 1000 genomes dataset reveals a wide diversity of cobionts associated with field collected mosquitoes. Description: Pastusiak, Andrzej, et al. A metagenomic analysis of the phase 2 Anopheles gambiae 1000 genomes dataset reveals a wide diversity of cobionts associated with field collected mosquitoes. ''Commun Biol''. 2024 May 30; '''7''' (1):667
Combining metabolomics and transcriptomics to reveal the potential medicinal value of rare species Glycyrrhiza squamulose. Description: Ma, Bin, et al. Combining metabolomics and transcriptomics to reveal the potential medicinal value of rare species Glycyrrhiza squamulose. ''Heliyon''. 2024 May 30; '''10''' (10):e30868
Influence of helicobacter pylori on composition and function of gastric microbiota in patients with chronic non-atrophic gastritis. Description: Zhao, Fan, et al. Influence of helicobacter pylori on composition and function of gastric microbiota in patients with chronic non-atrophic gastritis. ''Heliyon''. 2024 May 30; '''10''' (10):e31472
Evolutionary origin and gradual accumulation with plant evolution of the LACS family. Description: Zhou, Siyuan, et al. Evolutionary origin and gradual accumulation with plant evolution of the LACS family. ''BMC Plant Biol''. 2024 May 31; '''24''' (1):481
Genomic and Metagenomic Insights into the Distribution of Nicotine-degrading Enzymes in Human Microbiota. Description: Guan, Ying, et al. Genomic and Metagenomic Insights into the Distribution of Nicotine-degrading Enzymes in Human Microbiota. ''Curr Genomics''. 2024 May 31; '''25''' (3):226-235
A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. Description: Secci-Petretto, Giulia, et al. A multi-tissue de novo transcriptome assembly and relative gene expression of the vulnerable freshwater salmonid Thymallus ligericus. ''Genetica''. 2024 Jun; '''152''' (2-3):71-81
Bacterioplankton taxa compete for iron along the early spring-summer transition in the Arctic Ocean. Description: Puente-Sanchez, Fernando, et al. Bacterioplankton taxa compete for iron along the early spring-summer transition in the Arctic Ocean. ''Ecol Evol''. 2024 Jun; '''14''' (6):e11546
Challenges in computational discovery of bioactive peptides in 'omics data. Description: Coelho, Luis Pedro, et al. Challenges in computational discovery of bioactive peptides in 'omics data. ''Proteomics''. 2024 Jun; '''24''' (12-13):e2300105
Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq. Description: Yu, Dan, et al. Characterization of transcriptome changes in saline stress adaptation on Leuciscus merzbacheri using PacBio Iso-Seq and RNA-Seq. ''DNA Res''. 2024 Jun 1; '''31''' (3):
Circulation of Non-Middle East Respiratory Syndrome (MERS) Coronaviruses in Imported Camels in Saudi Arabia. Description: Alraddadi, Yasser, et al. Circulation of Non-Middle East Respiratory Syndrome (MERS) Coronaviruses in Imported Camels in Saudi Arabia. ''Cureus''. 2024 Jun; '''16''' (6):e63351
Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira). Description: Nakamura, Yoji, et al. Draft genome sequence and tissue expression panel of Pacific saury (Cololabis saira). ''DNA Res''. 2024 Jun 1; '''31''' (3):
Effects of Probiotics on Preterm Infant Gut Microbiota Across Populations: A Systematic Review and Meta-Analysis. Description: He, Pandi, et al. Effects of Probiotics on Preterm Infant Gut Microbiota Across Populations: A Systematic Review and Meta-Analysis. ''Adv Nutr''. 2024 Jun; '''15''' (6):100233
First transcriptome sequencing, assembly, and annotation dataset for the freshwater angelfish, pterophyllum scalare. Description: Madireddy, Indeever. First transcriptome sequencing, assembly, and annotation dataset for the freshwater angelfish, pterophyllum scalare. ''Data Brief''. 2024 Jun; '''54''': 110400
Genome features and carbohydrate-active enzymes repertoire of a novel Stenotrophomonas sepilia Alg010 strain isolated from Sargassum seaweed waste. Description: Mohapatra, Bidyut R. Genome features and carbohydrate-active enzymes repertoire of a novel Stenotrophomonas sepilia Alg010 strain isolated from Sargassum seaweed waste. ''Data Brief''. 2024 Jun; '''54''': 110533
Gut Microbiota-Tryptophan Metabolism-GLP-1 Axis Participates in beta-Cell Regeneration Induced by Dapagliflozin. Description: Jiang, Yafei, et al. Gut Microbiota-Tryptophan Metabolism-GLP-1 Axis Participates in beta-Cell Regeneration Induced by Dapagliflozin. ''Diabetes''. 2024 Jun 1; '''73''' (6):926-940
Metagenomic analysis of the effects of salinity on microbial community and functional gene diversity in glacial meltwater estuary, Ny-Alesund, Arctic. Description: Yang, Fan, et al. Metagenomic analysis of the effects of salinity on microbial community and functional gene diversity in glacial meltwater estuary, Ny-Alesund, Arctic. ''Braz J Microbiol''. 2024 Jun; '''55''' (2):1587-1599
Plants attacked above-ground by leaf-mining flies change below-ground microbiota to enhance plant defense. Description: Gao, Yang, et al. Plants attacked above-ground by leaf-mining flies change below-ground microbiota to enhance plant defense. ''Hortic Res''. 2024 Jun; '''11''' (6):uhae121
Protein remote homology detection and structural alignment using deep learning. Description: Hamamsy, Tymor, et al. Protein remote homology detection and structural alignment using deep learning. ''Nat Biotechnol''. 2024 Jun; '''42''' (6):975-985
IMA Genome - F19 : A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix steno... Description: Aylward, Janneke, et al. IMA Genome - F19 : A genome assembly and annotation guide to empower mycologists, including annotated draft genome sequences of Ceratocystis pirilliformis, Diaporthe australafricana, Fusarium ophioides, Paecilomyces lecythidis, and Sporothrix stenoceras. ''IMA Fungus''. 2024 Jun 3; '''15''' (1):12
Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome. Description: Yuan, Yifeng, et al. Phosphorothioate DNA modification by BREX Type 4 systems in the human gut microbiome. ''bioRxiv''. 2024 Jun 3;
Chromosome-level genome assembly of the snakefly Mongoloraphidia duomilia (Raphidioptera: Raphidiidae). Description: Shen, Rongrong, et al. Chromosome-level genome assembly of the snakefly Mongoloraphidia duomilia (Raphidioptera: Raphidiidae). ''Sci Data''. 2024 Jun 4; '''11''' (1):579
Intake of compound probiotics accelerates the construction of immune function and gut microbiome in Holstein calves. Description: Cai, Xinghua, et al. Intake of compound probiotics accelerates the construction of immune function and gut microbiome in Holstein calves. ''Microbiol Spectr''. 2024 Jun 4; '''12''' (6):e0190923
Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae. Description: Javed, Muhammad Asim, et al. Telomere-to-telomere Genome Assembly of the Clubroot Pathogen Plasmodiophora Brassicae. ''Genome Biol Evol''. 2024 Jun 4; '''16''' (6):
Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla. Description: Cheng, Shiping, et al. Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla. ''Sci Data''. 2024 Jun 5; '''11''' (1):589
A haplotype-resolved genome assembly of Malus domestica 'Red Fuji'. Description: Peng, Haixu, et al. A haplotype-resolved genome assembly of Malus domestica 'Red Fuji'. ''Sci Data''. 2024 Jun 6; '''11''' (1):592
Compendium of 5810 genomes of sheep and goat gut microbiomes provides new insights into the glycan and mucin utilization. Description: Zhang, Ke, et al. Compendium of 5810 genomes of sheep and goat gut microbiomes provides new insights into the glycan and mucin utilization. ''Microbiome''. 2024 Jun 6; '''12''' (1):104
Innovative use of liquid crystalline acids as color developers in leuco dye-based temperature sensors. Description: Pawlow, J, et al. Innovative use of liquid crystalline acids as color developers in leuco dye-based temperature sensors. ''RSC Adv''. 2024 Jun 6; '''14''' (26):18663-18670
Characterization of Taxonomic and Functional Dynamics Associated with Harmful Algal Bloom Formation in Recreational Water Ecosystems. Description: Saleem, Faizan, et al. Characterization of Taxonomic and Functional Dynamics Associated with Harmful Algal Bloom Formation in Recreational Water Ecosystems. ''Toxins (Basel)''. 2024 Jun 7; '''16''' (6):
Comparative transcriptomics elucidates the cellular responses of an aeroterrestrial zygnematophyte to UV radiation. Description: Busch, Anna, et al. Comparative transcriptomics elucidates the cellular responses of an aeroterrestrial zygnematophyte to UV radiation. ''J Exp Bot''. 2024 Jun 7; '''75''' (11):3624-3642
The nuclear and mitochondrial genome assemblies of Tetragonisca angustula (Apidae: Meliponini), a tiny yet remarkable pollinator in the Neotropics. Description: Ferrari, Rafael Rodrigues, et al. The nuclear and mitochondrial genome assemblies of Tetragonisca angustula (Apidae: Meliponini), a tiny yet remarkable pollinator in the Neotropics. ''BMC Genomics''. 2024 Jun 11; '''25''' (1):587
Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year. Description: Selma-Royo, Marta, et al. Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year. ''Cell Host Microbe''. 2024 Jun 12; '''32''' (6):996-1010.e4
Pollution pressure drives microbial assemblages that improve the phytoremediation potential of heavy metals by Ricinus communis. Description: Rubio-Noguez, Daniela, et al. Pollution pressure drives microbial assemblages that improve the phytoremediation potential of heavy metals by Ricinus communis. ''World J Microbiol Biotechnol''. 2024 Jun 13; '''40''' (8):241
Sex-biased gene expression precedes sexual dimorphism in the agonadal annelid Platynereis dumerilii. Description: Ribeiro, Rannyele P, et al. Sex-biased gene expression precedes sexual dimorphism in the agonadal annelid Platynereis dumerilii. ''bioRxiv''. 2024 Jun 13;
The radiation of New Zealand's skinks and geckos is associated with distinct viromes. Description: Waller, Stephanie J, et al. The radiation of New Zealand's skinks and geckos is associated with distinct viromes. ''BMC Ecol Evol''. 2024 Jun 13; '''24''' (1):81
Distinct signatures of gut microbiota and metabolites in primary biliary cholangitis with poor biochemical response after ursodeoxycholic acid treatment. Description: Han, Weijia, et al. Distinct signatures of gut microbiota and metabolites in primary biliary cholangitis with poor biochemical response after ursodeoxycholic acid treatment. ''Cell Biosci''. 2024 Jun 15; '''14''' (1):80
Metagenomic and culture-dependent analysis of Rhinopithecius bieti gut microbiota and characterization of a novel genus of Sphingobacteriaceae. Description: Wang, Qiong, et al. Metagenomic and culture-dependent analysis of Rhinopithecius bieti gut microbiota and characterization of a novel genus of Sphingobacteriaceae. ''Sci Rep''. 2024 Jun 15; '''14''' (1):13819
Organic fertilization co-selects genetically linked antibiotic and metal(loid) resistance genes in global soil microbiome. Description: Liu, Zi-Teng, et al. Organic fertilization co-selects genetically linked antibiotic and metal(loid) resistance genes in global soil microbiome. ''Nat Commun''. 2024 Jun 17; '''15''' (1):5168
Fusion/fission protein family identification in Archaea. Description: Padalko, Anastasiia, et al. Fusion/fission protein family identification in Archaea. ''mSystems''. 2024 Jun 18; '''9''' (6):e0094823
Haplotype-resolved assembly of a pig genome using single-sperm sequencing. Description: Niu, Yongchao, et al. Haplotype-resolved assembly of a pig genome using single-sperm sequencing. ''Commun Biol''. 2024 Jun 18; '''7''' (1):738
Lactobacillus-derived protoporphyrin IX and SCFAs regulate the fiber size via glucose metabolism in the skeletal muscle of chickens. Description: Cai, Liyuan, et al. Lactobacillus-derived protoporphyrin IX and SCFAs regulate the fiber size via glucose metabolism in the skeletal muscle of chickens. ''mSystems''. 2024 Jun 18; '''9''' (6):e0021424
Multi-omics strategy reveals potential role of antimicrobial resistance and virulence factor genes responsible for Simmental diarrheic calves caused by Escherichia coli. Description: Shi, Zhihai, et al. Multi-omics strategy reveals potential role of antimicrobial resistance and virulence factor genes responsible for Simmental diarrheic calves caused by Escherichia coli. ''mSystems''. 2024 Jun 18; '''9''' (6):e0134823
Trichomonas vaginalis extracellular vesicles up-regulate and directly transfer adherence factors promoting host cell colonization. Description: Kochanowsky, Joshua A, et al. Trichomonas vaginalis extracellular vesicles up-regulate and directly transfer adherence factors promoting host cell colonization. ''Proc Natl Acad Sci U S A''. 2024 Jun 18; '''121''' (25):e2401159121
Characterization and Genome Analysis of the Delftia lacustris Strain LzhVag01 Isolated from Vaginal Discharge. Description: Zhang, Li, et al. Characterization and Genome Analysis of the Delftia lacustris Strain LzhVag01 Isolated from Vaginal Discharge. ''Curr Microbiol''. 2024 Jun 19; '''81''' (8):232
Description of new micro-colonial fungi species Neophaeococcomyces mojavensis, Coniosporium tulheliwenetii, and Taxawa tesnikishii cultured from biological soil crusts. Description: Kurbessoian, Tania, et al. Description of new micro-colonial fungi species Neophaeococcomyces mojavensis, Coniosporium tulheliwenetii, and Taxawa tesnikishii cultured from biological soil crusts. ''bioRxiv''. 2024 Jun 20;
Minimal and hybrid hydrogenases are active from archaea. Description: Greening, Chris, et al. Minimal and hybrid hydrogenases are active from archaea. ''Cell''. 2024 Jun 20; '''187''' (13):3357-3372.e19
Physiological and transcriptomic analyses reveal the regulatory mechanisms of Anoectochilus roxburghii in response to high-temperature stress. Description: Zhang, Linghui, et al. Physiological and transcriptomic analyses reveal the regulatory mechanisms of Anoectochilus roxburghii in response to high-temperature stress. ''BMC Plant Biol''. 2024 Jun 20; '''24''' (1):584
Chromosome-scale genome assemblies of sexually dimorphic male and female Acrossocheilus fasciatus. Description: Yuan, Yixin, et al. Chromosome-scale genome assemblies of sexually dimorphic male and female Acrossocheilus fasciatus. ''Sci Data''. 2024 Jun 21; '''11''' (1):653
Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. Description: Ren, Xianyun, et al. Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. ''Sci Data''. 2024 Jun 22; '''11''' (1):662
Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries. Description: de Oliveira Lino, Felipe Senne, et al. Strain dynamics of contaminating bacteria modulate the yield of ethanol biorefineries. ''Nat Commun''. 2024 Jun 22; '''15''' (1):5323
Comparative analysis of lipid and flavonoid biosynthesis between Pongamia and soybean seeds: genomic, transcriptional, and metabolic perspectives. Description: Liu, Chun, et al. Comparative analysis of lipid and flavonoid biosynthesis between Pongamia and soybean seeds: genomic, transcriptional, and metabolic perspectives. ''Biotechnol Biofuels Bioprod''. 2024 Jun 24; '''17''' (1):86
Entourage: all-in-one sequence analysis software for genome assembly, virus detection, virus discovery, and intrasample variation profiling. Description: Phumiphanjarphak, Worakorn, et al. Entourage: all-in-one sequence analysis software for genome assembly, virus detection, virus discovery, and intrasample variation profiling. ''BMC Bioinformatics''. 2024 Jun 24; '''25''' (1):222
Peracetic acid treatment of squid eggs infected with parasitic copepod (Ikanecator primus gen. et sp. nov.). Description: Zoral, Mehmet Arif, et al. Peracetic acid treatment of squid eggs infected with parasitic copepod (Ikanecator primus gen. et sp. nov.). ''Sci Rep''. 2024 Jun 24; '''14''' (1):14513
Bioinformatic prediction of proteins relevant to functions of the bacterial OLE ribonucleoprotein complex. Description: Fernando, Chrishan M, et al. Bioinformatic prediction of proteins relevant to functions of the bacterial OLE ribonucleoprotein complex. ''mSphere''. 2024 Jun 25; '''9''' (6):e0015924
circIARS: a potential plasma biomarker for diagnosing non-small cell lung cancer. Description: Zhang, Qi, et al. circIARS: a potential plasma biomarker for diagnosing non-small cell lung cancer. ''Acta Biochim Biophys Sin (Shanghai)''. 2024 Jun 25; '''56''' (6):927-936
Comparative genomic analysis of strain Priestia megaterium B1 reveals conserved potential for adaptation to endophytism and plant growth promotion. Description: Mahmoud, Fatma M, et al. Comparative genomic analysis of strain Priestia megaterium B1 reveals conserved potential for adaptation to endophytism and plant growth promotion. ''Microbiol Spectr''. 2024 Jun 25; '''12''' (8):e0042224
GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes. Description: Bruna, Tomas, et al. GeneMark-ETP significantly improves the accuracy of automatic annotation of large eukaryotic genomes. ''Genome Res''. 2024 Jun 25; '''34''' (5):757-768
Metagenomic insights into microbial adaptation to the salinity gradient of a typical short residence-time estuary. Description: Wu, Ziheng, et al. Metagenomic insights into microbial adaptation to the salinity gradient of a typical short residence-time estuary. ''Microbiome''. 2024 Jun 25; '''12''' (1):115
Database Bias in the Detection of Interdomain Horizontal Gene Transfer Events in Pezizomycotina. Description: Aguirre-Carvajal, Kevin, et al. Database Bias in the Detection of Interdomain Horizontal Gene Transfer Events in Pezizomycotina. ''Biology (Basel)''. 2024 Jun 26; '''13''' (7):
Effects of aeolian deposition on soil properties and microbial carbon metabolism function in farmland of Songnen Plain, China. Description: Mo, Jixian, et al. Effects of aeolian deposition on soil properties and microbial carbon metabolism function in farmland of Songnen Plain, China. ''Sci Rep''. 2024 Jun 26; '''14''' (1):14791
Proteomic profiling of prostate cancer reveals molecular signatures under antiandrogen treatment. Description: Huang, Yurun, et al. Proteomic profiling of prostate cancer reveals molecular signatures under antiandrogen treatment. ''Clin Proteomics''. 2024 Jun 26; '''21''' (1):44
Quantitative and dynamic profiling of human gut core microbiota by real-time PCR. Description: Yan, Ziheng, et al. Quantitative and dynamic profiling of human gut core microbiota by real-time PCR. ''Appl Microbiol Biotechnol''. 2024 Jun 26; '''108''' (1):396
Trichomes and unique gene expression confer insect herbivory resistance in Vitis labrusca grapevines. Description: Dixon, Cullen W, et al. Trichomes and unique gene expression confer insect herbivory resistance in Vitis labrusca grapevines. ''BMC Plant Biol''. 2024 Jun 27; '''24''' (1):609
Predicting protein functions using positive-unlabeled ranking with ontology-based priors. Description: Zhapa-Camacho, Fernando, et al. Predicting protein functions using positive-unlabeled ranking with ontology-based priors. ''Bioinformatics''. 2024 Jun 28; '''40''' (Supplement_1):i401-i409
Cadmium exposure induces changes in gut microbial composition and metabolic function in long-tailed dwarf hamsters, Cricetulus longicaudatus. Description: Tao, Mengfan, et al. Cadmium exposure induces changes in gut microbial composition and metabolic function in long-tailed dwarf hamsters, Cricetulus longicaudatus. ''Ecol Evol''. 2024 Jul; '''14''' (7):e11682
Evolutionary assembly of the plant terrestrialization toolkit from protein domains. Description: Dhabalia Ashok, Amra, et al. Evolutionary assembly of the plant terrestrialization toolkit from protein domains. ''Proc Biol Sci''. 2024 Jul; '''291''' (2027):20240985
Exploratory multi-omics analysis reveals host-microbe interactions associated with disease severity in psoriatic skin. Description: Yang, Ying, et al. Exploratory multi-omics analysis reveals host-microbe interactions associated with disease severity in psoriatic skin. ''EBioMedicine''. 2024 Jul; '''105''': 105222
Exploring the diversity of galls on Artemisia indica induced by Rhopalomyia species through morphological and transcriptome analyses. Description: Takeda, Seiji, et al. Exploring the diversity of galls on Artemisia indica induced by Rhopalomyia species through morphological and transcriptome analyses. ''Plant Direct''. 2024 Jul; '''8''' (7):e619
Glyoxal oxidase-mediated detoxification of reactive carbonyl species contributes to virulence, stress tolerance, and development in a pathogenic fungus. Description: Liu, Xiaoyu, et al. Glyoxal oxidase-mediated detoxification of reactive carbonyl species contributes to virulence, stress tolerance, and development in a pathogenic fungus. ''PLoS Pathog''. 2024 Jul; '''20''' (7):e1012431
Haplotype-resolved genome assembly for tetraploid Chinese cherry (Prunus pseudocerasus) offers insights into fruit firmness. Description: Jiu, Songtao, et al. Haplotype-resolved genome assembly for tetraploid Chinese cherry (Prunus pseudocerasus) offers insights into fruit firmness. ''Hortic Res''. 2024 Jul; '''11''' (7):uhae142
Induction of apoptosis by double-stranded RNA was present in the last common ancestor of cnidarian and bilaterian animals. Description: Kozlovski, Itamar, et al. Induction of apoptosis by double-stranded RNA was present in the last common ancestor of cnidarian and bilaterian animals. ''PLoS Pathog''. 2024 Jul; '''20''' (7):e1012320
Integrated multi-omics investigation revealed the importance of phenylpropanoid metabolism in the defense response of Lilium regale Wilson to fusarium wilt. Description: Deng, Jie, et al. Integrated multi-omics investigation revealed the importance of phenylpropanoid metabolism in the defense response of Lilium regale Wilson to fusarium wilt. ''Hortic Res''. 2024 Jul; '''11''' (7):uhae140
Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight. Description: Tierney, Braden T, et al. Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight. ''Nat Microbiol''. 2024 Jul; '''9''' (7):1661-1675
The radical impact of oxygen on prokaryotic evolution-enzyme inhibition first, uninhibited essential biosyntheses second, aerobic respiration third. Description: Mrnjavac, Natalia, et al. The radical impact of oxygen on prokaryotic evolution-enzyme inhibition first, uninhibited essential biosyntheses second, aerobic respiration third. ''FEBS Lett''. 2024 Jul; '''598''' (14):1692-1714
Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae. Description: Chen, Yanyu, et al. Chromosome-level genome assembly of Helwingia omeiensis: the first genome in the family Helwingiaceae. ''Sci Data''. 2024 Jul 2; '''11''' (1):719
Gut virome alterations in patients with chronic obstructive pulmonary disease. Description: Liu, Yue, et al. Gut virome alterations in patients with chronic obstructive pulmonary disease. ''Microbiol Spectr''. 2024 Jul 2; '''12''' (7):e0428723
The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages. Description: Chia, Khong-Sam, et al. The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages. ''Plant Cell''. 2024 Jul 2; '''36''' (7):2491-2511
Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee Bombus dahlbomii. Description: Martinez, Lican, et al. Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee Bombus dahlbomii. ''Genome Biol Evol''. 2024 Jul 3; '''16''' (7):
Long-Read-Based Hybrid Genome Assembly and Annotation of Snow Algal Strain CCCryo 101-99 (cf. Sphaerocystis sp., Chlamydomonadales). Description: Ciftci, Ozan, et al. Long-Read-Based Hybrid Genome Assembly and Annotation of Snow Algal Strain CCCryo 101-99 (cf. Sphaerocystis sp., Chlamydomonadales). ''Genome Biol Evol''. 2024 Jul 3; '''16''' (7):
Molecular Dating of the Teleost Whole Genome Duplication (3R) Is Compatible With the Expectations of Delayed Rediploidization. Description: Qi, Minbo, et al. Molecular Dating of the Teleost Whole Genome Duplication (3R) Is Compatible With the Expectations of Delayed Rediploidization. ''Genome Biol Evol''. 2024 Jul 3; '''16''' (7):
Annotation and visualization of parasite, fungi and arthropod genomes with Companion. Description: Haese-Hill, William, et al. Annotation and visualization of parasite, fungi and arthropod genomes with Companion. ''Nucleic Acids Res''. 2024 Jul 5; '''52''' (W1):W39-W44
Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments. Description: Jiao, Jian-Yu, et al. Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments. ''Microbiome''. 2024 Jul 6; '''12''' (1):123
A reference-grade genome of the xerophyte Ammopiptanthus mongolicus sheds light on its evolution history in legumes and drought-tolerance mechanisms. Description: Feng, Lei, et al. A reference-grade genome of the xerophyte Ammopiptanthus mongolicus sheds light on its evolution history in legumes and drought-tolerance mechanisms. ''Plant Commun''. 2024 Jul 8; '''5''' (7):100891
Crossroads of assembling a moss genome: navigating contaminants and horizontal gene transfer in the moss Physcomitrellopsis africana. Description: Vuruputoor, Vidya S, et al. Crossroads of assembling a moss genome: navigating contaminants and horizontal gene transfer in the moss Physcomitrellopsis africana. ''G3 (Bethesda)''. 2024 Jul 8; '''14''' (7):
Fluorinated chlorin chromophores for red-light-driven CO(2) reduction. Description: Yang, Shuang, et al. Fluorinated chlorin chromophores for red-light-driven CO(2) reduction. ''Nat Commun''. 2024 Jul 8; '''15''' (1):5704
Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. Description: Brown, Alec, et al. Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen Aspergillus fumigatus. ''G3 (Bethesda)''. 2024 Jul 8; '''14''' (7):
The genome of the Arctic snow alga Limnomonas spitsbergensis (Chlamydomonadales). Description: Hulatt, Chris J, et al. The genome of the Arctic snow alga Limnomonas spitsbergensis (Chlamydomonadales). ''G3 (Bethesda)''. 2024 Jul 8; '''14''' (7):
Iron Chelation in Soil: Scalable Biotechnology for Accelerating Carbon Dioxide Removal by Enhanced Rock Weathering. Description: Epihov, Dimitar Z, et al. Iron Chelation in Soil: Scalable Biotechnology for Accelerating Carbon Dioxide Removal by Enhanced Rock Weathering. ''Environ Sci Technol''. 2024 Jul 9; '''58''' (27):11970-11987
Chromosome-level Genome Assembly of Theretra japonica (Lepidoptera: Sphingidae). Description: Yan, Ming, et al. Chromosome-level Genome Assembly of Theretra japonica (Lepidoptera: Sphingidae). ''Sci Data''. 2024 Jul 12; '''11''' (1):770
DNA methylation enables recurrent endogenization of giant viruses in an animal relative. Description: Sarre, Luke A, et al. DNA methylation enables recurrent endogenization of giant viruses in an animal relative. ''Sci Adv''. 2024 Jul 12; '''10''' (28):eado6406
Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria. Description: Maire, Yanis, et al. Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria. ''FEMS Microbiol Ecol''. 2024 Jul 12; '''100''' (8):
A high-quality chromosome-level genome assembly of the endangered tree Kmeria septentrionalis. Description: Shi, Chen-Yu, et al. A high-quality chromosome-level genome assembly of the endangered tree Kmeria septentrionalis. ''Sci Data''. 2024 Jul 13; '''11''' (1):775
Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau. Description: Kang, Luyao, et al. Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau. ''Nat Commun''. 2024 Jul 14; '''15''' (1):5920
Genomic and single-cell analyses reveal genetic signatures of swimming pattern and diapause strategy in jellyfish. Description: Dong, Zhijun, et al. Genomic and single-cell analyses reveal genetic signatures of swimming pattern and diapause strategy in jellyfish. ''Nat Commun''. 2024 Jul 15; '''15''' (1):5936
Metabolic imaging across scales reveals distinct prostate cancer phenotypes. Description: Sushentsev, Nikita, et al. Metabolic imaging across scales reveals distinct prostate cancer phenotypes. ''Nat Commun''. 2024 Jul 16; '''15''' (1):5980
Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species. Description: Khodadadi, Fatemeh, et al. Unveiling the Arsenal of Apple Bitter Rot Fungi: Comparative Genomics Identifies Candidate Effectors, CAZymes, and Biosynthetic Gene Clusters in Colletotrichum Species. ''J Fungi (Basel)''. 2024 Jul 16; '''10''' (7):
The chromosome-level genome assembly of Aphidoletes aphidimyza Rondani (Diptera: Cecidomyiidae). Description: Shen, Xiuxian, et al. The chromosome-level genome assembly of Aphidoletes aphidimyza Rondani (Diptera: Cecidomyiidae). ''Sci Data''. 2024 Jul 17; '''11''' (1):785
Efficacy of stem cells versus microvesicles in ameliorating chronic renal injury in rats (histological and biochemical study). Description: Mohammed, Maha Z, et al. Efficacy of stem cells versus microvesicles in ameliorating chronic renal injury in rats (histological and biochemical study). ''Sci Rep''. 2024 Jul 18; '''14''' (1):16589
Gut microbiome in endometriosis: a cohort study on 1000 individuals. Description: Perez-Prieto, Inmaculada, et al. Gut microbiome in endometriosis: a cohort study on 1000 individuals. ''BMC Med''. 2024 Jul 18; '''22''' (1):294
A seasonal study on the microbiomes of Diploid vs. Triploid eastern oysters and their denitrification potential. Description: Pathak, Ashish, et al. A seasonal study on the microbiomes of Diploid vs. Triploid eastern oysters and their denitrification potential. ''iScience''. 2024 Jul 19; '''27''' (7):110193
Chromosome-level genome assembly of Plagiognathops microlepis based on PacBio HiFi and Hi-C sequencing. Description: Wu, Yidi, et al. Chromosome-level genome assembly of Plagiognathops microlepis based on PacBio HiFi and Hi-C sequencing. ''Sci Data''. 2024 Jul 19; '''11''' (1):802
Comparative genomic and transcriptomic analyses provide new insight into symbiotic host specificity. Description: Yuan, Songli, et al. Comparative genomic and transcriptomic analyses provide new insight into symbiotic host specificity. ''iScience''. 2024 Jul 19; '''27''' (7):110207
Diverse bacterial consortia: key drivers of rhizosoil fertility modulating microbiome functions, plant physiology, nutrition, and soybean grain yield. Description: Moretti, Luiz Gustavo, et al. Diverse bacterial consortia: key drivers of rhizosoil fertility modulating microbiome functions, plant physiology, nutrition, and soybean grain yield. ''Environ Microbiome''. 2024 Jul 19; '''19''' (1):50
Effect of time-restricted eating regimen on weight loss is mediated by gut microbiome. Description: Huang, Chensihan, et al. Effect of time-restricted eating regimen on weight loss is mediated by gut microbiome. ''iScience''. 2024 Jul 19; '''27''' (7):110202
Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neonatal calf. Description: Drake, Mary Jane, et al. Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neonatal calf. ''Anim Microbiome''. 2024 Jul 19; '''6''' (1):39
Fusobacterium species are distinctly associated with patients with Lynch syndrome colorectal cancer. Description: Salim, Felix, et al. Fusobacterium species are distinctly associated with patients with Lynch syndrome colorectal cancer. ''iScience''. 2024 Jul 19; '''27''' (7):110181
Green manure application improves insect resistance of subsequent crops through the optimization of soil nutrients and rhizosphere microbiota. Description: Ma, Lin, et al. Green manure application improves insect resistance of subsequent crops through the optimization of soil nutrients and rhizosphere microbiota. ''iScience''. 2024 Jul 19; '''27''' (7):110320
Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring. Description: Ding, Lu, et al. Maternal high fat diet induces circadian clock-independent endocrine alterations impacting the metabolism of the offspring. ''iScience''. 2024 Jul 19; '''27''' (7):110343
Prostate cancer detection through unbiased capture of methylated cell-free DNA. Description: Lleshi, Ermira, et al. Prostate cancer detection through unbiased capture of methylated cell-free DNA. ''iScience''. 2024 Jul 19; '''27''' (7):110330
Rumen and hindgut microbiome regulate average daily gain of preweaning Holstein heifer calves in different ways. Description: Xu, Sheng-Yang, et al. Rumen and hindgut microbiome regulate average daily gain of preweaning Holstein heifer calves in different ways. ''Microbiome''. 2024 Jul 19; '''12''' (1):131
The genome of African manatee Trichechus senegalensis reveals secondary adaptation to the aquatic environment. Description: Huang, Xin, et al. The genome of African manatee Trichechus senegalensis reveals secondary adaptation to the aquatic environment. ''iScience''. 2024 Jul 19; '''27''' (7):110394
ZnO nanoparticles encapsulated cellulose-lignin film for antibacterial and biodegradable food packaging. Description: Zhu, Xinyi, et al. ZnO nanoparticles encapsulated cellulose-lignin film for antibacterial and biodegradable food packaging. ''iScience''. 2024 Jul 19; '''27''' (7):110008
A chromosome-level genome assembly of Prosopocoilus inquinatus Westwood, 1848 (Coleoptera: Lucanidae). Description: Pang, Bo, et al. A chromosome-level genome assembly of Prosopocoilus inquinatus Westwood, 1848 (Coleoptera: Lucanidae). ''Sci Data''. 2024 Jul 20; '''11''' (1):808
A cross-sectional comparison of gut metagenomes between dairy workers and community controls. Description: Trinh, Pauline, et al. A cross-sectional comparison of gut metagenomes between dairy workers and community controls. ''BMC Genomics''. 2024 Jul 20; '''25''' (1):708
The Bifidobacterium-dominated fecal microbiome in dairy calves shapes the characteristic growth phenotype of host. Description: Zhuang, Yimin, et al. The Bifidobacterium-dominated fecal microbiome in dairy calves shapes the characteristic growth phenotype of host. ''NPJ Biofilms Microbiomes''. 2024 Jul 21; '''10''' (1):59
Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica. Description: Song, Miaomiao, et al. Chromosome-level genome assembly and annotation of xerophyte secretohalophyte Reaumuria soongarica. ''Sci Data''. 2024 Jul 22; '''11''' (1):812
Methanogenic patterns in the gut microbiome are associated with survival in a population of feral horses. Description: Stothart, Mason R, et al. Methanogenic patterns in the gut microbiome are associated with survival in a population of feral horses. ''Nat Commun''. 2024 Jul 22; '''15''' (1):6012
Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia. Description: Glendinning, Laura, et al. Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia. ''Microbiome''. 2024 Jul 23; '''12''' (1):138
Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. Description: Raghuram, Vishnu, et al. Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome. ''mSystems''. 2024 Jul 23; '''9''' (7):e0014324
Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA. Description: Rasmussen, Anna N, et al. Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA. ''mSystems''. 2024 Jul 23; '''9''' (7):e0031424
Extremely halophilic brine community manipulation shows higher robustness of microbiomes inhabiting human-driven solar saltern than naturally driven lake. Description: Liebana, Raquel, et al. Extremely halophilic brine community manipulation shows higher robustness of microbiomes inhabiting human-driven solar saltern than naturally driven lake. ''mSystems''. 2024 Jul 23; '''9''' (7):e0053824
Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria. Description: Lenferink, Wouter B, et al. Genomic analysis of the class Phycisphaerae reveals a versatile group of complex carbon-degrading bacteria. ''Antonie Van Leeuwenhoek''. 2024 Jul 23; '''117''' (1):104
Global compositional and functional states of the human gut microbiome in health and disease. Description: Lee, Sunjae, et al. Global compositional and functional states of the human gut microbiome in health and disease. ''Genome Res''. 2024 Jul 23; '''34''' (6):967-978
Gut microbiota and metabolic changes in children with idiopathic short stature. Description: Yan, Luyan, et al. Gut microbiota and metabolic changes in children with idiopathic short stature. ''BMC Pediatr''. 2024 Jul 23; '''24''' (1):468
Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins. Description: Vakirlis, Nikolaos, et al. Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins. ''Genome Res''. 2024 Jul 23; '''34''' (6):888-903
Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie. Description: Denison, Elizabeth R, et al. Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie. ''mSystems''. 2024 Jul 23; '''9''' (7):e0075324
PbI(2) Passivation of Three Dimensional PbS Quantum Dot Superlattices Toward Optoelectronic Metamaterials. Description: Pinna, Jacopo, et al. PbI(2) Passivation of Three Dimensional PbS Quantum Dot Superlattices Toward Optoelectronic Metamaterials. ''ACS Nano''. 2024 Jul 23; '''18''' (29):19124-19136
Toxicity to the Male Reproductive System after Exposure to Polystyrene Nanoplastics: A Macrogenomic and Metabolomic Analysis. Description: Zhang, Xue, et al. Toxicity to the Male Reproductive System after Exposure to Polystyrene Nanoplastics: A Macrogenomic and Metabolomic Analysis. ''Toxics''. 2024 Jul 23; '''12''' (8):
zDB: bacterial comparative genomics made easy. Description: Marquis, Bastian, et al. zDB: bacterial comparative genomics made easy. ''mSystems''. 2024 Jul 23; '''9''' (7):e0047324
A novel flavobacterial phage abundant during green tide, representing a new viral family, Zblingviridae. Description: Guo, Xiaoyue, et al. A novel flavobacterial phage abundant during green tide, representing a new viral family, Zblingviridae. ''Appl Environ Microbiol''. 2024 Jul 24; '''90''' (7):e0036724
Bifidobacterium longum subsp. longum BG-L47 boosts growth and activity of Limosilactobacillus reuteri DSM 17938 and its extracellular membrane vesicles. Description: Ermann Lundberg, Ludwig, et al. Bifidobacterium longum subsp. longum BG-L47 boosts growth and activity of Limosilactobacillus reuteri DSM 17938 and its extracellular membrane vesicles. ''Appl Environ Microbiol''. 2024 Jul 24; '''90''' (7):e0024724
Comparative membrane proteomic analysis of Tritrichomonas foetus isolates. Description: Rivero, Maria B, et al. Comparative membrane proteomic analysis of Tritrichomonas foetus isolates. ''Sci Rep''. 2024 Jul 24; '''14''' (1):17033
Aspergillus brasiliensis E_15.1: A Novel Thermophilic Endophyte from a Volcanic Crater Unveiled through Comprehensive Genome-Wide, Phenotypic Analysis, and Plant Growth-Promoting Trails. Description: Martirena-Ramirez, Amanda, et al. Aspergillus brasiliensis E_15.1: A Novel Thermophilic Endophyte from a Volcanic Crater Unveiled through Comprehensive Genome-Wide, Phenotypic Analysis, and Plant Growth-Promoting Trails. ''J Fungi (Basel)''. 2024 Jul 25; '''10''' (8):
Enteropathway: the metabolic pathway database for the human gut microbiota. Description: Shiroma, Hirotsugu, et al. Enteropathway: the metabolic pathway database for the human gut microbiota. ''Brief Bioinform''. 2024 Jul 25; '''25''' (5):
Synchrotron nano-FTIR spectroscopy for probing anticancer drugs at subcellular scale. Description: de Carvalho, Luis A E Batista, et al. Synchrotron nano-FTIR spectroscopy for probing anticancer drugs at subcellular scale. ''Sci Rep''. 2024 Jul 26; '''14''' (1):17166
High Degree of Polymerization of Chitin Oligosaccharides Produced from Shrimp Shell Waste by Enrichment Microbiota Using Two-Stage Temperature-Controlled Technique of Inducing Enzyme Production and Metagenomic Analysis of Microbiota Succession. Description: Pan, Delong, et al. High Degree of Polymerization of Chitin Oligosaccharides Produced from Shrimp Shell Waste by Enrichment Microbiota Using Two-Stage Temperature-Controlled Technique of Inducing Enzyme Production and Metagenomic Analysis of Microbiota Succession. ''Mar Drugs''. 2024 Jul 28; '''22''' (8):
Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost. Description: Li, Yaoming, et al. Genomic insights into redox-driven microbial processes for carbon decomposition in thawing Arctic soils and permafrost. ''mSphere''. 2024 Jul 30; '''9''' (7):e0025924
Hierarchical multi-task deep learning-assisted construction of human gut microbiota reactive oxygen species-scavenging enzymes database. Description: Yan, Yueyang, et al. Hierarchical multi-task deep learning-assisted construction of human gut microbiota reactive oxygen species-scavenging enzymes database. ''mSphere''. 2024 Jul 30; '''9''' (7):e0034624
Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. Description: Zhao, Zihao, et al. Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. ''Nat Commun''. 2024 Jul 30; '''15''' (1):6411
Rodents consuming the same toxic diet harbor a unique functional core microbiome. Description: Stapleton, Tess E, et al. Rodents consuming the same toxic diet harbor a unique functional core microbiome. ''Anim Microbiome''. 2024 Jul 30; '''6''' (1):43
Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. Description: Leao, Pedro, et al. Asgard archaea defense systems and their roles in the origin of eukaryotic immunity. ''Nat Commun''. 2024 Jul 31; '''15''' (1):6386
Altered gut microbe metabolites in patients with alcohol‑induced osteonecrosis of the femoral head: An integrated omics analysis. Description: Yue, Chen, et al. Altered gut microbe metabolites in patients with alcohol‑induced osteonecrosis of the femoral head: An integrated omics analysis. ''Exp Ther Med''. 2024 Aug; '''28''' (2):311
Cholestyramine alleviates bone and muscle loss in irritable bowel syndrome via regulating bile acid metabolism. Description: Chen, Ming, et al. Cholestyramine alleviates bone and muscle loss in irritable bowel syndrome via regulating bile acid metabolism. ''Cell Prolif''. 2024 Aug; '''57''' (8):e13638
Comparative genomic analysis identifies potential adaptive variation in Mycoplasma ovipneumoniae. Description: Andrews, Kimberly R, et al. Comparative genomic analysis identifies potential adaptive variation in Mycoplasma ovipneumoniae. ''Microb Genom''. 2024 Aug; '''10''' (8):
CysLT receptor-mediated NOX2 activation is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. Description: Lee, Young Ah, et al. CysLT receptor-mediated NOX2 activation is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. ''Parasites Hosts Dis''. 2024 Aug; '''62''' (3):270-280
Dynamin 2-mediated endocytosis of BLT1 is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. Description: Lee, Young Ah, et al. Dynamin 2-mediated endocytosis of BLT1 is required for IL-8 production in HMC-1 cells induced by Trichomonas vaginalis-derived secretory products. ''Parasites Hosts Dis''. 2024 Aug; '''62''' (3):281-293
Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins. Description: Unneberg, Per, et al. Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins. ''Nat Commun''. 2024 Aug 1; '''15''' (1):6297
Impact of dietary protein and energy levels on fatty acid profile, gut microbiome and cecal metabolome in native growing chickens. Description: Zhou, Luli, et al. Impact of dietary protein and energy levels on fatty acid profile, gut microbiome and cecal metabolome in native growing chickens. ''Poult Sci''. 2024 Aug; '''103''' (8):103917
MDMA-assisted brief cognitive behavioral conjoint therapy for PTSD: Study protocol for a pilot study. Description: Morland, L A, et al. MDMA-assisted brief cognitive behavioral conjoint therapy for PTSD: Study protocol for a pilot study. ''Contemp Clin Trials Commun''. 2024 Aug; '''40''': 101314
Next-Generation Sequencing for Characterizing Respiratory Tract Virome and Improving Detection of Viral Pathogens in Children With Pneumonia. Description: Cui, Song, et al. Next-Generation Sequencing for Characterizing Respiratory Tract Virome and Improving Detection of Viral Pathogens in Children With Pneumonia. ''Influenza Other Respir Viruses''. 2024 Aug; '''18''' (8):e13362
Roseburia intestinalis-derived extracellular vesicles ameliorate colitis by modulating intestinal barrier, microbiome, and inflammatory responses. Description: Han, Hwa Seung, et al. Roseburia intestinalis-derived extracellular vesicles ameliorate colitis by modulating intestinal barrier, microbiome, and inflammatory responses. ''J Extracell Vesicles''. 2024 Aug; '''13''' (8):e12487
The gap-free genome and multi-omics analysis of Citrus reticulata 'Chachi' reveal the dynamics of fruit flavonoid biosynthesis. Description: Zhu, Congyi, et al. The gap-free genome and multi-omics analysis of Citrus reticulata 'Chachi' reveal the dynamics of fruit flavonoid biosynthesis. ''Hortic Res''. 2024 Aug; '''11''' (8):uhae177
The gapless genome assembly and multi-omics analyses unveil a pivotal regulatory mechanism of oil biosynthesis in the olive tree. Description: Lv, Jiaojiao, et al. The gapless genome assembly and multi-omics analyses unveil a pivotal regulatory mechanism of oil biosynthesis in the olive tree. ''Hortic Res''. 2024 Aug; '''11''' (8):uhae168
The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental plants. Description: Zhu, Sheng, et al. The jacktree genome and population genomics provides insights for the mechanisms of the germination obstacle and the conservation of endangered ornamental plants. ''Hortic Res''. 2024 Aug; '''11''' (8):uhae166
Transcriptomic dataset of the development and maturation of the Rhipicephalus microplus ovary. Description: Cossio-Bayugar, Raquel, et al. Transcriptomic dataset of the development and maturation of the Rhipicephalus microplus ovary. ''Data Brief''. 2024 Aug; '''55''': 110661
Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases. Description: Kijima, Soichiro, et al. Complex Genomes of Early Nucleocytoviruses Revealed by Ancient Origins of Viral Aminoacyl-tRNA Synthetases. ''Mol Biol Evol''. 2024 Aug 2; '''41''' (8):
Exploring the Origins and Evolution of Oxygenic and Anoxygenic Photosynthesis in Deeply Branched Cyanobacteriota. Description: Tan, Sha, et al. Exploring the Origins and Evolution of Oxygenic and Anoxygenic Photosynthesis in Deeply Branched Cyanobacteriota. ''Mol Biol Evol''. 2024 Aug 2; '''41''' (8):
SegVir: Reconstruction of Complete Segmented RNA Viral Genomes from Metatranscriptomes. Description: Tang, Xubo, et al. SegVir: Reconstruction of Complete Segmented RNA Viral Genomes from Metatranscriptomes. ''Mol Biol Evol''. 2024 Aug 2; '''41''' (8):
Telomere-to-telomere genome assembly of sorghum. Description: Li, Meng, et al. Telomere-to-telomere genome assembly of sorghum. ''Sci Data''. 2024 Aug 2; '''11''' (1):835
Integrated metabolomic and transcriptomic analysis reveals biosynthesis mechanism of flavone and caffeoylquinic acid in chrysanthemum. Description: Lu, Chenfei, et al. Integrated metabolomic and transcriptomic analysis reveals biosynthesis mechanism of flavone and caffeoylquinic acid in chrysanthemum. ''BMC Genomics''. 2024 Aug 3; '''25''' (1):759
Isolation, genome analysis and tissue localization of Ceratobasidium theobromae, a new encounter pathogen of cassava in Southeast Asia. Description: Gil-Ordonez, Alejandra, et al. Isolation, genome analysis and tissue localization of Ceratobasidium theobromae, a new encounter pathogen of cassava in Southeast Asia. ''Sci Rep''. 2024 Aug 5; '''14''' (1):18139
Selection and Gene Duplication Associated With High-Elevation Diversification in Pristimantis, the Largest Terrestrial Vertebrate Genus. Description: Christodoulides, Nicholas, et al. Selection and Gene Duplication Associated With High-Elevation Diversification in Pristimantis, the Largest Terrestrial Vertebrate Genus. ''Genome Biol Evol''. 2024 Aug 5; '''16''' (8):
Efficient inference of large prokaryotic pangenomes with PanTA. Description: Le, Duc Quang, et al. Efficient inference of large prokaryotic pangenomes with PanTA. ''Genome Biol''. 2024 Aug 6; '''25''' (1):209
Engineering a dysbiotic biofilm model for testing root caries interventions through microbial modulation. Description: Dame-Teixeira, Naile, et al. Engineering a dysbiotic biofilm model for testing root caries interventions through microbial modulation. ''Microbiome''. 2024 Aug 6; '''12''' (1):145
Full-genome sequencing of dozens of new DNA viruses found in Spanish bat feces. Description: Buigues, Jaime, et al. Full-genome sequencing of dozens of new DNA viruses found in Spanish bat feces. ''Microbiol Spectr''. 2024 Aug 6; '''12''' (8):e0067524
Shaping the tripartite symbiosis: are termite microbiome functions directed by the environmentally acquired fungal cultivar? Description: Murphy, Robert M, et al. Shaping the tripartite symbiosis: are termite microbiome functions directed by the environmentally acquired fungal cultivar? ''Anim Microbiome''. 2024 Aug 6; '''6''' (1):44
Bacterial strain sharing between humans, animals, and the environment among urban households. Description: Kim, Daehyun D, et al. Bacterial strain sharing between humans, animals, and the environment among urban households. ''medRxiv''. 2024 Aug 7;
The reference genome of an endangered Asteraceae, Deinandra increscens subsp. villosa, endemic to the Central Coast of California. Description: McEvoy, Susan L, et al. The reference genome of an endangered Asteraceae, Deinandra increscens subsp. villosa, endemic to the Central Coast of California. ''G3 (Bethesda)''. 2024 Aug 7; '''14''' (8):
Characterizing seed dormancy in Epimedium brevicornu Maxim.: Development of novel chill models and determination of dormancy release mechanisms by transcriptomics. Description: Li, Pengshu, et al. Characterizing seed dormancy in Epimedium brevicornu Maxim.: Development of novel chill models and determination of dormancy release mechanisms by transcriptomics. ''BMC Plant Biol''. 2024 Aug 8; '''24''' (1):757
Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins. Description: Xiong, Yi, et al. Proteomic stable isotope probing with an upgraded Sipros algorithm for improved identification and quantification of isotopically labeled proteins. ''Microbiome''. 2024 Aug 8; '''12''' (1):148
Identification of novel cattle (Bos taurus) genes and biological insights of their function in pre-implantation embryo development. Description: Schettini, Gustavo P, et al. Identification of novel cattle (Bos taurus) genes and biological insights of their function in pre-implantation embryo development. ''BMC Genomics''. 2024 Aug 9; '''25''' (1):775
The A226D Mutation of OmpC Leads to Increased Susceptibility to beta-Lactam Antibiotics in Escherichia coli. Description: Zhu, Jiaming, et al. The A226D Mutation of OmpC Leads to Increased Susceptibility to beta-Lactam Antibiotics in Escherichia coli. ''Biology (Basel)''. 2024 Aug 9; '''13''' (8):
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities. Description: Van Uffelen, Alexander, et al. Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities. ''Sci Data''. 2024 Aug 10; '''11''' (1):864
Globally distributed marine Gemmatimonadota have unique genomic potentials. Description: Gong, Xianzhe, et al. Globally distributed marine Gemmatimonadota have unique genomic potentials. ''Microbiome''. 2024 Aug 10; '''12''' (1):149
Horizontal gene transfer and symbiotic microorganisms regulate the adaptive evolution of intertidal algae, Porphyra sense lato. Description: Wang, Wenlei, et al. Horizontal gene transfer and symbiotic microorganisms regulate the adaptive evolution of intertidal algae, Porphyra sense lato. ''Commun Biol''. 2024 Aug 11; '''7''' (1):976
Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes. Description: He, Li, et al. Allopolyploidization from two dioecious ancestors leads to recurrent evolution of sex chromosomes. ''Nat Commun''. 2024 Aug 12; '''15''' (1):6893
A Multipurpose Metallophore and Its Copper Complexes with Diverse Catalytic Antioxidant Properties to Deal with Metal and Oxidative Stress Disorders: A Combined Experimental, Theoretical, and In Vitro Study. Description: Menezes, Lucas B, et al. A Multipurpose Metallophore and Its Copper Complexes with Diverse Catalytic Antioxidant Properties to Deal with Metal and Oxidative Stress Disorders: A Combined Experimental, Theoretical, and In Vitro Study. ''Inorg Chem''. 2024 Aug 12; '''63''' (32):14827-14850
Antibiotic resistance gene dynamics in the commensal infant gut microbiome over the first year of life. Description: Trosvik, Pal, et al. Antibiotic resistance gene dynamics in the commensal infant gut microbiome over the first year of life. ''Sci Rep''. 2024 Aug 12; '''14''' (1):18701
Moringa leaf meal exerts growth benefits in small ruminants through modulating the gastrointestinal microbiome. Description: Nehra, Chitra, et al. Moringa leaf meal exerts growth benefits in small ruminants through modulating the gastrointestinal microbiome. ''Appl Microbiol Biotechnol''. 2024 Aug 12; '''108''' (1):438
Chromosome-level and haplotype-resolved genome assembly of Dracaena cambodiana (Asparagaceae). Description: Chen, Bao-Zheng, et al. Chromosome-level and haplotype-resolved genome assembly of Dracaena cambodiana (Asparagaceae). ''Sci Data''. 2024 Aug 13; '''11''' (1):873
Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae). Description: Chen, Bao-Zheng, et al. Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae). ''Sci Data''. 2024 Aug 13; '''11''' (1):875
Novel microwave assisted carboxymethyl-graphene oxide and its hepatoprotective activity. Description: Tohamy, Hebat-Allah S, et al. Novel microwave assisted carboxymethyl-graphene oxide and its hepatoprotective activity. ''BMC Pharmacol Toxicol''. 2024 Aug 13; '''25''' (1):50
Synergistic pectin deconstruction is a prerequisite for mutualistic interactions between honeybee gut bacteria. Description: Tang, Junbo, et al. Synergistic pectin deconstruction is a prerequisite for mutualistic interactions between honeybee gut bacteria. ''Nat Commun''. 2024 Aug 13; '''15''' (1):6937
SynGAP: a synteny-based toolkit for gene structure annotation polishing. Description: Wu, Fengqi, et al. SynGAP: a synteny-based toolkit for gene structure annotation polishing. ''Genome Biol''. 2024 Aug 13; '''25''' (1):218
De Novo Transcriptome Assembly of Cedar (Cedrela odorata L.) and Differential Gene Expression Involved in Herbivore Resistance. Description: Guzman, Luis Felipe, et al. De Novo Transcriptome Assembly of Cedar (Cedrela odorata L.) and Differential Gene Expression Involved in Herbivore Resistance. ''Curr Issues Mol Biol''. 2024 Aug 14; '''46''' (8):8794-8806
Genomic characterization of the bacterial phylum Candidatus Effluviviacota, a cosmopolitan member of the global seep microbiome. Description: Su, Lei, et al. Genomic characterization of the bacterial phylum Candidatus Effluviviacota, a cosmopolitan member of the global seep microbiome. ''mBio''. 2024 Aug 14; '''15''' (8):e0099224
Microbiome-informed study of the mechanistic basis of methane inhibition by Asparagopsis taxiformis in dairy cattle. Description: Indugu, Nagaraju, et al. Microbiome-informed study of the mechanistic basis of methane inhibition by Asparagopsis taxiformis in dairy cattle. ''mBio''. 2024 Aug 14; '''15''' (8):e0078224
A chromosomal-level genome assembly of Serrognathus titanus Boisduval, 1835 (Coleoptera: Lucanidae). Description: Jin, Jianfeng, et al. A chromosomal-level genome assembly of Serrognathus titanus Boisduval, 1835 (Coleoptera: Lucanidae). ''Sci Data''. 2024 Aug 15; '''11''' (1):888
Genomic characterization of Volzhskoe tick virus (Bunyaviricetes) from a Hyalomma marginatum tick, Hungary. Description: Foldvari, Gabor, et al. Genomic characterization of Volzhskoe tick virus (Bunyaviricetes) from a Hyalomma marginatum tick, Hungary. ''Sci Rep''. 2024 Aug 15; '''14''' (1):18945
Macrogenomics Reveals Effects on Marine Microbial Communities during Oplegnathus punctatus Enclosure Farming. Description: Wang, Lijun, et al. Macrogenomics Reveals Effects on Marine Microbial Communities during Oplegnathus punctatus Enclosure Farming. ''Biology (Basel)''. 2024 Aug 15; '''13''' (8):
Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis. Description: Wang, Cui, et al. Chromosome-level genome assemblies reveal genome evolution of an invasive plant Phragmites australis. ''Commun Biol''. 2024 Aug 17; '''7''' (1):1007
Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis. Description: Kasianova, Aleksandra M, et al. Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis. ''Plant Methods''. 2024 Aug 17; '''20''' (1):128
Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene. Description: Clark, Chase M, et al. Creating and leveraging bespoke large-scale knowledge graphs for comparative genomics and multi-omics drug discovery with SocialGene. ''bioRxiv''. 2024 Aug 19;
Impact of host species on assembly, composition, and functional profiles of phycosphere microbiomes. Description: Roager, Line, et al. Impact of host species on assembly, composition, and functional profiles of phycosphere microbiomes. ''mSystems''. 2024 Aug 20; '''9''' (8):e0058324
Recovery of 240 metagenome-assembled genomes from coastal mariculture environments in South Korea. Description: Seong, Hoon Je, et al. Recovery of 240 metagenome-assembled genomes from coastal mariculture environments in South Korea. ''Sci Data''. 2024 Aug 20; '''11''' (1):902
Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73's RNA binding capacity. Description: Shen, Xuefeng, et al. Spermidine augments salt stress resilience in rice roots potentially by enhancing OsbZIP73's RNA binding capacity. ''BMC Plant Biol''. 2024 Aug 20; '''24''' (1):786
The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution. Description: Li, Xinghua, et al. The grasshopper genome reveals long-term gene content conservation of the X Chromosome and temporal variation in X Chromosome evolution. ''Genome Res''. 2024 Aug 20; '''34''' (7):997-1007
Variability in n-caprylate and n-caproate producing microbiomes in reactors with in-line product extraction. Description: Spirito, Catherine M, et al. Variability in n-caprylate and n-caproate producing microbiomes in reactors with in-line product extraction. ''mSystems''. 2024 Aug 20; '''9''' (8):e0041624
Viral and thermal lysis facilitates transmission of antibiotic resistance genes during composting. Description: Ai, Chaofan, et al. Viral and thermal lysis facilitates transmission of antibiotic resistance genes during composting. ''Appl Environ Microbiol''. 2024 Aug 21; '''90''' (8):e0069524
Genetic diversity and cross-species transmissibility of bat-associated picornaviruses from Spain. Description: Carrascosa-Saez, Marc, et al. Genetic diversity and cross-species transmissibility of bat-associated picornaviruses from Spain. ''Virol J''. 2024 Aug 22; '''21''' (1):193
Integrated-omics analysis with explainable deep networks on pathobiology of infant bronchiolitis. Description: Ooka, Tadao, et al. Integrated-omics analysis with explainable deep networks on pathobiology of infant bronchiolitis. ''NPJ Syst Biol Appl''. 2024 Aug 22; '''10''' (1):93
Molecular characterization of PSEUDO RESPONSE REGULATOR family in Rosaceae and function of PbPRR59a and PbPRR59b in flowering regulation. Description: Liu, Zhe, et al. Molecular characterization of PSEUDO RESPONSE REGULATOR family in Rosaceae and function of PbPRR59a and PbPRR59b in flowering regulation. ''BMC Genomics''. 2024 Aug 22; '''25''' (1):794
SoxC and MmpReg promote blastema formation in whole-body regeneration of fragmenting potworms Enchytraeus japonensis. Description: Fujita, Toshiyuki, et al. SoxC and MmpReg promote blastema formation in whole-body regeneration of fragmenting potworms Enchytraeus japonensis. ''Nat Commun''. 2024 Aug 22; '''15''' (1):6659
Genomic Sequencing and Functional Analysis of the Ex-Type Strain of Malbranchea zuffiana. Description: Granados-Casas, Alan Omar, et al. Genomic Sequencing and Functional Analysis of the Ex-Type Strain of Malbranchea zuffiana. ''J Fungi (Basel)''. 2024 Aug 24; '''10''' (9):
Host specificity and cophylogeny in the "animal-gut bacteria-phage" tripartite system. Description: Feng, Ye, et al. Host specificity and cophylogeny in the "animal-gut bacteria-phage" tripartite system. ''NPJ Biofilms Microbiomes''. 2024 Aug 27; '''10''' (1):72
Taxonomy of introns and the evolution of minor introns. Description: Olthof, Anouk M, et al. Taxonomy of introns and the evolution of minor introns. ''Nucleic Acids Res''. 2024 Aug 27; '''52''' (15):9247-9266
A chromosome-level genome assembly of the gall maker pest inquiline, Diomorus aiolomorphi Kamijo (Hymenoptera: Torymidae). Description: Yuan, Ruizhong, et al. A chromosome-level genome assembly of the gall maker pest inquiline, Diomorus aiolomorphi Kamijo (Hymenoptera: Torymidae). ''Sci Data''. 2024 Aug 29; '''11''' (1):944
Effects of Defatted Rice Bran-Fortified Bread on the Gut Microbiota Composition of Healthy Adults With Low Dietary Fiber Intake: Protocol for a Crossover Randomized Controlled Trial. Description: Ng, Hwei Min, et al. Effects of Defatted Rice Bran-Fortified Bread on the Gut Microbiota Composition of Healthy Adults With Low Dietary Fiber Intake: Protocol for a Crossover Randomized Controlled Trial. ''JMIR Res Protoc''. 2024 Aug 29; '''13''': e59227
The role of halophyte-induced saline fertile islands in soil microbial biogeochemical cycling across arid ecosystems. Description: Zhao, Shuai, et al. The role of halophyte-induced saline fertile islands in soil microbial biogeochemical cycling across arid ecosystems. ''Commun Biol''. 2024 Aug 29; '''7''' (1):1061
Genomic insights on carotenoid synthesis by extremely halophilic archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2 and Halogeometricum borinquense E3 isolated from the solar salterns of India. Description: Nagar, Devika N, et al. Genomic insights on carotenoid synthesis by extremely halophilic archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2 and Halogeometricum borinquense E3 isolated from the solar salterns of India. ''Sci Rep''. 2024 Aug 30; '''14''' (1):20214
The mechanism of bile acid metabolism regulating lipid metabolism and inflammatory response in T2DM through the gut-liver axis. Description: Wang, Yan, et al. The mechanism of bile acid metabolism regulating lipid metabolism and inflammatory response in T2DM through the gut-liver axis. ''Heliyon''. 2024 Aug 30; '''10''' (16):e35421
A catalog of small proteins from the global microbiome. Description: Duan, Yiqian, et al. A catalog of small proteins from the global microbiome. ''Nat Commun''. 2024 Aug 31; '''15''' (1):7563
Metagenome reveals the midgut microbial community of Haemaphysalis qinghaiensis ticks collected from yaks and Tibetan sheep. Description: Zhang, Ying, et al. Metagenome reveals the midgut microbial community of Haemaphysalis qinghaiensis ticks collected from yaks and Tibetan sheep. ''Parasit Vectors''. 2024 Aug 31; '''17''' (1):370
Metagenomic analysis of rats with diarrhea treated with mixed probiotics: response to consecutive and alternate-hour supplementation. Description: Wang, Anqi, et al. Metagenomic analysis of rats with diarrhea treated with mixed probiotics: response to consecutive and alternate-hour supplementation. ''Transl Pediatr''. 2024 Aug 31; '''13''' (8):1336-1358
Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration. Description: Yang, Meixin, et al. Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration. ''Adv Sci (Weinh)''. 2024 Sep; '''11''' (36):e2401899
A taxon-rich and genome-scale phylogeny of Opisthokonta. Description: Liu, Hongyue, et al. A taxon-rich and genome-scale phylogeny of Opisthokonta. ''PLoS Biol''. 2024 Sep; '''22''' (9):e3002794
Birth of protein folds and functions in the virome. Description: Nomburg, Jason, et al. Birth of protein folds and functions in the virome. ''Nature''. 2024 Sep; '''633''' (8030):710-717
Breed-Driven Microbiome Heterogeneity Regulates Intestinal Stem Cell Proliferation via Lactobacillus-Lactate-GPR81 Signaling. Description: Wu, Haiqin, et al. Breed-Driven Microbiome Heterogeneity Regulates Intestinal Stem Cell Proliferation via Lactobacillus-Lactate-GPR81 Signaling. ''Adv Sci (Weinh)''. 2024 Sep; '''11''' (33):e2400058
Chromosome-level genome sequencing and multi-omics of the Hungarian White Goose (Anser anser domesticus) reveals novel miRNA-mRNA regulation mechanism of waterfowl feather follicle development. Description: Zhou, Yuxuan, et al. Chromosome-level genome sequencing and multi-omics of the Hungarian White Goose (Anser anser domesticus) reveals novel miRNA-mRNA regulation mechanism of waterfowl feather follicle development. ''Poult Sci''. 2024 Sep; '''103''' (9):103933
Diverse signatures of convergent evolution in cactus-associated yeasts. Description: Goncalves, Carla, et al. Diverse signatures of convergent evolution in cactus-associated yeasts. ''PLoS Biol''. 2024 Sep; '''22''' (9):e3002832
Enhanced nitrate reduction in hypotrophic waters with integrated photocatalysis and biodegradation. Description: Xue, Bingjie, et al. Enhanced nitrate reduction in hypotrophic waters with integrated photocatalysis and biodegradation. ''Environ Sci Ecotechnol''. 2024 Sep; '''21''': 100390
Evaluation of commercial RNA extraction kits for long-read metatranscriptomics in soil. Description: Barber, Daniel G, et al. Evaluation of commercial RNA extraction kits for long-read metatranscriptomics in soil. ''Microb Genom''. 2024 Sep; '''10''' (9):
Genomic data provides insights into the evolutionary history and adaptive differentiation of two tetraploid strawberries. Description: Lin, Hanyang, et al. Genomic data provides insights into the evolutionary history and adaptive differentiation of two tetraploid strawberries. ''Hortic Res''. 2024 Sep; '''11''' (9):uhae194
Global marine microbial diversity and its potential in bioprospecting. Description: Chen, Jianwei, et al. Global marine microbial diversity and its potential in bioprospecting. ''Nature''. 2024 Sep; '''633''' (8029):371-379
Identification of a Novel Parvovirus in the Arctic Wolf (Canis lupus arctos). Description: Dai, Ziyuan, et al. Identification of a Novel Parvovirus in the Arctic Wolf (Canis lupus arctos). ''Pol J Microbiol''. 2024 Sep 1; '''73''' (3):395-401
Intensified river salinization alters nitrogen-cycling microbial communities in arid and semi-arid regions of China. Description: Pang, Qingqing, et al. Intensified river salinization alters nitrogen-cycling microbial communities in arid and semi-arid regions of China. ''Eco Environ Health''. 2024 Sep; '''3''' (3):271-280
Mapping glycoprotein structure reveals Flaviviridae evolutionary history. Description: Mifsud, Jonathon C O, et al. Mapping glycoprotein structure reveals Flaviviridae evolutionary history. ''Nature''. 2024 Sep; '''633''' (8030):695-703
Metagenomic functional profiling: to sketch or not to sketch? Description: Hera, Mahmudur Rahman, et al. Metagenomic functional profiling: to sketch or not to sketch? ''Bioinformatics''. 2024 Sep 1; '''40''' (Suppl 2):ii165-ii173
Multi-omics revealed the mechanism of feed efficiency in sheep by the combined action of the host and rumen microbiota. Description: Zhou, Guangchen, et al. Multi-omics revealed the mechanism of feed efficiency in sheep by the combined action of the host and rumen microbiota. ''Anim Nutr''. 2024 Sep; '''18''': 367-379
Origin and evolution of the bread wheat D genome. Description: Cavalet-Giorsa, Emile, et al. Origin and evolution of the bread wheat D genome. ''Nature''. 2024 Sep; '''633''' (8031):848-855
The discovery of novel variants reveals the genetic diversity and potential origin of Seoul orthohantavirus. Description: Kuang, Guopeng, et al. The discovery of novel variants reveals the genetic diversity and potential origin of Seoul orthohantavirus. ''PLoS Negl Trop Dis''. 2024 Sep; '''18''' (9):e0012478
The ribosome lowers the entropic penalty of protein folding. Description: Streit, Julian O, et al. The ribosome lowers the entropic penalty of protein folding. ''Nature''. 2024 Sep; '''633''' (8028):232-239
UDP-glycosyltransferase UGT96C10 functions as a novel detoxification factor for conjugating the activated dinitrotoluene sulfonate in switchgrass. Description: Su, Kunlong, et al. UDP-glycosyltransferase UGT96C10 functions as a novel detoxification factor for conjugating the activated dinitrotoluene sulfonate in switchgrass. ''Plant Biotechnol J''. 2024 Sep; '''22''' (9):2530-2540
Structures of Native Doublet Microtubules from Trichomonas vaginalis Reveal Parasite-Specific Proteins as Potential Drug Targets. Description: Stevens, Alexander, et al. Structures of Native Doublet Microtubules from Trichomonas vaginalis Reveal Parasite-Specific Proteins as Potential Drug Targets. ''Res Sq''. 2024 Sep 2;
Comparative Genomics Uncovers the Evolutionary Dynamics of Detoxification and Insecticide Target Genes Across 11 Phlebotomine Sand Flies. Description: Charamis, Jason, et al. Comparative Genomics Uncovers the Evolutionary Dynamics of Detoxification and Insecticide Target Genes Across 11 Phlebotomine Sand Flies. ''Genome Biol Evol''. 2024 Sep 3; '''16''' (9):
Influence of thinning on carbon storage mediated by soil physicochemical properties and microbial community composition in large Chinese fir timber plantation. Description: Huang, Lei, et al. Influence of thinning on carbon storage mediated by soil physicochemical properties and microbial community composition in large Chinese fir timber plantation. ''Carbon Balance Manag''. 2024 Sep 3; '''19''' (1):29
A chromosome-level genome assembly of the disco clam, Ctenoides ales. Description: A chromosome-level genome assembly of the disco clam, Ctenoides ales. ''''. 2024 Sep 4; '''14''' (9):
Chromosome-scale genome assembly and annotation of the tetraploid potato cultivar Diacol Capiro adapted to the Andean region. Description: Reyes-Herrera, Paula H, et al. Chromosome-scale genome assembly and annotation of the tetraploid potato cultivar Diacol Capiro adapted to the Andean region. ''G3 (Bethesda)''. 2024 Sep 4; '''14''' (9):
Multiomic Insights into Human Health: Gut Microbiomes of Hunter-Gatherer, Agropastoral, and Western Urban Populations. Description: Singh, Harinder, et al. Multiomic Insights into Human Health: Gut Microbiomes of Hunter-Gatherer, Agropastoral, and Western Urban Populations. ''bioRxiv''. 2024 Sep 4;
Strain heterogeneity in a non-pathogenic Aspergillus fungus highlights factors associated with virulence. Description: Rinker, David C, et al. Strain heterogeneity in a non-pathogenic Aspergillus fungus highlights factors associated with virulence. ''Commun Biol''. 2024 Sep 4; '''7''' (1):1082
The first Chromosomal-level genome assembly of Sageretia thea using Nanopore long reads and Pore-C technology. Description: Jo, Jihoon, et al. The first Chromosomal-level genome assembly of Sageretia thea using Nanopore long reads and Pore-C technology. ''Sci Data''. 2024 Sep 4; '''11''' (1):959
Comparative Genomics of Fungi in Nectriaceae Reveals Their Environmental Adaptation and Conservation Strategies. Description: Rissi, Daniel Vasconcelos, et al. Comparative Genomics of Fungi in Nectriaceae Reveals Their Environmental Adaptation and Conservation Strategies. ''J Fungi (Basel)''. 2024 Sep 5; '''10''' (9):
A probiotic Limosilactobacillus fermentum GR-3 mitigates colitis-associated tumorigenesis in mice via modulating gut microbiome. Description: Zhou, Tuoyu, et al. A probiotic Limosilactobacillus fermentum GR-3 mitigates colitis-associated tumorigenesis in mice via modulating gut microbiome. ''NPJ Sci Food''. 2024 Sep 6; '''8''' (1):61
Disentangling abiotic and biotic effects of treated wastewater on stream biofilm resistomes enables the discovery of a new planctomycete beta-lactamase. Description: Attrah, Mustafa, et al. Disentangling abiotic and biotic effects of treated wastewater on stream biofilm resistomes enables the discovery of a new planctomycete beta-lactamase. ''Microbiome''. 2024 Sep 6; '''12''' (1):164
Metagenomic analysis reveals high diversity of gut viromes in yaks (Bos grunniens) from the Qinghai-Tibet Plateau. Description: Lu, Xiang, et al. Metagenomic analysis reveals high diversity of gut viromes in yaks (Bos grunniens) from the Qinghai-Tibet Plateau. ''Commun Biol''. 2024 Sep 6; '''7''' (1):1097
Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses. Description: Buddle, Sarah, et al. Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses. ''Genome Med''. 2024 Sep 9; '''16''' (1):111
Genome-centric metagenomes unveiling the hidden resistome in an anchialine cave. Description: Vojvoda Zeljko, Tanja, et al. Genome-centric metagenomes unveiling the hidden resistome in an anchialine cave. ''Environ Microbiome''. 2024 Sep 9; '''19''' (1):67
The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis. Description: Chen, Rong, et al. The genomes of seven economic Caesalpinioideae trees provide insights into polyploidization history and secondary metabolite biosynthesis. ''Plant Commun''. 2024 Sep 9; '''5''' (9):100944
Social wasp-associated Tsukamurella sp. strains showed promising biosynthetic and bioactive potential for discovery of novel compounds. Description: Rojas-Villalta, Dorian, et al. Social wasp-associated Tsukamurella sp. strains showed promising biosynthetic and bioactive potential for discovery of novel compounds. ''Sci Rep''. 2024 Sep 10; '''14''' (1):21118
Strategy to mitigate substrate inhibition in wastewater treatment systems. Description: Li, Beiying, et al. Strategy to mitigate substrate inhibition in wastewater treatment systems. ''Nat Commun''. 2024 Sep 10; '''15''' (1):7920
The NEREA Augmented Observatory: an integrative approach to marine coastal ecology. Description: Campese, Lucia, et al. The NEREA Augmented Observatory: an integrative approach to marine coastal ecology. ''Sci Data''. 2024 Sep 10; '''11''' (1):989
Metagenomic profiling of gut microbiota in Fall Armyworm (Spodoptera frugiperda) larvae fed on different host plants. Description: Wu, Li-Hong, et al. Metagenomic profiling of gut microbiota in Fall Armyworm (Spodoptera frugiperda) larvae fed on different host plants. ''BMC Microbiol''. 2024 Sep 11; '''24''' (1):337
Comparative analysis of the genomes and aflatoxin production patterns of three species within the Aspergillus section Flavi reveals an undescribed chemotype and habitat-specific genetic traits. Description: Schamann, Alexandra, et al. Comparative analysis of the genomes and aflatoxin production patterns of three species within the Aspergillus section Flavi reveals an undescribed chemotype and habitat-specific genetic traits. ''Commun Biol''. 2024 Sep 13; '''7''' (1):1134
Comparative Genomic Analyses of Colletotrichum lindemuthianum Pathotypes with Different Virulence Levels and Lifestyles. Description: Morelos-Martinez, Ma Irene, et al. Comparative Genomic Analyses of Colletotrichum lindemuthianum Pathotypes with Different Virulence Levels and Lifestyles. ''J Fungi (Basel)''. 2024 Sep 13; '''10''' (9):
A chromosome-level genome assembly of the Brontispa longissima. Description: Li, Zaiyuan, et al. A chromosome-level genome assembly of the Brontispa longissima. ''Sci Data''. 2024 Sep 14; '''11''' (1):1002
Landscape of the metaplasmidome of deep-sea hydrothermal vents located at Arctic Mid-Ocean Ridges in the Norwegian-Greenland Sea: ecological insights from comparative analysis of plasmid identification tools. Description: Ciuchcinski, Karol, et al. Landscape of the metaplasmidome of deep-sea hydrothermal vents located at Arctic Mid-Ocean Ridges in the Norwegian-Greenland Sea: ecological insights from comparative analysis of plasmid identification tools. ''FEMS Microbiol Ecol''. 2024 Sep 14; '''100''' (10):
Metformin increases gut multidrug resistance genes in type 2 diabetes, potentially linked to Escherichia coli. Description: Kim, Han-Bin, et al. Metformin increases gut multidrug resistance genes in type 2 diabetes, potentially linked to Escherichia coli. ''Sci Rep''. 2024 Sep 14; '''14''' (1):21480
Analysis of vaginal flora diversity and study on the role of Porphyromonas asaccharolytica in promoting IL-1beta in regulating cervical cancer. Description: Bai, Bing, et al. Analysis of vaginal flora diversity and study on the role of Porphyromonas asaccharolytica in promoting IL-1beta in regulating cervical cancer. ''Sci Rep''. 2024 Sep 17; '''14''' (1):21731
Demographic and zoological drivers of infectome diversity in companion cats with ascites. Description: Sun, Yankuo, et al. Demographic and zoological drivers of infectome diversity in companion cats with ascites. ''mSystems''. 2024 Sep 17; '''9''' (9):e0063624
Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments. Description: Lezcano, Maria Angeles, et al. Hyperexpansion of genetic diversity and metabolic capacity of extremophilic bacteria and archaea in ancient Andean lake sediments. ''Microbiome''. 2024 Sep 17; '''12''' (1):176
Pangenomic landscapes shape performances of a synthetic genetic circuit across Stutzerimonas species. Description: Chan, Dennis Tin Chat, et al. Pangenomic landscapes shape performances of a synthetic genetic circuit across Stutzerimonas species. ''mSystems''. 2024 Sep 17; '''9''' (9):e0084924
Profiles and interactions of gut microbiome and intestinal microRNAs in pediatric Crohn's disease. Description: Lv, Yao, et al. Profiles and interactions of gut microbiome and intestinal microRNAs in pediatric Crohn's disease. ''mSystems''. 2024 Sep 17; '''9''' (9):e0078324
Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures. Description: Song, Yidong, et al. Accurately predicting enzyme functions through geometric graph learning on ESMFold-predicted structures. ''Nat Commun''. 2024 Sep 18; '''15''' (1):8180
A haplotype-resolved genome assembly of Coptis teeta, an endangered plant of significant medicinal value. Description: Wang, Ya, et al. A haplotype-resolved genome assembly of Coptis teeta, an endangered plant of significant medicinal value. ''Sci Data''. 2024 Sep 18; '''11''' (1):1012
Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria). Description: Miao, Ke, et al. Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria). ''Sci Data''. 2024 Sep 18; '''11''' (1):1011
High-quality chromosome-level genomic insights into molecular adaptation to low-temperature stress in Madhuca longifolia in southern subtropical China. Description: Wang, Shuyu, et al. High-quality chromosome-level genomic insights into molecular adaptation to low-temperature stress in Madhuca longifolia in southern subtropical China. ''BMC Genomics''. 2024 Sep 18; '''25''' (1):877
Long-read de novo genome assembly of Gulf toadfish (Opsanus beta). Description: Kron, Nicholas S, et al. Long-read de novo genome assembly of Gulf toadfish (Opsanus beta). ''BMC Genomics''. 2024 Sep 18; '''25''' (1):871
Novel, active, and uncultured hydrocarbon-degrading microbes in the ocean. Description: Howe, Kathryn L, et al. Novel, active, and uncultured hydrocarbon-degrading microbes in the ocean. ''Appl Environ Microbiol''. 2024 Sep 18; '''90''' (9):e0122424
The tal gene of lactococcal bacteriophage TP901-1 is involved in DNA release following host adsorption. Description: Ruiz-Cruz, Sofia, et al. The tal gene of lactococcal bacteriophage TP901-1 is involved in DNA release following host adsorption. ''Appl Environ Microbiol''. 2024 Sep 18; '''90''' (9):e0069424
Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis. Description: van der Ploeg, G R, et al. Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis. ''NPJ Biofilms Microbiomes''. 2024 Sep 19; '''10''' (1):89
Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores. Description: Li, Qing, et al. Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores. ''Microbiome''. 2024 Sep 19; '''12''' (1):178
Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis. Description: Abdel-Glil, Mostafa Y, et al. Chromosome-level genome assembly of Tritrichomonas foetus, the causative agent of Bovine Trichomonosis. ''Sci Data''. 2024 Sep 20; '''11''' (1):1030
Dietary fibers boost gut microbiota-produced B vitamin pool and alter host immune landscape. Description: Grant, Erica T, et al. Dietary fibers boost gut microbiota-produced B vitamin pool and alter host immune landscape. ''Microbiome''. 2024 Sep 23; '''12''' (1):179
MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data. Description: Bosilj, Martin, et al. MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data. ''Brief Bioinform''. 2024 Sep 23; '''25''' (6):
The genomes of Australian wild limes. Description: Nakandala, Upuli, et al. The genomes of Australian wild limes. ''Plant Mol Biol''. 2024 Sep 24; '''114''' (5):102
Dynamics of Spike-Specific Neutralizing Antibodies Across Five-Year Emerging SARS-CoV-2 Variants of Concern Reveal Conserved Epitopes that Protect Against Severe COVID-19. Description: Zayou, Latifa, et al. Dynamics of Spike-Specific Neutralizing Antibodies Across Five-Year Emerging SARS-CoV-2 Variants of Concern Reveal Conserved Epitopes that Protect Against Severe COVID-19. ''bioRxiv''. 2024 Sep 25;
Identification and characterization of archaeal-type FAD synthase as a novel tractable drug target from the parasitic protozoa Entamoeba histolytica. Description: Wulansari, Dewi, et al. Identification and characterization of archaeal-type FAD synthase as a novel tractable drug target from the parasitic protozoa Entamoeba histolytica. ''mSphere''. 2024 Sep 25; '''9''' (9):e0034724
In Search of Covalency Measure of Gd(III)-Ligand Interactions. Description: Janicki, Rafal, et al. In Search of Covalency Measure of Gd(III)-Ligand Interactions. ''J Phys Chem Lett''. 2024 Sep 26; '''15''' (38):9723-9737
RNAseq-Based Carboxylesterase Nl-EST1 Gene Expression Plasticity Identification and Its Potential Involvement in Fenobucarb Resistance in the Brown Planthopper Nilaparvata lugens. Description: Khan, Murtaza, et al. RNAseq-Based Carboxylesterase Nl-EST1 Gene Expression Plasticity Identification and Its Potential Involvement in Fenobucarb Resistance in the Brown Planthopper Nilaparvata lugens. ''Insects''. 2024 Sep 26; '''15''' (10):
Characterization of the Virome Associated with the Ubiquitous Two-Spotted Spider Mite, Tetranychus urticae. Description: Ferreira, Lucas Yago Melo, et al. Characterization of the Virome Associated with the Ubiquitous Two-Spotted Spider Mite, Tetranychus urticae. ''Viruses''. 2024 Sep 27; '''16''' (10):
Conservation of molecular responses upon viral infection in the non-vascular plant Marchantia polymorpha. Description: Ros-Moner, Eric, et al. Conservation of molecular responses upon viral infection in the non-vascular plant Marchantia polymorpha. ''Nat Commun''. 2024 Sep 27; '''15''' (1):8326
Multi-View Integrative Approach For Imputing Short-Chain Fatty Acids and Identifying Key factors predicting Blood SCFA. Description: Liu, Anqi, et al. Multi-View Integrative Approach For Imputing Short-Chain Fatty Acids and Identifying Key factors predicting Blood SCFA. ''bioRxiv''. 2024 Sep 27;
Evolutionary origin and population diversity of a cryptic hybrid pathogen. Description: Steenwyk, Jacob L, et al. Evolutionary origin and population diversity of a cryptic hybrid pathogen. ''Nat Commun''. 2024 Sep 28; '''15''' (1):8412
Chromosome-level genome assembly and annotation of Clanis bilineata tsingtauica Mell (Lepidoptera: Sphingidae). Description: Yan, Yulu, et al. Chromosome-level genome assembly and annotation of Clanis bilineata tsingtauica Mell (Lepidoptera: Sphingidae). ''Sci Data''. 2024 Sep 30; '''11''' (1):1062
First Detection and Characterization of Smacovirus in the Human Vagina in Two Sequential Samples over a Twelve-Day Interval. Description: da Costa, Antonio Charlys, et al. First Detection and Characterization of Smacovirus in the Human Vagina in Two Sequential Samples over a Twelve-Day Interval. ''Viruses''. 2024 Sep 30; '''16''' (10):
MBCN: A novel reference database for Effcient Metagenomic analysis of human gut microbiome. Description: Zheng, Bo, et al. MBCN: A novel reference database for Effcient Metagenomic analysis of human gut microbiome. ''Heliyon''. 2024 Sep 30; '''10''' (18):e37422
Stress triggers gut dysbiosis via CRH-CRHR1-mitochondria pathway. Description: Zhang, Yiming, et al. Stress triggers gut dysbiosis via CRH-CRHR1-mitochondria pathway. ''NPJ Biofilms Microbiomes''. 2024 Sep 30; '''10''' (1):93
A diel multi-tissue genome-scale metabolic model of Vitis vinifera. Description: Sampaio, Marta, et al. A diel multi-tissue genome-scale metabolic model of Vitis vinifera. ''PLoS Comput Biol''. 2024 Oct; '''20''' (10):e1012506
Characterization of regeneration initiating cells during Xenopus laevis tail regeneration. Description: Sindelka, Radek, et al. Characterization of regeneration initiating cells during Xenopus laevis tail regeneration. ''Genome Biol''. 2024 Oct 1; '''25''' (1):251
Genomic and biogeographic characterisation of the novel prasinovirus Mantoniella tinhauana virus 1. Description: Rey Redondo, Elvira, et al. Genomic and biogeographic characterisation of the novel prasinovirus Mantoniella tinhauana virus 1. ''Environ Microbiol Rep''. 2024 Oct; '''16''' (5):e70020
Genomic variation across distribution of Micro-Tom, a model cultivar of tomato (Solanum lycopersicum). Description: Nagasaki, Hideki, et al. Genomic variation across distribution of Micro-Tom, a model cultivar of tomato (Solanum lycopersicum). ''DNA Res''. 2024 Oct 1; '''31''' (5):
High-quality genome of a novel Thermosynechococcaceae species from Namibia and characterization of its protein expression patterns at elevated temperatures. Description: Arnold, Nathanael D, et al. High-quality genome of a novel Thermosynechococcaceae species from Namibia and characterization of its protein expression patterns at elevated temperatures. ''Microbiologyopen''. 2024 Oct; '''13''' (5):e70000
Late-life dietary folate restriction reduces biosynthesis without compromising healthspan in mice. Description: Blank, Heidi M, et al. Late-life dietary folate restriction reduces biosynthesis without compromising healthspan in mice. ''Life Sci Alliance''. 2024 Oct; '''7''' (10):
Local cryptic diversity in salinity adaptation mechanisms in the wild outcrossing Brassica fruticulosa. Description: Busoms, Silvia, et al. Local cryptic diversity in salinity adaptation mechanisms in the wild outcrossing Brassica fruticulosa. ''Proc Natl Acad Sci U S A''. 2024 Oct; '''121''' (40):e2407821121
Metagenome sequencing and 982 microbial genomes from Kermadec and Diamantina Trenches sediments. Description: Li, Yingdong, et al. Metagenome sequencing and 982 microbial genomes from Kermadec and Diamantina Trenches sediments. ''Sci Data''. 2024 Oct 1; '''11''' (1):1067
Microbial genetic potential differs among cryospheric habitats of the Damma glacier. Description: Feng, Maomao, et al. Microbial genetic potential differs among cryospheric habitats of the Damma glacier. ''Microb Genom''. 2024 Oct; '''10''' (10):
Microbial metabolism affects the antibiotic resistome in the intestine of laying hens. Description: Yuan, Yilin, et al. Microbial metabolism affects the antibiotic resistome in the intestine of laying hens. ''Poult Sci''. 2024 Oct; '''103''' (10):104138
Molecular Characterization of Noroviruses Causing Acute Gastroenteritis Outbreaks among US Military Recruits, 2013-2023. Description: Anderson, Melissa S, et al. Molecular Characterization of Noroviruses Causing Acute Gastroenteritis Outbreaks among US Military Recruits, 2013-2023. ''Emerg Infect Dis''. 2024 Oct; '''30''' (14):71-79
Parallel loss of sexual reproduction in field populations of a brown alga sheds light on the mechanisms underlying the emergence of asexuality. Description: Hoshino, Masakazu, et al. Parallel loss of sexual reproduction in field populations of a brown alga sheds light on the mechanisms underlying the emergence of asexuality. ''Nat Ecol Evol''. 2024 Oct; '''8''' (10):1916-1932
Photomorphogenesis of Myxococcus macrosporus: new insights for light-regulation of cell development. Description: Graniczkowska, Kinga B, et al. Photomorphogenesis of Myxococcus macrosporus: new insights for light-regulation of cell development. ''Photochem Photobiol Sci''. 2024 Oct; '''23''' (10):1857-1870
Seasonal variations in composition and function of gut microbiota in grazing yaks: Implications for adaptation to dietary shift on the Qinghai-Tibet plateau. Description: Wang, Xungang, et al. Seasonal variations in composition and function of gut microbiota in grazing yaks: Implications for adaptation to dietary shift on the Qinghai-Tibet plateau. ''Ecol Evol''. 2024 Oct; '''14''' (10):e70337
Tetraspanin-enriched microdomains play an important role in pathogenesis in the protozoan parasite Entamoeba histolytica. Description: Jiang, Han, et al. Tetraspanin-enriched microdomains play an important role in pathogenesis in the protozoan parasite Entamoeba histolytica. ''PLoS Pathog''. 2024 Oct; '''20''' (10):e1012151
VirTAXA: enhancing RNA virus taxonomic classification with remote homology search and tree-based validation. Description: Zhu, Yilin, et al. VirTAXA: enhancing RNA virus taxonomic classification with remote homology search and tree-based validation. ''Bioinformatics''. 2024 Oct 1; '''40''' (10):
A snapshot of the Physcomitrella N-terminome reveals N-terminal methylation of organellar proteins. Description: Hoernstein, Sebastian N W, et al. A snapshot of the Physcomitrella N-terminome reveals N-terminal methylation of organellar proteins. ''Plant Cell Rep''. 2024 Oct 3; '''43''' (10):250
Characterization of larval gut microbiota of two endoparasitoid wasps associated with their common host, Plutella xylostella (Linnaeus) (Lepidoptera: Plutellidae). Description: Hu, Na-Na, et al. Characterization of larval gut microbiota of two endoparasitoid wasps associated with their common host, Plutella xylostella (Linnaeus) (Lepidoptera: Plutellidae). ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0120824
Chromosome-level genome provides insights into evolution and diving adaptability in the vulnerable common pochard (Aythya ferina). Description: Xia, Tian, et al. Chromosome-level genome provides insights into evolution and diving adaptability in the vulnerable common pochard (Aythya ferina). ''BMC Genomics''. 2024 Oct 3; '''25''' (1):927
Emergence of a novel sequence type carbapenem-resistant hypervirulent Klebsiella pneumoniae ST6417 harboring bla(NDM-5) on the lncX3 plasmid. Description: Liu, Junnian, et al. Emergence of a novel sequence type carbapenem-resistant hypervirulent Klebsiella pneumoniae ST6417 harboring bla(NDM-5) on the lncX3 plasmid. ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0098424
Exploring pangenomic diversity and CRISPR-Cas evasion potential in jumbo phages: a comparative genomics study. Description: Magar, Sharayu, et al. Exploring pangenomic diversity and CRISPR-Cas evasion potential in jumbo phages: a comparative genomics study. ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0420023
The environmental microbial retrieving assessment of cell-processing facilities for cell therapy in a hospital laboratory. Description: Lian, Jiabian, et al. The environmental microbial retrieving assessment of cell-processing facilities for cell therapy in a hospital laboratory. ''Microbiol Spectr''. 2024 Oct 3; '''12''' (10):e0125724
Analyzing Antibiotic Resistance in Bacteria from Wastewater in Pakistan Using Whole-Genome Sequencing. Description: Sattar, Fazal, et al. Analyzing Antibiotic Resistance in Bacteria from Wastewater in Pakistan Using Whole-Genome Sequencing. ''Antibiotics (Basel)''. 2024 Oct 4; '''13''' (10):
Biodiversity of mudflat intertidal viromes along the Chinese coasts. Description: Ji, Mengzhi, et al. Biodiversity of mudflat intertidal viromes along the Chinese coasts. ''Nat Commun''. 2024 Oct 4; '''15''' (1):8611
Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants. Description: Leal-Dutra, Caio A, et al. Genomic Signatures of Domestication in a Fungus Obligately Farmed by Leafcutter Ants. ''Mol Biol Evol''. 2024 Oct 4; '''41''' (10):
Large expansion of plasma commensal viruses is associated with SIV pathogenesis in Macaca leonina. Description: Li, Yanpeng, et al. Large expansion of plasma commensal viruses is associated with SIV pathogenesis in Macaca leonina. ''Sci Adv''. 2024 Oct 4; '''10''' (40):eadq1152
Leveraging transcriptome sequence read archives for virus detection in wild and colony populations of triatomines (Hemiptera: Reduviidae: Triatominae). Description: Bourke, Brian P, et al. Leveraging transcriptome sequence read archives for virus detection in wild and colony populations of triatomines (Hemiptera: Reduviidae: Triatominae). ''Arch Virol''. 2024 Oct 4; '''169''' (10):215
VirID: Beyond Virus Discovery-An Integrated Platform for Comprehensive RNA Virus Characterization. Description: Yang, Ziyue, et al. VirID: Beyond Virus Discovery-An Integrated Platform for Comprehensive RNA Virus Characterization. ''Mol Biol Evol''. 2024 Oct 4; '''41''' (10):
Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic. Description: Gornard, Samuel, et al. Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic. ''BMC Genomics''. 2024 Oct 7; '''25''' (1):940
Comparative genomics of Metarhizium brunneum strains V275 and ARSEF 4556: unraveling intraspecies diversity. Description: Kortsinoglou, Alexandra M, et al. Comparative genomics of Metarhizium brunneum strains V275 and ARSEF 4556: unraveling intraspecies diversity. ''G3 (Bethesda)''. 2024 Oct 7; '''14''' (10):
Diversity and characteristics of the oral microbiome influenced by race and ethnicity. Description: Wang, Qingguo, et al. Diversity and characteristics of the oral microbiome influenced by race and ethnicity. ''bioRxiv''. 2024 Oct 7;
Genome analysis of the esca-associated Basidiomycetes Fomitiporia mediterranea, Fomitiporia polymorpha, Inonotus vitis, and Tropicoporus texanus reveals virulence factor repertoires characteristic of white-rot fungi. Description: Garcia, Jadran F, et al. Genome analysis of the esca-associated Basidiomycetes Fomitiporia mediterranea, Fomitiporia polymorpha, Inonotus vitis, and Tropicoporus texanus reveals virulence factor repertoires characteristic of white-rot fungi. ''G3 (Bethesda)''. 2024 Oct 7; '''14''' (10):
Genomic Characterization and Establishment of a Genetic Manipulation System for Trichoderma sp. (Harzianum Clade) LZ117. Description: Yang, Jie, et al. Genomic Characterization and Establishment of a Genetic Manipulation System for Trichoderma sp. (Harzianum Clade) LZ117. ''J Fungi (Basel)''. 2024 Oct 7; '''10''' (10):
The efficacy of different biomarkers and endpoints to refine referrals for suspected prostate cancer: the TARGET study (Tiered integrAted tests for eaRly diaGnosis of clinically significant ProstatE Tumours). Description: Lophatananon, Artitaya, et al. The efficacy of different biomarkers and endpoints to refine referrals for suspected prostate cancer: the TARGET study (Tiered integrAted tests for eaRly diaGnosis of clinically significant ProstatE Tumours). ''BMC Med''. 2024 Oct 8; '''22''' (1):440
Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change. Description: Minot, Samuel S, et al. Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change. ''Sci Rep''. 2024 Oct 9; '''14''' (1):23646
Diversity and transcription of genes involved in respiratory As(V) reduction and As(III) methylation in Japanese paddy soils. Description: Ito, Koji, et al. Diversity and transcription of genes involved in respiratory As(V) reduction and As(III) methylation in Japanese paddy soils. ''BMC Microbiol''. 2024 Oct 9; '''24''' (1):396
First report of carbapenems encoding multidrug-resistant gram-negative bacteria from a pediatric hospital in Gaza Strip, Palestine. Description: El Aila, Nabil Abdullah, et al. First report of carbapenems encoding multidrug-resistant gram-negative bacteria from a pediatric hospital in Gaza Strip, Palestine. ''BMC Microbiol''. 2024 Oct 9; '''24''' (1):393
The conserved genetic program of male germ cells uncovers ancient regulators of human spermatogenesis. Description: Brattig-Correia, Rion, et al. The conserved genetic program of male germ cells uncovers ancient regulators of human spermatogenesis. ''Elife''. 2024 Oct 10; '''13''':
A chromosomal-level genome assembly of Corcyra cephalonica Stainton (Lepidoptera: Pyralidae). Description: Ding, Yinhuan, et al. A chromosomal-level genome assembly of Corcyra cephalonica Stainton (Lepidoptera: Pyralidae). ''Sci Data''. 2024 Oct 11; '''11''' (1):1118
Higher Frequency of SARS-CoV-2 RNA Shedding by Cats than Dogs in Households with Owners Recently Diagnosed with COVID-19. Description: Lunardi, Michele, et al. Higher Frequency of SARS-CoV-2 RNA Shedding by Cats than Dogs in Households with Owners Recently Diagnosed with COVID-19. ''Viruses''. 2024 Oct 11; '''16''' (10):
Untangling lineage introductions, persistence and transmission drivers of HP-PRRSV sublineage 8.7. Description: Sun, Yankuo, et al. Untangling lineage introductions, persistence and transmission drivers of HP-PRRSV sublineage 8.7. ''Nat Commun''. 2024 Oct 13; '''15''' (1):8842
A near-complete assembly of the Houttuynia cordata genome provides insights into the regulatory mechanism of flavonoid biosynthesis in Yuxingcao. Description: Yang, Zhengting, et al. A near-complete assembly of the Houttuynia cordata genome provides insights into the regulatory mechanism of flavonoid biosynthesis in Yuxingcao. ''Plant Commun''. 2024 Oct 14; '''5''' (10):101075
Unveiling Temperature-Induced Structural Phase Transformations and CO(2) Binding Sites in CALF-20. Description: Drweska, Joanna, et al. Unveiling Temperature-Induced Structural Phase Transformations and CO(2) Binding Sites in CALF-20. ''Inorg Chem''. 2024 Oct 14; '''63''' (41):19277-19286
Activated sympathetic nerve post stroke downregulates Toll-like receptor 5 and disrupts the gut mucosal barrier. Description: Wang, Huidi, et al. Activated sympathetic nerve post stroke downregulates Toll-like receptor 5 and disrupts the gut mucosal barrier. ''Cell Rep Med''. 2024 Oct 15; '''5''' (10):101754
Characterization of microbiome, resistome, mobilome, and virulome in anoxic and oxic wastewater treatment processes in Slovakia and Taiwan. Description: Chen, Wei-Yu, et al. Characterization of microbiome, resistome, mobilome, and virulome in anoxic and oxic wastewater treatment processes in Slovakia and Taiwan. ''Heliyon''. 2024 Oct 15; '''10''' (19):e38723
Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments. Description: Wegner, Helen, et al. Identification of Shemin pathway genes for tetrapyrrole biosynthesis in bacteriophage sequences from aquatic environments. ''Nat Commun''. 2024 Oct 15; '''15''' (1):8783
Multi-omics framework to reveal the molecular determinants of fermentation performance in wine yeast populations. Description: de Celis, Miguel, et al. Multi-omics framework to reveal the molecular determinants of fermentation performance in wine yeast populations. ''Microbiome''. 2024 Oct 15; '''12''' (1):203
Unveiling lignocellulolytic potential: a genomic exploration of bacterial lineages within the termite gut. Description: Salgado, Joao Felipe M, et al. Unveiling lignocellulolytic potential: a genomic exploration of bacterial lineages within the termite gut. ''Microbiome''. 2024 Oct 15; '''12''' (1):201
A near chromosome-level genome assembly of a ghost moth (Lepidoptera, Hepialidae). Description: Weng, Yi-Ming, et al. A near chromosome-level genome assembly of a ghost moth (Lepidoptera, Hepialidae). ''Sci Data''. 2024 Oct 16; '''11''' (1):1139
A systematic regulatory network related to bulbil formation in Lilium lancifolium based on metabolome and transcriptome analyses. Description: Ma, Ruiyi, et al. A systematic regulatory network related to bulbil formation in Lilium lancifolium based on metabolome and transcriptome analyses. ''BMC Plant Biol''. 2024 Oct 16; '''24''' (1):969
Cold-water coral mortality under ocean warming is associated with pathogenic bacteria. Description: Chemel, Mathilde, et al. Cold-water coral mortality under ocean warming is associated with pathogenic bacteria. ''Environ Microbiome''. 2024 Oct 16; '''19''' (1):76
Metagenomic discovery of microbial eukaryotes in stool microbiomes. Description: Crouch, Audra L, et al. Metagenomic discovery of microbial eukaryotes in stool microbiomes. ''mBio''. 2024 Oct 16; '''15''' (10):e0206324
Revealing the progression and pathologic features of intraperitoneal infection of Trichomonas vaginalis in mice via parasite alpha-actinin-based immunological detection. Description: Xie, Yiting, et al. Revealing the progression and pathologic features of intraperitoneal infection of Trichomonas vaginalis in mice via parasite alpha-actinin-based immunological detection. ''BMC Infect Dis''. 2024 Oct 17; '''24''' (1):1173
The phageome of patients with ulcerative colitis treated with donor fecal microbiota reveals markers associated with disease remission. Description: Majzoub, Marwan E, et al. The phageome of patients with ulcerative colitis treated with donor fecal microbiota reveals markers associated with disease remission. ''Nat Commun''. 2024 Oct 17; '''15''' (1):8979
Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions. Description: Chen, Cheng-Zhuang, et al. Seasonal variations of microbial communities and viral diversity in fishery-enhanced marine ranching sediments: insights into metabolic potentials and ecological interactions. ''Microbiome''. 2024 Oct 21; '''12''' (1):209
Gut microbiome and serum metabolome alterations associated with lactose intolerance (LI): a case‒control study and paired-sample study based on the American Gut Project (AGP). Description: Xue, Hong, et al. Gut microbiome and serum metabolome alterations associated with lactose intolerance (LI): a case‒control study and paired-sample study based on the American Gut Project (AGP). ''mSystems''. 2024 Oct 22; '''9''' (10):e0083924
The North Pacific Eukaryotic Gene Catalog of metatranscriptome assemblies and annotations. Description: Groussman, R D, et al. The North Pacific Eukaryotic Gene Catalog of metatranscriptome assemblies and annotations. ''Sci Data''. 2024 Oct 22; '''11''' (1):1161
The predicted secreted proteome of activated sludge microorganisms indicates distinct nutrient niches. Description: Wasmund, Kenneth, et al. The predicted secreted proteome of activated sludge microorganisms indicates distinct nutrient niches. ''mSystems''. 2024 Oct 22; '''9''' (10):e0030124
Chromosome-level genome assembly and functional annotation of Citrullus colocynthis: unlocking genetic resources for drought-resilient crop development. Description: Gkanogiannis, Anestis, et al. Chromosome-level genome assembly and functional annotation of Citrullus colocynthis: unlocking genetic resources for drought-resilient crop development. ''Planta''. 2024 Oct 23; '''260''' (6):124
Seasonal stability of the rumen microbiome contributes to the adaptation patterns to extreme environmental conditions in grazing yak and cattle. Description: Guo, Wei, et al. Seasonal stability of the rumen microbiome contributes to the adaptation patterns to extreme environmental conditions in grazing yak and cattle. ''BMC Biol''. 2024 Oct 23; '''22''' (1):240
Taxonomic variation, plastic degradation, and antibiotic resistance traits of plastisphere communities in the maturation pond of a wastewater treatment plant. Description: Maday, Stefan D M, et al. Taxonomic variation, plastic degradation, and antibiotic resistance traits of plastisphere communities in the maturation pond of a wastewater treatment plant. ''Appl Environ Microbiol''. 2024 Oct 23; '''90''' (10):e0071524
Transcriptomic Remodeling Occurs During Cambium Activation and Xylem Cell Development in Taxodium ascendens. Description: Du, Kebing, et al. Transcriptomic Remodeling Occurs During Cambium Activation and Xylem Cell Development in Taxodium ascendens. ''Curr Issues Mol Biol''. 2024 Oct 23; '''46''' (11):11927-11941
Harnessing Daily Routines for Early Detection of Cool Executive Delays: Validating the EFORTS Questionnaire. Description: Frisch, Carmit, et al. Harnessing Daily Routines for Early Detection of Cool Executive Delays: Validating the EFORTS Questionnaire. ''Children (Basel)''. 2024 Oct 24; '''11''' (11):
First Description of Loreto Virus in Three Culicidae Species from the Atlantic Forest, Bahia, Brazil. Description: da Paz, Thito Y Bezerra, et al. First Description of Loreto Virus in Three Culicidae Species from the Atlantic Forest, Bahia, Brazil. ''Viruses''. 2024 Oct 25; '''16''' (11):
Pseudogymnoascus destructans invasion stage impacts the skin microbial functions of highly vulnerable Myotis lucifugus. Description: Lemieux-Labonte, Virginie, et al. Pseudogymnoascus destructans invasion stage impacts the skin microbial functions of highly vulnerable Myotis lucifugus. ''FEMS Microbiol Ecol''. 2024 Oct 25; '''100''' (11):
DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon. Description: Gardiner, Laura-Jayne, et al. DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon. ''NPJ Biofilms Microbiomes''. 2024 Oct 26; '''10''' (1):113
Molecular insights into Solanum sisymbriifolium's resistance against Globodera pallida via RNA-seq. Description: Varandas, Raquel, et al. Molecular insights into Solanum sisymbriifolium's resistance against Globodera pallida via RNA-seq. ''BMC Plant Biol''. 2024 Oct 26; '''24''' (1):1005
Segatella clades adopt distinct roles within a single individual's gut. Description: Xiao, Xieyue, et al. Segatella clades adopt distinct roles within a single individual's gut. ''NPJ Biofilms Microbiomes''. 2024 Oct 27; '''10''' (1):114
Carbon-Substituted Amines of the Cobalt Bis(dicarbollide) Ion: Stereochemistry and Acid-Base Properties. Description: Tuzun, Ece Zeynep, et al. Carbon-Substituted Amines of the Cobalt Bis(dicarbollide) Ion: Stereochemistry and Acid-Base Properties. ''Inorg Chem''. 2024 Oct 28; '''63''' (43):20600-20616
Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication. Description: Guo, Mingxin, et al. Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication. ''Nat Commun''. 2024 Oct 29; '''15''' (1):9320
Chromosome-level genome assembly of Megachile lagopoda (Linnaeus, 1761) (Hymenoptera: Megachilidae). Description: Zhang, Dan, et al. Chromosome-level genome assembly of Megachile lagopoda (Linnaeus, 1761) (Hymenoptera: Megachilidae). ''Sci Data''. 2024 Oct 29; '''11''' (1):1171
Comparative Genomics Reveals Species-Specific Genes and Symbiotic Adaptations in Tricholoma matsutake. Description: Kim, Jea Hyeoung, et al. Comparative Genomics Reveals Species-Specific Genes and Symbiotic Adaptations in Tricholoma matsutake. ''J Fungi (Basel)''. 2024 Oct 29; '''10''' (11):
Increased antibiotic resistance in preterm neonates under early antibiotic use. Description: Ojeda, Amanda, et al. Increased antibiotic resistance in preterm neonates under early antibiotic use. ''mSphere''. 2024 Oct 29; '''9''' (10):e0028624
Insights into prokaryotic communities and their potential functions in biogeochemical cycles in cold seep. Description: Quan, Qiumei, et al. Insights into prokaryotic communities and their potential functions in biogeochemical cycles in cold seep. ''mSphere''. 2024 Oct 29; '''9''' (10):e0054924
Integrated multi-omics analysis of the microbial profile characteristics associated with pulmonary arterial hypertension in congenital heart disease. Description: Xie, Jiahui, et al. Integrated multi-omics analysis of the microbial profile characteristics associated with pulmonary arterial hypertension in congenital heart disease. ''Microbiol Spectr''. 2024 Oct 29; '''12''' (12):e0180824
Large-scale genomic analysis of Elizabethkingia anophelis. Description: Andriyanov, Pavel, et al. Large-scale genomic analysis of Elizabethkingia anophelis. ''BMC Genomics''. 2024 Oct 29; '''25''' (1):1015
Biosynthetic enzyme analysis identifies a protective role for TLR4-acting gut microbial sulfonolipids in inflammatory bowel disease. Description: Older, Ethan A, et al. Biosynthetic enzyme analysis identifies a protective role for TLR4-acting gut microbial sulfonolipids in inflammatory bowel disease. ''Nat Commun''. 2024 Oct 30; '''15''' (1):9371
Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis. Description: Shi, Miaomiao, et al. Chromosome-scale genome assembly of the mangrove climber species Dalbergia candenatensis. ''Sci Data''. 2024 Oct 31; '''11''' (1):1187
Alterations of Gut Microbiome in Patients with Colorectal Advanced Adenoma by Metagenomic Analyses. Description: Xiang, Jingyuan, et al. Alterations of Gut Microbiome in Patients with Colorectal Advanced Adenoma by Metagenomic Analyses. ''Turk J Gastroenterol''. 2024 Nov 1; '''35''' (11):859-868
Ancestral TALE homeobox protein transcription factor regulates actin dynamics and cellular activities of protozoan parasite Entamoeba invadens. Description: Pandey, Meenakshi, et al. Ancestral TALE homeobox protein transcription factor regulates actin dynamics and cellular activities of protozoan parasite Entamoeba invadens. ''Mol Microbiol''. 2024 Nov; '''122''' (5):660-682
A transcriptomic hourglass in brown algae. Description: Lotharukpong, Jaruwatana Sodai, et al. A transcriptomic hourglass in brown algae. ''Nature''. 2024 Nov; '''635''' (8037):129-135
Bifidobacterium pseudolongum-Derived Bile Acid from Dietary Carvacrol and Thymol Supplementation Attenuates Colitis via cGMP-PKG-mTORC1 Pathway. Description: Zhang, Ke, et al. Bifidobacterium pseudolongum-Derived Bile Acid from Dietary Carvacrol and Thymol Supplementation Attenuates Colitis via cGMP-PKG-mTORC1 Pathway. ''Adv Sci (Weinh)''. 2024 Nov; '''11''' (43):e2406917
Comparative Genomics of the World's Smallest Mammals Reveals Links to Echolocation, Metabolism, and Body Size Plasticity. Description: Cossette, Marie-Laurence, et al. Comparative Genomics of the World's Smallest Mammals Reveals Links to Echolocation, Metabolism, and Body Size Plasticity. ''Genome Biol Evol''. 2024 Nov 1; '''16''' (11):
Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes. Description: Nino Barreat, Jose Gabriel, et al. Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes. ''Nat Microbiol''. 2024 Nov; '''9''' (11):3013-3024
Divergent Population Trends of Two Sympatric Auk Species in the Rapidly Warming Gulf of Maine. Description: Durham, Sarah E, et al. Divergent Population Trends of Two Sympatric Auk Species in the Rapidly Warming Gulf of Maine. ''Ecol Evol''. 2024 Nov; '''14''' (11):e70495
EhRacM differentially regulates macropinocytosis and motility in the enteric protozoan parasite Entamoeba histolytica. Description: Shimoyama, Misato, et al. EhRacM differentially regulates macropinocytosis and motility in the enteric protozoan parasite Entamoeba histolytica. ''PLoS Pathog''. 2024 Nov; '''20''' (11):e1012364
Genome Assembly of the Nematode Rhabditoides Inermis From a Complex Microbial Community. Description: Rodelsperger, Christian, et al. Genome Assembly of the Nematode Rhabditoides Inermis From a Complex Microbial Community. ''Genome Biol Evol''. 2024 Nov 1; '''16''' (11):
Genomic analysis reveals hidden species diversity in Emesis Fabricius (Lepidoptera: Riodinidae). Description: Zhang, Jing, et al. Genomic analysis reveals hidden species diversity in Emesis Fabricius (Lepidoptera: Riodinidae). ''Insecta mundi''. 2024 Nov; '''1082''':
Insights into chemoautotrophic traits of a prevalent bacterial phylum CSP1-3, herein Sysuimicrobiota. Description: Liu, Lan, et al. Insights into chemoautotrophic traits of a prevalent bacterial phylum CSP1-3, herein Sysuimicrobiota. ''Natl Sci Rev''. 2024 Nov; '''11''' (11):nwae378
InterLabelGO+: unraveling label correlations in protein function prediction. Description: Liu, Quancheng, et al. InterLabelGO+: unraveling label correlations in protein function prediction. ''Bioinformatics''. 2024 Nov 1; '''40''' (11):
Nature-based bioreactors: Tackling antibiotic resistance in urban wastewater treatment. Description: Bertrans-Tubau, Lluis, et al. Nature-based bioreactors: Tackling antibiotic resistance in urban wastewater treatment. ''Environ Sci Ecotechnol''. 2024 Nov; '''22''': 100445
Repeated Shifts in Sociality Are Associated With Fine-tuning of Highly Conserved and Lineage-Specific Enhancers in a Socially Flexible Bee. Description: Jones, Beryl M, et al. Repeated Shifts in Sociality Are Associated With Fine-tuning of Highly Conserved and Lineage-Specific Enhancers in a Socially Flexible Bee. ''Mol Biol Evol''. 2024 Nov 1; '''41''' (11):
SALINITY-Induced Changes in Diversity, Stability, and Functional Profiles of Microbial Communities in Different Saline Lakes in Arid Areas. Description: Gao, Lei, et al. SALINITY-Induced Changes in Diversity, Stability, and Functional Profiles of Microbial Communities in Different Saline Lakes in Arid Areas. ''Microb Ecol''. 2024 Nov 1; '''87''' (1):135
Systematic characterization of plant-associated bacteria that can degrade indole-3-acetic acid. Description: Wang, Lanxiang, et al. Systematic characterization of plant-associated bacteria that can degrade indole-3-acetic acid. ''PLoS Biol''. 2024 Nov; '''22''' (11):e3002921
Transcriptomics of Diphyllatea (CRuMs) from South Pacific crater lakes confirm new cryptic clades. Description: Galindo, Luis Javier, et al. Transcriptomics of Diphyllatea (CRuMs) from South Pacific crater lakes confirm new cryptic clades. ''J Eukaryot Microbiol''. 2024 Nov-Dec; '''71''' (6):e13060
Genomic diversity of phages infecting the globally widespread genus Sulfurimonas. Description: Li, Xiaofeng, et al. Genomic diversity of phages infecting the globally widespread genus Sulfurimonas. ''Commun Biol''. 2024 Nov 2; '''7''' (1):1428
Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota. Description: Nou, Nancy O, et al. Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota. ''Nat Commun''. 2024 Nov 4; '''15''' (1):9534
A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don. Description: Fujino, Takeshi, et al. A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don. ''BMC Genomics''. 2024 Nov 5; '''25''' (1):1039
Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance. Description: Wu, Jian, et al. Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance. ''BMC Genomics''. 2024 Nov 5; '''25''' (1):1035
In silico discovery of druggable targets in Citrobacter koseri using echinoderm metabolites and molecular dynamics simulation. Description: Alhaidhal, Bayan A, et al. In silico discovery of druggable targets in Citrobacter koseri using echinoderm metabolites and molecular dynamics simulation. ''Sci Rep''. 2024 Nov 5; '''14''' (1):26776
Investigation of Citrobacter freundii clinical isolates in a Chinese hospital during 2020-2022 revealed genomic characterization of an extremely drug-resistant C. freundii ST257 clinical strain GMU8049 co-carrying bla(NDM-1) and a novel bla(CMY) va... Description: Zhang, Mujie, et al. Investigation of Citrobacter freundii clinical isolates in a Chinese hospital during 2020-2022 revealed genomic characterization of an extremely drug-resistant C. freundii ST257 clinical strain GMU8049 co-carrying bla(NDM-1) and a novel bla(CMY) variant. ''Microbiol Spectr''. 2024 Nov 5; '''12''' (11):e0425423
Regulatory Effect of Fucoidan Hydrolysates on Lipopolysaccharide-Induced Inflammation and Intestinal Barrier Dysfunction in Caco-2 and RAW264.7 Cells Co-Cultures. Description: Fu, Xiaodan, et al. Regulatory Effect of Fucoidan Hydrolysates on Lipopolysaccharide-Induced Inflammation and Intestinal Barrier Dysfunction in Caco-2 and RAW264.7 Cells Co-Cultures. ''Foods''. 2024 Nov 5; '''13''' (22):
Soil viral-host interactions regulate microplastic-dependent carbon storage. Description: Wang, Lu, et al. Soil viral-host interactions regulate microplastic-dependent carbon storage. ''Proc Natl Acad Sci U S A''. 2024 Nov 5; '''121''' (45):e2413245121
Transcriptome analysis of mammary epithelial cell between Sewa sheep and East FriEsian sheep from different localities. Description: Li, Rui, et al. Transcriptome analysis of mammary epithelial cell between Sewa sheep and East FriEsian sheep from different localities. ''BMC Genomics''. 2024 Nov 5; '''25''' (1):1038
Comparative genomics of the highly halophilic Haloferacaceae. Description: Griffiths, Dana B, et al. Comparative genomics of the highly halophilic Haloferacaceae. ''Sci Rep''. 2024 Nov 6; '''14''' (1):27025
Effect of Structure on Osteogenesis of Bone Scaffold: Simulation Analysis Based on Mechanobiology and Animal Experiment Verification. Description: Li, Jialiang, et al. Effect of Structure on Osteogenesis of Bone Scaffold: Simulation Analysis Based on Mechanobiology and Animal Experiment Verification. ''Bioengineering (Basel)''. 2024 Nov 6; '''11''' (11):
Tracing the evolutionary and genetic footprints of atmospheric tillandsioids transition from land to air. Description: Lyu, Xiaolong, et al. Tracing the evolutionary and genetic footprints of atmospheric tillandsioids transition from land to air. ''Nat Commun''. 2024 Nov 6; '''15''' (1):9599
A metagenomic catalogue of the ruminant gut archaeome. Description: Mi, Jiandui, et al. A metagenomic catalogue of the ruminant gut archaeome. ''Nat Commun''. 2024 Nov 7; '''15''' (1):9609
Mitomycin C eliminates cyanobacterial transcription without detectable lysogen induction in a Microcystis-dominated bloom in Lake Erie. Description: Martin, Robbie M, et al. Mitomycin C eliminates cyanobacterial transcription without detectable lysogen induction in a Microcystis-dominated bloom in Lake Erie. ''bioRxiv''. 2024 Nov 7;
Laboratory validation of a clinical metagenomic next-generation sequencing assay for respiratory virus detection and discovery. Description: Tan, Jessica Karielle, et al. Laboratory validation of a clinical metagenomic next-generation sequencing assay for respiratory virus detection and discovery. ''Nat Commun''. 2024 Nov 12; '''15''' (1):9016
Microplastic diversity increases the abundance of antibiotic resistance genes in soil. Description: Wang, Yi-Fei, et al. Microplastic diversity increases the abundance of antibiotic resistance genes in soil. ''Nat Commun''. 2024 Nov 12; '''15''' (1):9788
Dietary pattern and the corresponding gut microbiome in response to immunotherapy in Thai patients with advanced non-small cell lung cancer (NSCLC). Description: Sitthideatphaiboon, Piyada, et al. Dietary pattern and the corresponding gut microbiome in response to immunotherapy in Thai patients with advanced non-small cell lung cancer (NSCLC). ''Sci Rep''. 2024 Nov 13; '''14''' (1):27791
Fpa (YlaN) is an iron(II) binding protein that functions to relieve Fur-mediated repression of gene expression in Staphylococcus aureus. Description: Boyd, Jeffrey M, et al. Fpa (YlaN) is an iron(II) binding protein that functions to relieve Fur-mediated repression of gene expression in Staphylococcus aureus. ''mBio''. 2024 Nov 13; '''15''' (11):e0231024
Immuno-physiological role of exogenous enzymes supplementation in heat stressed growing calves. Description: Eid, Sherif Yousif, et al. Immuno-physiological role of exogenous enzymes supplementation in heat stressed growing calves. ''Sci Rep''. 2024 Nov 13; '''14''' (1):27865
Metatranscriptomics-guided discovery and characterization of a polyphenol-metabolizing gut microbial enzyme. Description: Bae, Minwoo, et al. Metatranscriptomics-guided discovery and characterization of a polyphenol-metabolizing gut microbial enzyme. ''Cell Host Microbe''. 2024 Nov 13; '''32''' (11):1887-1896.e8
Missing microbial eukaryotes and misleading meta-omic conclusions. Description: Krinos, Arianna I, et al. Missing microbial eukaryotes and misleading meta-omic conclusions. ''Nat Commun''. 2024 Nov 14; '''15''' (1):9873
Unveiling bat-borne viruses: a comprehensive classification and analysis of virome evolution. Description: Wang, Yuyang, et al. Unveiling bat-borne viruses: a comprehensive classification and analysis of virome evolution. ''Microbiome''. 2024 Nov 14; '''12''' (1):235
Various microbial taxa couple arsenic transformation to nitrogen and carbon cycling in paddy soils. Description: Zhao, Xin-Di, et al. Various microbial taxa couple arsenic transformation to nitrogen and carbon cycling in paddy soils. ''Microbiome''. 2024 Nov 14; '''12''' (1):238
Emission and Transcriptional Regulation of Aroma Variation in Oncidium Twinkle 'Red Fantasy' Under Diel Rhythm. Description: Chen, Yan, et al. Emission and Transcriptional Regulation of Aroma Variation in Oncidium Twinkle 'Red Fantasy' Under Diel Rhythm. ''Plants (Basel)''. 2024 Nov 17; '''13''' (22):
Exploring protein natural diversity in environmental microbiomes with DeepMetagenome. Description: Li, Xiaofang, et al. Exploring protein natural diversity in environmental microbiomes with DeepMetagenome. ''Cell Rep Methods''. 2024 Nov 18; '''4''' (11):100896
A chromosome-level genome assembly of the heteronomous hyperparasitoid wasp Encarsia sophia. Description: Man, Xiaoming, et al. A chromosome-level genome assembly of the heteronomous hyperparasitoid wasp Encarsia sophia. ''Sci Data''. 2024 Nov 19; '''11''' (1):1250
A first look at the genome structure of hexaploid "Mitcham" peppermint (Mentha x piperita L.). Description: Talbot, Samuel C, et al. A first look at the genome structure of hexaploid "Mitcham" peppermint (Mentha x piperita L.). ''G3 (Bethesda)''. 2024 Nov 19; '''14''' (12):
Ecological interactions between marine RNA viruses and planktonic copepods. Description: Hirai, Junya, et al. Ecological interactions between marine RNA viruses and planktonic copepods. ''Commun Biol''. 2024 Nov 19; '''7''' (1):1507
Microbial transcriptional responses to host diet maintain gut microbiome homeostasis in the American cockroach. Description: DePoy, Amber N, et al. Microbial transcriptional responses to host diet maintain gut microbiome homeostasis in the American cockroach. ''bioRxiv''. 2024 Nov 19;
Multi-omics analysis reveals the core microbiome and biomarker for nutrition degradation in alfalfa silage fermentation. Description: Wang, Yuan, et al. Multi-omics analysis reveals the core microbiome and biomarker for nutrition degradation in alfalfa silage fermentation. ''mSystems''. 2024 Nov 19; '''9''' (11):e0068224
The functions of DNA methyltransferases during the feeding and development of Haemaphysalis longicornis are potentially associated with lysosome pathways. Description: Yu, Zhijun, et al. The functions of DNA methyltransferases during the feeding and development of Haemaphysalis longicornis are potentially associated with lysosome pathways. ''BMC Genomics''. 2024 Nov 19; '''25''' (1):1109
Chromosome-level genome assembly of the butterfly hillstream loach Beaufortia pingi. Description: Shen, Qi, et al. Chromosome-level genome assembly of the butterfly hillstream loach Beaufortia pingi. ''Sci Data''. 2024 Nov 20; '''11''' (1):1260
Integrative analysis of gut microbiome and host transcriptome reveal novel molecular signatures in Hashimoto's thyroiditis. Description: Li, Miao, et al. Integrative analysis of gut microbiome and host transcriptome reveal novel molecular signatures in Hashimoto's thyroiditis. ''J Transl Med''. 2024 Nov 20; '''22''' (1):1045
Root hair developmental regulators orchestrate drought triggered microbiome changes and the interaction with beneficial Rhizobiaceae. Description: Wang, Zhenghong, et al. Root hair developmental regulators orchestrate drought triggered microbiome changes and the interaction with beneficial Rhizobiaceae. ''Nat Commun''. 2024 Nov 20; '''15''' (1):10068
Multiomics of yaks reveals significant contribution of microbiome into host metabolism. Description: Yang, Shuli, et al. Multiomics of yaks reveals significant contribution of microbiome into host metabolism. ''NPJ Biofilms Microbiomes''. 2024 Nov 21; '''10''' (1):133
Soil properties drive nitrous oxide accumulation patterns by shaping denitrifying bacteriomes. Description: Bano, Saira, et al. Soil properties drive nitrous oxide accumulation patterns by shaping denitrifying bacteriomes. ''Environ Microbiome''. 2024 Nov 21; '''19''' (1):94
AutoXAI4Omics: an automated explainable AI tool for omics and tabular data. Description: Strudwick, James, et al. AutoXAI4Omics: an automated explainable AI tool for omics and tabular data. ''Brief Bioinform''. 2024 Nov 22; '''26''' (1):
PHPGAT: predicting phage hosts based on multimodal heterogeneous knowledge graph with graph attention network. Description: Liu, Fu, et al. PHPGAT: predicting phage hosts based on multimodal heterogeneous knowledge graph with graph attention network. ''Brief Bioinform''. 2024 Nov 22; '''26''' (1):
Functional redundancy buffers the effect of poly-extreme environmental conditions on southern African dryland soil microbial communities. Description: Sauma-Sanchez, Tomas, et al. Functional redundancy buffers the effect of poly-extreme environmental conditions on southern African dryland soil microbial communities. ''FEMS Microbiol Ecol''. 2024 Nov 23; '''100''' (12):
Taxonomic and functional partitioning of Chloroflexota populations under ferruginous conditions at and below the sediment-water interface. Description: Vuillemin, Aurele, et al. Taxonomic and functional partitioning of Chloroflexota populations under ferruginous conditions at and below the sediment-water interface. ''FEMS Microbiol Ecol''. 2024 Nov 23; '''100''' (12):
The links between dietary diversity and RNA virus diversity harbored by the great evening bat (Ia io). Description: Huang, Zhenglanyi, et al. The links between dietary diversity and RNA virus diversity harbored by the great evening bat (Ia io). ''Microbiome''. 2024 Nov 23; '''12''' (1):246
A draft genome assembly of the reef-building coral Acropora hemprichii from the central Red Sea. Description: Fiesinger, Anna, et al. A draft genome assembly of the reef-building coral Acropora hemprichii from the central Red Sea. ''Sci Data''. 2024 Nov 26; '''11''' (1):1288
Increased rumen Prevotella enhances BCAA synthesis, leading to synergistically increased skeletal muscle in myostatin-knockout cattle. Description: Hai, Chao, et al. Increased rumen Prevotella enhances BCAA synthesis, leading to synergistically increased skeletal muscle in myostatin-knockout cattle. ''Commun Biol''. 2024 Nov 26; '''7''' (1):1575
Deep learning revealed the distribution and evolution patterns for invertible promoters across bacterial lineages. Description: Wen, Jiejie, et al. Deep learning revealed the distribution and evolution patterns for invertible promoters across bacterial lineages. ''Nucleic Acids Res''. 2024 Nov 27; '''52''' (21):12817-12830
Novel polyomavirus in the endangered garden dormouse Eliomys quercinus. Description: Vasiliunaite, Emilija, et al. Novel polyomavirus in the endangered garden dormouse Eliomys quercinus. ''Virol J''. 2024 Nov 27; '''21''' (1):309
A DNA methylation signature identified in the buccal mucosa reflecting active tuberculosis is changing during tuberculosis treatment. Description: Ohrnberg, Isabelle, et al. A DNA methylation signature identified in the buccal mucosa reflecting active tuberculosis is changing during tuberculosis treatment. ''Sci Rep''. 2024 Nov 28; '''14''' (1):29552
FAPM: functional annotation of proteins using multimodal models beyond structural modeling. Description: Xiang, Wenkai, et al. FAPM: functional annotation of proteins using multimodal models beyond structural modeling. ''Bioinformatics''. 2024 Nov 28; '''40''' (12):
Flavobacterium nakdongensis sp. nov., Isolated from Fresh Water during the Cyanobacterial Bloom Period. Description: Le, Ve Van, et al. Flavobacterium nakdongensis sp. nov., Isolated from Fresh Water during the Cyanobacterial Bloom Period. ''J Microbiol Biotechnol''. 2024 Nov 28; '''34''' (11):2245-2251
Single torradovirus infections explain the mysterious cassava frogskin disease in the Americas. Description: Jimenez, Jenyfer, et al. Single torradovirus infections explain the mysterious cassava frogskin disease in the Americas. ''Sci Rep''. 2024 Nov 28; '''14''' (1):29648
Investigation of RNA Viruses in Culicoides Latreille, 1809 (Diptera: Ceratopogonidae) in a Mining Complex in the Southeastern Region of the Brazilian Amazon. Description: Silva, Samia Luzia Sena da, et al. Investigation of RNA Viruses in Culicoides Latreille, 1809 (Diptera: Ceratopogonidae) in a Mining Complex in the Southeastern Region of the Brazilian Amazon. ''Viruses''. 2024 Nov 29; '''16''' (12):
TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation. Description: Pektas, Aysevil, et al. TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation. ''Genes (Basel)''. 2024 Nov 29; '''15''' (12):
Comparative genomics and virulence potential of Campylobacter coli strains isolated from different sources over 25 years in Brazil. Description: Gomes, Carolina Nogueira, et al. Comparative genomics and virulence potential of Campylobacter coli strains isolated from different sources over 25 years in Brazil. ''BMC Microbiol''. 2024 Nov 30; '''24''' (1):512
A novel strain of Leishmania braziliensis harbors not a toti- but a bunyavirus. Description: Kostygov, Alexei Yu, et al. A novel strain of Leishmania braziliensis harbors not a toti- but a bunyavirus. ''PLoS Negl Trop Dis''. 2024 Dec; '''18''' (12):e0012767
A replicated, whole-insect transcriptomic dataset for Nezara viridula (southern green stink bug) spanning developmental stadia and sexes. Description: Sparks, Michael E, et al. A replicated, whole-insect transcriptomic dataset for Nezara viridula (southern green stink bug) spanning developmental stadia and sexes. ''Data Brief''. 2024 Dec; '''57''': 111106
CerM and Its Antagonist CerN Are New Components of the Quorum Sensing System in Cereibacter sphaeroides, Signaling to the CckA/ChpT/CtrA System. Description: Hernandez-Valle, Jose, et al. CerM and Its Antagonist CerN Are New Components of the Quorum Sensing System in Cereibacter sphaeroides, Signaling to the CckA/ChpT/CtrA System. ''Microbiologyopen''. 2024 Dec; '''13''' (6):e012
Characteristics and function of the gut microbiota in patients with IgA nephropathy via metagenomic sequencing technology. Description: Deng, Yang, et al. Characteristics and function of the gut microbiota in patients with IgA nephropathy via metagenomic sequencing technology. ''Ren Fail''. 2024 Dec; '''46''' (2):2393754
Chromosome-scale genome assembly of acerola (Malpighia emarginata DC.). Description: Shirasawa, Kenta, et al. Chromosome-scale genome assembly of acerola (Malpighia emarginata DC.). ''DNA Res''. 2024 Dec 1; '''31''' (6):
Cohabiting with ulcerative colitis patients decreases differences of gut microbiome between healthy individuals and the patients. Description: Li, Chen, et al. Cohabiting with ulcerative colitis patients decreases differences of gut microbiome between healthy individuals and the patients. ''Ann Med''. 2024 Dec; '''56''' (1):2337712
Comparative Genomic Analysis of an Apiotrichum cacaoliposimilis Strain Isolated from a Patient with Urinary Tract Infection. Description: Wang, Wei, et al. Comparative Genomic Analysis of an Apiotrichum cacaoliposimilis Strain Isolated from a Patient with Urinary Tract Infection. ''Pol J Microbiol''. 2024 Dec 1; '''73''' (4):475-489
Comprehensive insight into the alterations in the gut microbiome and the intestinal barrier as a consequence of iron deficiency anaemia. Description: Soriano-Lerma, Ana, et al. Comprehensive insight into the alterations in the gut microbiome and the intestinal barrier as a consequence of iron deficiency anaemia. ''Biomed J''. 2024 Dec; '''47''' (6):100701
Differential prevalence and risk factors for infection with coronaviruses in bats collected from Yunnan Province, China. Description: Li, Ruiya, et al. Differential prevalence and risk factors for infection with coronaviruses in bats collected from Yunnan Province, China. ''One Health''. 2024 Dec; '''19''': 100923
Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases. Description: Rempfer, Christine, et al. Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases. ''Comput Struct Biotechnol J''. 2024 Dec; '''23''': 2580-2594
Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes. Description: Chen, Beihan, et al. Discovery of a novel marine Bacteroidetes with a rich repertoire of carbohydrate-active enzymes. ''Comput Struct Biotechnol J''. 2024 Dec; '''23''': 406-416
Dothistroma septosporum and Dothistroma pini, the causal agents of Dothistroma needle blight, are infected by multiple viruses. Description: Trifkovic, Milos, et al. Dothistroma septosporum and Dothistroma pini, the causal agents of Dothistroma needle blight, are infected by multiple viruses. ''Virus Res''. 2024 Dec; '''350''': 199476
EEfinder, a general purpose tool for identification of bacterial and viral endogenized elements in eukaryotic genomes. Description: Dias, Yago Jose Mariz, et al. EEfinder, a general purpose tool for identification of bacterial and viral endogenized elements in eukaryotic genomes. ''Comput Struct Biotechnol J''. 2024 Dec; '''23''': 3662-3668
Effects of including different levels of equal mix of soybean and flaxseed oils in Japanese quail diets on the growth, carcass quality, and blood biomarkers. Description: Abd El-Hack, Mohamed E, et al. Effects of including different levels of equal mix of soybean and flaxseed oils in Japanese quail diets on the growth, carcass quality, and blood biomarkers. ''Poult Sci''. 2024 Dec; '''103''' (12):104446
Exploring the dynamics of gut microbiota, antibiotic resistance, and chemotherapy impact in acute leukemia patients: A comprehensive metagenomic analysis. Description: Luo, Ying, et al. Exploring the dynamics of gut microbiota, antibiotic resistance, and chemotherapy impact in acute leukemia patients: A comprehensive metagenomic analysis. ''Virulence''. 2024 Dec; '''15''' (1):2428843
First description of a mobatvirus (Hantaviridae) in the Amazon region. Description: Hernandez, Leonardo Henrique Almeida, et al. First description of a mobatvirus (Hantaviridae) in the Amazon region. ''Virus Res''. 2024 Dec; '''350''': 199494
Increased antibiotic resistance gene abundance linked to intensive bacterial competition in the phyllosphere across an elevational gradient. Description: Ding, Yihui, et al. Increased antibiotic resistance gene abundance linked to intensive bacterial competition in the phyllosphere across an elevational gradient. ''Environ Microbiol Rep''. 2024 Dec; '''16''' (6):e70042
Integrated omics analysis reveals the alteration of gut microbiota and fecal metabolites in Cervus elaphus kansuensis. Description: Zhang, Zhenxiang, et al. Integrated omics analysis reveals the alteration of gut microbiota and fecal metabolites in Cervus elaphus kansuensis. ''Appl Microbiol Biotechnol''. 2024 Dec; '''108''' (1):125
Marine Pediococcus pentosaceus E3 Probiotic Properties, Whole-Genome Sequence Analysis, and Safety Assessment. Description: Zaghloul, Eman H, et al. Marine Pediococcus pentosaceus E3 Probiotic Properties, Whole-Genome Sequence Analysis, and Safety Assessment. ''Probiotics Antimicrob Proteins''. 2024 Dec; '''16''' (6):1925-1936
Mycological and Genomic Characterization of Fusarium vorosii, a Potentially Pathogenic Fungus, Isolated from Field Crops and Weeds in Korea. Description: Jeong, Eunji, et al. Mycological and Genomic Characterization of Fusarium vorosii, a Potentially Pathogenic Fungus, Isolated from Field Crops and Weeds in Korea. ''Plant Pathol J''. 2024 Dec; '''40''' (6):656-670
Optimal Representative Strain selector-a comprehensive pipeline for selecting next-generation reference strains of bacterial species. Description: Tarracchini, Chiara, et al. Optimal Representative Strain selector-a comprehensive pipeline for selecting next-generation reference strains of bacterial species. ''NAR Genom Bioinform''. 2024 Dec; '''6''' (4):lqae173
Soil microbiomes show consistent and predictable responses to extreme events. Description: Knight, Christopher G, et al. Soil microbiomes show consistent and predictable responses to extreme events. ''Nature''. 2024 Dec; '''636''' (8043):690-696
The gut microbiota-derived metabolite indole-3-propionic acid enhances leptin sensitivity by targeting STAT3 against diet-induced obesity. Description: Wang, Zhiwei, et al. The gut microbiota-derived metabolite indole-3-propionic acid enhances leptin sensitivity by targeting STAT3 against diet-induced obesity. ''Clin Transl Med''. 2024 Dec; '''14''' (12):e70053
Viral diversity in wild and urban rodents of Yunnan Province, China. Description: Kane, Yakhouba, et al. Viral diversity in wild and urban rodents of Yunnan Province, China. ''Emerg Microbes Infect''. 2024 Dec; '''13''' (1):2290842
Whole genome sequence data of ZEN-degrading strain Levilactobacillus brevis PYN10_6_2 isolated from Tenebrio molitor larval feces. Description: Zhao, Mengru, et al. Whole genome sequence data of ZEN-degrading strain Levilactobacillus brevis PYN10_6_2 isolated from Tenebrio molitor larval feces. ''Data Brief''. 2024 Dec; '''57''': 110911
Genomic Characterization of Bacillus sp. THPS1: A Hot Spring-Derived Species with Functional Features and Biotechnological Potential. Description: Mwamburi, Samuel Mwakisha, et al. Genomic Characterization of Bacillus sp. THPS1: A Hot Spring-Derived Species with Functional Features and Biotechnological Potential. ''Microorganisms''. 2024 Dec 2; '''12''' (12):
La-Ni-Si: A Gold Mine with a Diamond. Description: Smetana, Volodymyr, et al. La-Ni-Si: A Gold Mine with a Diamond. ''Inorg Chem''. 2024 Dec 2; '''63''' (48):22761-22770
Identification of specific microbiota members that induce beige fat biogenesis in response to dietary cues. Description: Honda, Kenya, et al. Identification of specific microbiota members that induce beige fat biogenesis in response to dietary cues. ''Res Sq''. 2024 Dec 3;
Long-read sequencing sheds light on key bacteria contributing to deadwood decomposition processes. Description: Richy, Etienne, et al. Long-read sequencing sheds light on key bacteria contributing to deadwood decomposition processes. ''Environ Microbiome''. 2024 Dec 3; '''19''' (1):99
Multiple Displacement Amplification Facilitates SMRT Sequencing of Microscopic Animals and the Genome of the Gastrotrich Lepidodermella squamata (Dujardin 1841). Description: Roberts, Nickellaus G, et al. Multiple Displacement Amplification Facilitates SMRT Sequencing of Microscopic Animals and the Genome of the Gastrotrich Lepidodermella squamata (Dujardin 1841). ''Genome Biol Evol''. 2024 Dec 4; '''16''' (12):
Repeat-induced point mutations driving Parastagonospora nodorum genomic diversity are balanced by selection against non-synonymous mutations. Description: Jones, Darcy A B, et al. Repeat-induced point mutations driving Parastagonospora nodorum genomic diversity are balanced by selection against non-synonymous mutations. ''Commun Biol''. 2024 Dec 4; '''7''' (1):1614
TIdeS: A Comprehensive Framework for Accurate Open Reading Frame Identification and Classification in Eukaryotic Transcriptomes. Description: Maurer-Alcala, Xyrus X, et al. TIdeS: A Comprehensive Framework for Accurate Open Reading Frame Identification and Classification in Eukaryotic Transcriptomes. ''Genome Biol Evol''. 2024 Dec 4; '''16''' (12):
Co-evolution and Gene Transfers Drive Speciation Patterns in Host-Associated Bacteria. Description: Stott, Caroline, et al. Co-evolution and Gene Transfers Drive Speciation Patterns in Host-Associated Bacteria. ''Mol Biol Evol''. 2024 Dec 6; '''41''' (12):
Acarbose impairs gut Bacteroides growth by targeting intracellular glucosidases. Description: Brown, Haley A, et al. Acarbose impairs gut Bacteroides growth by targeting intracellular glucosidases. ''mBio''. 2024 Dec 11; '''15''' (12):e0150624
Whole-Genome Sequence Analysis of Flammulina filiformis and Functional Validation of Gad, a Key Gene for gamma-Aminobutyric Acid Synthesis. Description: Li, Wenyun, et al. Whole-Genome Sequence Analysis of Flammulina filiformis and Functional Validation of Gad, a Key Gene for gamma-Aminobutyric Acid Synthesis. ''J Fungi (Basel)''. 2024 Dec 12; '''10''' (12):
Comparative Genomics of Different Lifestyle Fungi in Helotiales (Leotiomycetes) Reveals Temperature and Ecosystem Adaptations. Description: Rissi, Daniel Vasconcelos, et al. Comparative Genomics of Different Lifestyle Fungi in Helotiales (Leotiomycetes) Reveals Temperature and Ecosystem Adaptations. ''J Fungi (Basel)''. 2024 Dec 14; '''10''' (12):
Transcriptome profiling reveals novel insights into the regulation of calcium ion and detoxification genes driving chlorantraniliprole resistance in Spodoptera exigua. Description: Han, Changhee, et al. Transcriptome profiling reveals novel insights into the regulation of calcium ion and detoxification genes driving chlorantraniliprole resistance in Spodoptera exigua. ''Heliyon''. 2024 Dec 15; '''10''' (23):e40556
Structural Basis for Inhibition of the SARS-CoV-2 nsp16 by Substrate-Based Dual Site Inhibitors. Description: Kalnins, Gints, et al. Structural Basis for Inhibition of the SARS-CoV-2 nsp16 by Substrate-Based Dual Site Inhibitors. ''ChemMedChem''. 2024 Dec 16; '''19''' (24):e202400618
Syntheses and Crystal Structures of Alkaline Earth Metal Hydrogen Acetylides AE(C(2)H)(2) with AE = Ca, Sr, Ba. Description: Kortgen, Lisa, et al. Syntheses and Crystal Structures of Alkaline Earth Metal Hydrogen Acetylides AE(C(2)H)(2) with AE = Ca, Sr, Ba. ''Inorg Chem''. 2024 Dec 16; '''63''' (50):23749-23756
Different artificial feeding strategies shape the diverse gut microbial communities and functions with the potential risk of pathogen transmission to captive Asian small-clawed otters (Aonyx cinereus). Description: Gao, Yuanda, et al. Different artificial feeding strategies shape the diverse gut microbial communities and functions with the potential risk of pathogen transmission to captive Asian small-clawed otters (Aonyx cinereus). ''mSystems''. 2024 Dec 17; '''9''' (12):e0095424
A nearly telomere-to-telomere diploid genome assembly of Firmiana kwangsiensis, a threatened species in China. Description: Wang, Boqiang, et al. A nearly telomere-to-telomere diploid genome assembly of Firmiana kwangsiensis, a threatened species in China. ''Sci Data''. 2024 Dec 18; '''11''' (1):1394
A novel virus potentially evolved from the N4-like viruses represents a unique viral family: Poorviridae. Description: Wang, Wei, et al. A novel virus potentially evolved from the N4-like viruses represents a unique viral family: Poorviridae. ''Appl Environ Microbiol''. 2024 Dec 18; '''90''' (12):e0155924
Chromosome-level genome assembly of Phortica okadai, a vector of Thelazia callipaeda. Description: Wang, Lingjun, et al. Chromosome-level genome assembly of Phortica okadai, a vector of Thelazia callipaeda. ''Sci Data''. 2024 Dec 18; '''11''' (1):1370
Contamination Characteristics of Antibiotic Resistance Genes in Multi-Vector Environment in Typical Regional Fattening House. Description: Wang, Kai, et al. Contamination Characteristics of Antibiotic Resistance Genes in Multi-Vector Environment in Typical Regional Fattening House. ''Toxics''. 2024 Dec 18; '''12''' (12):
Whole-Genome Sequencing and Genome Annotation of Pathogenic Elsinoe batatas Causing Stem and Foliage Scab Disease in Sweet Potato. Description: Xu, Yuan, et al. Whole-Genome Sequencing and Genome Annotation of Pathogenic Elsinoe batatas Causing Stem and Foliage Scab Disease in Sweet Potato. ''J Fungi (Basel)''. 2024 Dec 18; '''10''' (12):
Comparative genomics of obligate predatory bacteria belonging to phylum Bdellovibrionota highlights distribution and predicted functions of lineage-specific protein families. Description: Davis, Sidney C, et al. Comparative genomics of obligate predatory bacteria belonging to phylum Bdellovibrionota highlights distribution and predicted functions of lineage-specific protein families. ''mSphere''. 2024 Dec 19; '''9''' (12):e0068024
Genome assembly of a nocturnal butterfly (Macrosoma leucophasiata) reveals convergent adaptation of visual genes. Description: Singh, Rachit Pratap, et al. Genome assembly of a nocturnal butterfly (Macrosoma leucophasiata) reveals convergent adaptation of visual genes. ''Commun Biol''. 2024 Dec 19; '''7''' (1):1664
Metagenomic analysis reveals the community composition of the microbiome in different segments of the digestive tract in donkeys and cows: implications for microbiome research. Description: Su, Lei, et al. Metagenomic analysis reveals the community composition of the microbiome in different segments of the digestive tract in donkeys and cows: implications for microbiome research. ''BMC Microbiol''. 2024 Dec 19; '''24''' (1):530
Metagenomic Analysis Reveals the Effects of Microplastics on Antibiotic Resistance Genes in Sludge Anaerobic Digestion. Description: Li, Zhonghong, et al. Metagenomic Analysis Reveals the Effects of Microplastics on Antibiotic Resistance Genes in Sludge Anaerobic Digestion. ''Toxics''. 2024 Dec 19; '''12''' (12):
Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD(). Description: Li, Cunyuan, et al. Gastrointestinal jumbo phages possess independent synthesis and utilization systems of NAD(). ''Microbiome''. 2024 Dec 20; '''12''' (1):268
Increased methane production associated with community shifts towards Methanocella in paddy soils with the presence of nanoplastics. Description: He, Zhibin, et al. Increased methane production associated with community shifts towards Methanocella in paddy soils with the presence of nanoplastics. ''Microbiome''. 2024 Dec 20; '''12''' (1):259
Shotgun metagenomic sequencing reveals the influence of artisanal dairy environments on the microbiomes, quality, and safety of Idiazabal, a raw ewe milk PDO cheese. Description: Santamarina-Garcia, Gorka, et al. Shotgun metagenomic sequencing reveals the influence of artisanal dairy environments on the microbiomes, quality, and safety of Idiazabal, a raw ewe milk PDO cheese. ''Microbiome''. 2024 Dec 20; '''12''' (1):262
Spatiotemporal differences induced changes in the structure and function of the gut microbiota in an endangered ungulate. Description: Ma, Xiaofan, et al. Spatiotemporal differences induced changes in the structure and function of the gut microbiota in an endangered ungulate. ''Anim Microbiome''. 2024 Dec 20; '''6''' (1):74
A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae). Description: Ye, Maolin, et al. A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae). ''Sci Data''. 2024 Dec 23; '''11''' (1):1421
An efficient multi-gram access in a two-step synthesis to soluble, nine-atomic, silylated silicon clusters. Description: Frankiewicz, Kevin M, et al. An efficient multi-gram access in a two-step synthesis to soluble, nine-atomic, silylated silicon clusters. ''Nat Commun''. 2024 Dec 23; '''15''' (1):10715
Chromosome-level genome assembly of the highly-polymorphic peacock blenny (Salaria pavo). Description: Cardoso, Sara D, et al. Chromosome-level genome assembly of the highly-polymorphic peacock blenny (Salaria pavo). ''Sci Data''. 2024 Dec 23; '''11''' (1):1424
Diet of the blue crab (Callinectes sapidus) during range expansion in Great Bay Estuary, New Hampshire. Description: Meyer-Rust, Kelsey A, et al. Diet of the blue crab (Callinectes sapidus) during range expansion in Great Bay Estuary, New Hampshire. ''BMC Genomics''. 2024 Dec 23; '''25''' (1):1238
Chromosome-level genome assembly of the ratmouth barbel, Ptychidio jordani. Description: Wang, Yuanyuan, et al. Chromosome-level genome assembly of the ratmouth barbel, Ptychidio jordani. ''Sci Data''. 2024 Dec 26; '''11''' (1):1435
Effects of supplementary light treatment on saffron: integrated physiological, metabolomic, and transcriptome analyses. Description: Li, Li, et al. Effects of supplementary light treatment on saffron: integrated physiological, metabolomic, and transcriptome analyses. ''BMC Plant Biol''. 2024 Dec 26; '''24''' (1):1247
Pathogens spread by high-altitude windborne mosquitoes. Description: Bamou, R, et al. Pathogens spread by high-altitude windborne mosquitoes. ''bioRxiv''. 2024 Dec 26;
Spraying methyl jasmonate before harvesting can significantly increase the content of icariin in an important leaf medicinal herb, Epimedium sagittatum, by activating the expression of genes involved in flavonoid synthesis pathways. Description: Yang, Linlin, et al. Spraying methyl jasmonate before harvesting can significantly increase the content of icariin in an important leaf medicinal herb, Epimedium sagittatum, by activating the expression of genes involved in flavonoid synthesis pathways. ''BMC Plant Biol''. 2024 Dec 26; '''24''' (1):1248
A conserved pilin from uncultured gut bacterial clade TANB77 enhances cancer immunotherapy. Description: Kim, Chan Yeong, et al. A conserved pilin from uncultured gut bacterial clade TANB77 enhances cancer immunotherapy. ''Nat Commun''. 2024 Dec 27; '''15''' (1):10726
Epigenomic and 3D genomic mapping reveals developmental dynamics and subgenomic asymmetry of transcriptional regulatory architecture in allotetraploid cotton. Description: Huang, Xianhui, et al. Epigenomic and 3D genomic mapping reveals developmental dynamics and subgenomic asymmetry of transcriptional regulatory architecture in allotetraploid cotton. ''Nat Commun''. 2024 Dec 27; '''15''' (1):10721
Chromosome-level Haploid Assembly of Cannabis sativa L. cv. Pink Pepper. Description: Ryu, Byeong-Ryeol, et al. Chromosome-level Haploid Assembly of Cannabis sativa L. cv. Pink Pepper. ''Sci Data''. 2024 Dec 28; '''11''' (1):1442
Short-chain fatty acids play a key role in antibody response to SARS-CoV-2 infection in people living with HIV. Description: Pan, Jingying, et al. Short-chain fatty acids play a key role in antibody response to SARS-CoV-2 infection in people living with HIV. ''Sci Rep''. 2024 Dec 28; '''14''' (1):31211
Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont. Description: Zhang, Shan, et al. Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont. ''Nat Commun''. 2024 Dec 30; '''15''' (1):10858
Development of a microbiome for phenolic metabolism based on a domestication approach from lab to industrial application. Description: Zhao, Wei, et al. Development of a microbiome for phenolic metabolism based on a domestication approach from lab to industrial application. ''Commun Biol''. 2024 Dec 31; '''7''' (1):1716
Unraveling the role of gut microbiome in predicting adverse events in neoadjuvant therapy for rectal cancer. Description: Ma, Jingxin, et al. Unraveling the role of gut microbiome in predicting adverse events in neoadjuvant therapy for rectal cancer. ''Hum Vaccin Immunother''. 2024 Dec 31; '''20''' (1):2430087
Acidity, sugar, and alcohol contents during the fermentation of Osmanthus-flavored sweet rice wine and microbial community dynamics. Description: Tian, Ping, et al. Acidity, sugar, and alcohol contents during the fermentation of Osmanthus-flavored sweet rice wine and microbial community dynamics. ''PeerJ''. 2025; '''13''': e18826
Antarctic Geothermal Soils Exhibit an Absence of Regional Habitat Generalist Microorganisms. Description: Noell, Stephen E, et al. Antarctic Geothermal Soils Exhibit an Absence of Regional Habitat Generalist Microorganisms. ''Environ Microbiol''. 2025 Jan; '''27''' (1):e70032
Antibiotic exposure enriches streptococci carrying resistance genes in periodontitis plaque biofilms. Description: Zhang, Qian, et al. Antibiotic exposure enriches streptococci carrying resistance genes in periodontitis plaque biofilms. ''PeerJ''. 2025; '''13''': e18835
Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers. Description: Brizola Toscan, Rodolfo, et al. Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers. ''Front Genet''. 2025; '''16''': 1460508
Bifidobacterium animalis subsp. lactis TG11 ameliorates loperamide-induced constipation in mice by modulating gut microbiota. Description: Ma, Weiwei, et al. Bifidobacterium animalis subsp. lactis TG11 ameliorates loperamide-induced constipation in mice by modulating gut microbiota. ''Front Microbiol''. 2025; '''16''': 1525887
Chemical pollution drives taxonomic and functional shifts in marine sediment microbiome, influencing benthic metazoans. Description: Xu, Lin-Lin, et al. Chemical pollution drives taxonomic and functional shifts in marine sediment microbiome, influencing benthic metazoans. ''ISME Commun''. 2025 Jan; '''5''' (1):ycae141
Decoding the anomalies: a genome-based analysis of Bacillus cereus group strains closely related to Bacillus anthracis. Description: Magome, Thuto Gomolemo, et al. Decoding the anomalies: a genome-based analysis of Bacillus cereus group strains closely related to Bacillus anthracis. ''Front Microbiol''. 2025; '''16''': 1527049
Dispensable genome and segmental duplications drive the genome plasticity in Fusarium solani. Description: Navasca, Abbeah, et al. Dispensable genome and segmental duplications drive the genome plasticity in Fusarium solani. ''Front Fungal Biol''. 2025; '''6''': 1432339
Efficacy of videoconferencing-delivered cognitive behavioural therapy to reduce anxiety disorder severity in LGBTQ+ people: An exploratory trial protocol. Description: Dunn, Isaac B J M D, et al. Efficacy of videoconferencing-delivered cognitive behavioural therapy to reduce anxiety disorder severity in LGBTQ+ people: An exploratory trial protocol. ''PLoS One''. 2025; '''20''' (1):e0316857
Evaluating the advancements in protein language models for encoding strategies in protein function prediction: a comprehensive review. Description: Chen, Jia-Ying, et al. Evaluating the advancements in protein language models for encoding strategies in protein function prediction: a comprehensive review. ''Front Bioeng Biotechnol''. 2025; '''13''': 1506508
Expanding the genomic diversity of human anelloviruses. Description: Modha, Sejal, et al. Expanding the genomic diversity of human anelloviruses. ''Virus Evol''. 2025; '''11''' (1):veaf002
Exploring the recombinant evolution and hosts of crucivirus based on novel oyster-associated viruses. Description: Zhang, Hong-Sai, et al. Exploring the recombinant evolution and hosts of crucivirus based on novel oyster-associated viruses. ''Front Microbiol''. 2025; '''16''': 1454079
Free-caged rearing modes regulate chicken intestinal metabolism by influencing gut microbial homeostasis. Description: Li, Tao, et al. Free-caged rearing modes regulate chicken intestinal metabolism by influencing gut microbial homeostasis. ''Poult Sci''. 2025 Jan; '''104''' (1):104381
Genomic features of lichen-associated black fungi. Description: Keller, Victoria, et al. Genomic features of lichen-associated black fungi. ''IUBMB Life''. 2025 Jan; '''77''' (1):e2934
Genomic insights and comparative analysis of Colletotrichum species associated with anthracnose fruit rot and crown rot of strawberry in North Carolina. Description: Adhikari, Tika B, et al. Genomic insights and comparative analysis of Colletotrichum species associated with anthracnose fruit rot and crown rot of strawberry in North Carolina. ''Front Microbiol''. 2025; '''16''': 1515894
Gut microbiota and plasma metabolites in pregnant mothers and infant atopic dermatitis: A multi-omics study. Description: Du, Bingqian, et al. Gut microbiota and plasma metabolites in pregnant mothers and infant atopic dermatitis: A multi-omics study. ''World Allergy Organ J''. 2025 Jan; '''18''' (1):101017
Hayai-Annotation: A functional gene prediction tool that integrates orthologs and gene ontology for network analysis in plant species. Description: Ghelfi, Andrea, et al. Hayai-Annotation: A functional gene prediction tool that integrates orthologs and gene ontology for network analysis in plant species. ''Comput Struct Biotechnol J''. 2025; '''27''': 117-126
Hepatincolaceae (Alphaproteobacteria) are Distinct From Holosporales and Independently Evolved to Associate With Ecdysozoa. Description: Castelli, Michele, et al. Hepatincolaceae (Alphaproteobacteria) are Distinct From Holosporales and Independently Evolved to Associate With Ecdysozoa. ''Environ Microbiol''. 2025 Jan; '''27''' (1):e70028
Light-dependent variations in fatty acid profiles and gene expression in Antarctic microalgal cultures. Description: Stuart, Jacqui, et al. Light-dependent variations in fatty acid profiles and gene expression in Antarctic microalgal cultures. ''PLoS One''. 2025; '''20''' (1):e0317044
Metagenomic Insights into Pigeon Gut Microbiota Characteristics and Antibiotic-Resistant Genes. Description: Dai, Wei, et al. Metagenomic Insights into Pigeon Gut Microbiota Characteristics and Antibiotic-Resistant Genes. ''Biology (Basel)''. 2025 Jan 1; '''14''' (1):
Microbiome and metabolomics reveal the effect of gut microbiota on liver regeneration of fatty liver disease. Description: Hu, Yiqing, et al. Microbiome and metabolomics reveal the effect of gut microbiota on liver regeneration of fatty liver disease. ''EBioMedicine''. 2025 Jan; '''111''': 105482
Modulating Gut Microbiota: The Mechanism of Electroacupuncture at the "Siguan" Acupoints in Alleviating Post-Stroke Depression. Description: Li, Zhuoyan, et al. Modulating Gut Microbiota: The Mechanism of Electroacupuncture at the "Siguan" Acupoints in Alleviating Post-Stroke Depression. ''Neuropsychiatr Dis Treat''. 2025; '''21''': 281-294
Prominence of Microbiota to Predict Fibrous Stenosis in Crohn's Disease. Description: Yang, Xue, et al. Prominence of Microbiota to Predict Fibrous Stenosis in Crohn's Disease. ''J Inflamm Res''. 2025; '''18''': 1413-1423
Proteomic and N-glycosylation analysis of fertile egg white during storage and incubation in chickens. Description: Dai, Daqing, et al. Proteomic and N-glycosylation analysis of fertile egg white during storage and incubation in chickens. ''Poult Sci''. 2025 Jan; '''104''' (1):104526
Sludge water: a potential pathway for the spread of antibiotic resistance and pathogenic bacteria from hospitals to the environment. Description: Zhao, Bingxuan, et al. Sludge water: a potential pathway for the spread of antibiotic resistance and pathogenic bacteria from hospitals to the environment. ''Front Microbiol''. 2025; '''16''': 1492128
The assembly and annotation of two teinturier grapevine varieties, Dakapo and Rubired. Description: Ritter, Eleanore J, et al. The assembly and annotation of two teinturier grapevine varieties, Dakapo and Rubired. ''GigaByte''. 2025; '''2025''': gigabyte149
The genome sequence of a leafhopper, Allygus modestus Scott, 1876. Description: Fowler, Keith. The genome sequence of a leafhopper, Allygus modestus Scott, 1876. ''Wellcome Open Res''. 2025; '''10''': 9
The genome sequence of a sawfly, Abia candens Konow, 1887. Description: Cunningham, Andrew, et al. The genome sequence of a sawfly, Abia candens Konow, 1887. ''Wellcome Open Res''. 2025; '''10''': 2
The genome sequence of Red Underwing, Catocala nupta Linnaeus, 1767. Description: Boyes, Douglas, et al. The genome sequence of Red Underwing, Catocala nupta Linnaeus, 1767. ''Wellcome Open Res''. 2025; '''10''': 36
The genome sequence of the European Corn Borer, Ostrinia nubilalis Hubner, 1796. Description: Boyes, Douglas, et al. The genome sequence of the European Corn Borer, Ostrinia nubilalis Hubner, 1796. ''Wellcome Open Res''. 2025; '''10''': 12
The genome sequence of the liver fluke Opisthorchis viverrini (Poirier, 1886) Stiles & Hassall, 1896. Description: Wangwiwatsin, Arporn, et al. The genome sequence of the liver fluke Opisthorchis viverrini (Poirier, 1886) Stiles & Hassall, 1896. ''Wellcome Open Res''. 2025; '''10''': 1
The genome sequence of the red fox, Vulpes vulpes (Linnaeus, 1758). Description: Lopez Colom, Rosa, et al. The genome sequence of the red fox, Vulpes vulpes (Linnaeus, 1758). ''Wellcome Open Res''. 2025; '''10''': 13
The impact of straw and its post-pyrolysis incorporation on functional microbes and mineralization of organic carbon in yellow paddy soil. Description: Wang, Fangchi, et al. The impact of straw and its post-pyrolysis incorporation on functional microbes and mineralization of organic carbon in yellow paddy soil. ''PLoS One''. 2025; '''20''' (1):e0314984
The intestinal microbial community and function of Riptortus pedestris at different developmental stages and its effects on development. Description: Wang, Yanbin, et al. The intestinal microbial community and function of Riptortus pedestris at different developmental stages and its effects on development. ''Front Microbiol''. 2025; '''16''': 1517280
Transcriptome analysis of jejunal mucosal tissue in breeder hens exposed to acute heat stress. Description: Zhu, Yongcai, et al. Transcriptome analysis of jejunal mucosal tissue in breeder hens exposed to acute heat stress. ''Poult Sci''. 2025 Jan; '''104''' (1):104532
Transplantation of engineered endothelial progenitor cells with H19 overexpression promotes arterial reendothelialization and inhibits neointimal hyperplasia. Description: Ye, Yanchen, et al. Transplantation of engineered endothelial progenitor cells with H19 overexpression promotes arterial reendothelialization and inhibits neointimal hyperplasia. ''J Tissue Eng''. 2025 Jan-Dec; '''16''': 20417314251315959
Tunable piezoelectric PLLA nanofiber membranes for enhanced mandibular repair with optimal self-powering stimulation. Description: Chen, Shuo, et al. Tunable piezoelectric PLLA nanofiber membranes for enhanced mandibular repair with optimal self-powering stimulation. ''Regen Biomater''. 2025; '''12''': rbae150
Unraveling the microecological mechanisms of phosphate-solubilizing Pseudomonas asiatica JP233 through metagenomics: insights into the roles of rhizosphere microbiota and predatory bacteria. Description: Tang, Yuhan, et al. Unraveling the microecological mechanisms of phosphate-solubilizing Pseudomonas asiatica JP233 through metagenomics: insights into the roles of rhizosphere microbiota and predatory bacteria. ''Front Microbiol''. 2025; '''16''': 1538117
Abundant and active community members respond to diel cycles in hot spring phototrophic mats. Description: Shelton, Amanda N, et al. Abundant and active community members respond to diel cycles in hot spring phototrophic mats. ''ISME J''. 2025 Jan 2; '''19''' (1):
Array of metabolic pathways in a kleptoplastidic foraminiferan protist supports chemoautotrophy in dark, euxinic seafloor sediments. Description: Gomaa, Fatma, et al. Array of metabolic pathways in a kleptoplastidic foraminiferan protist supports chemoautotrophy in dark, euxinic seafloor sediments. ''ISME J''. 2025 Jan 2; '''19''' (1):
Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina. Description: Wang, Gui-Fang, et al. Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina. ''Sci Data''. 2025 Jan 2; '''12''' (1):2
Heavier Diferrocenylpnictogenium Ions. Description: Stoian, Corina, et al. Heavier Diferrocenylpnictogenium Ions. ''Chemistry''. 2025 Jan 2; '''31''' (1):e202403555
Polymerization of dietary fructans differentially affects interactions among intestinal microbiota of colitis mice. Description: Xiao, Yaqin, et al. Polymerization of dietary fructans differentially affects interactions among intestinal microbiota of colitis mice. ''ISME J''. 2025 Jan 2; '''19''' (1):
Protozoa-enhanced conjugation frequency alters the dissemination of soil antibiotic resistance. Description: Lin, Chenshuo, et al. Protozoa-enhanced conjugation frequency alters the dissemination of soil antibiotic resistance. ''ISME J''. 2025 Jan 2; '''19''' (1):
Phylotranscriptomics resolved phylogenetic relationships and divergence time between 20 golden camellia species. Description: Xie, Yang-Jiao, et al. Phylotranscriptomics resolved phylogenetic relationships and divergence time between 20 golden camellia species. ''Sci Rep''. 2025 Jan 3; '''15''' (1):699
Analysis of full length transcriptome and resistance characteristics of Atraphaxis bracteata under drought. Description: He, Cai, et al. Analysis of full length transcriptome and resistance characteristics of Atraphaxis bracteata under drought. ''Sci Rep''. 2025 Jan 4; '''15''' (1):807
Chromosome-level genome assembly of Salvia sclarea. Description: Choi, Sehyun, et al. Chromosome-level genome assembly of Salvia sclarea. ''Sci Data''. 2025 Jan 4; '''12''' (1):14
Pathogen Detection and Resistome Analysis in Healthy Shelter Dogs Using Whole Metagenome Sequencing. Description: Shringi, Smriti, et al. Pathogen Detection and Resistome Analysis in Healthy Shelter Dogs Using Whole Metagenome Sequencing. ''Pathogens''. 2025 Jan 5; '''14''' (1):
A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity. Description: Oriowo, Temitope Opeyemi, et al. A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus) provide evidence of haplotype diversity. ''Gigascience''. 2025 Jan 6; '''14''':
A telomere-to-telomere genome assembly of koi carp (Cyprinus carpio) using long reads and Hi-C technology. Description: Yuan, Jiandong, et al. A telomere-to-telomere genome assembly of koi carp (Cyprinus carpio) using long reads and Hi-C technology. ''Gigascience''. 2025 Jan 6; '''14''':
BFVD-a large repository of predicted viral protein structures. Description: Kim, Rachel Seongeun, et al. BFVD-a large repository of predicted viral protein structures. ''Nucleic Acids Res''. 2025 Jan 6; '''53''' (D1):D340-D347
Chromosome-level genome assembly of Pinus massoniana provides insights into conifer adaptive evolution. Description: Chen, Hu, et al. Chromosome-level genome assembly of Pinus massoniana provides insights into conifer adaptive evolution. ''Gigascience''. 2025 Jan 6; '''14''':
Depth heterogeneity of lignin-degrading microbiome and organic carbon processing in mangrove sediments. Description: Ding, Jijuan, et al. Depth heterogeneity of lignin-degrading microbiome and organic carbon processing in mangrove sediments. ''NPJ Biofilms Microbiomes''. 2025 Jan 6; '''11''' (1):5
Engineering of CRISPR-Cas PAM recognition using deep learning of vast evolutionary data. Description: Nayfach, Stephen, et al. Engineering of CRISPR-Cas PAM recognition using deep learning of vast evolutionary data. ''bioRxiv''. 2025 Jan 6;
FunCoup 6: advancing functional association networks across species with directed links and improved user experience. Description: Buzzao, Davide, et al. FunCoup 6: advancing functional association networks across species with directed links and improved user experience. ''Nucleic Acids Res''. 2025 Jan 6; '''53''' (D1):D658-D671
PIPdb: a comprehensive plasmid sequence resource for tracking the horizontal transfer of pathogenic factors and antimicrobial resistance genes. Description: Zhu, Qianhui, et al. PIPdb: a comprehensive plasmid sequence resource for tracking the horizontal transfer of pathogenic factors and antimicrobial resistance genes. ''Nucleic Acids Res''. 2025 Jan 6; '''53''' (D1):D169-D178
PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools. Description: Li, Yinhu, et al. PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools. ''Nucleic Acids Res''. 2025 Jan 6; '''53''' (D1):D179-D188
The complete genome assembly of Astragalus membranaceus: enabling more accurate genetic research. Description: Qin, Huibin, et al. The complete genome assembly of Astragalus membranaceus: enabling more accurate genetic research. ''Gigascience''. 2025 Jan 6; '''14''':
The genome of Hippophae salicifolia provides new insights into the sexual differentiation of sea buckthorn. Description: Chen, Mingyue, et al. The genome of Hippophae salicifolia provides new insights into the sexual differentiation of sea buckthorn. ''Gigascience''. 2025 Jan 6; '''14''':
The RodentGPOmics Atlas: a comprehensive database of rodent biology for genomes and pathogens. Description: Jiang, Zhiwen, et al. The RodentGPOmics Atlas: a comprehensive database of rodent biology for genomes and pathogens. ''Nucleic Acids Res''. 2025 Jan 6; '''53''' (D1):D1144-D1150
The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus. Description: Jiang, Dongyue, et al. The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus. ''Gigascience''. 2025 Jan 6; '''14''':
Antibiotic resistance genotype, phenotype, and clinical outcomes in patients with Gram-negative infections at Rabin Medical Center in Israel. Description: Koch, Rachelle E, et al. Antibiotic resistance genotype, phenotype, and clinical outcomes in patients with Gram-negative infections at Rabin Medical Center in Israel. ''Microbiol Spectr''. 2025 Jan 7; '''13''' (1):e0038324
Chromosome-level genome assemblies of sunflower oilseed and confectionery cultivars. Description: Yi, Liuxi, et al. Chromosome-level genome assemblies of sunflower oilseed and confectionery cultivars. ''Sci Data''. 2025 Jan 7; '''12''' (1):24
Legionella pneumophila IrsA, a novel, iron-regulated exoprotein that facilitates growth in low-iron conditions and modulates biofilm formation. Description: Lopez, Alberto E, et al. Legionella pneumophila IrsA, a novel, iron-regulated exoprotein that facilitates growth in low-iron conditions and modulates biofilm formation. ''Microbiol Spectr''. 2025 Jan 7; '''13''' (1):e0231324
Transcriptomic Insights into Post-Spawning Death and Muscle Atrophy in Ayu (Plecoglossus altivelis). Description: Liang, Jiancheng, et al. Transcriptomic Insights into Post-Spawning Death and Muscle Atrophy in Ayu (Plecoglossus altivelis). ''Int J Mol Sci''. 2025 Jan 7; '''26''' (2):
Characterization of Esocid Herpesvirus 1 (EsHV1) from Europe. Description: Leijon, Mikael, et al. Characterization of Esocid Herpesvirus 1 (EsHV1) from Europe. ''Pathogens''. 2025 Jan 8; '''14''' (1):
Characterization of Shigella flexneri serotype 6 strains from geographically diverse low- and middle-income countries. Description: Gabor, Caitlin E, et al. Characterization of Shigella flexneri serotype 6 strains from geographically diverse low- and middle-income countries. ''mBio''. 2025 Jan 8; '''16''' (1):e0221024
Effects of oil pollution on the growth and rhizosphere microbial community of Calamagrostis epigejos. Description: Wei, Ying, et al. Effects of oil pollution on the growth and rhizosphere microbial community of Calamagrostis epigejos. ''Sci Rep''. 2025 Jan 8; '''15''' (1):1278
Variation in human gut microbiota impacts tamoxifen pharmacokinetics. Description: Alam, Yasmine, et al. Variation in human gut microbiota impacts tamoxifen pharmacokinetics. ''mBio''. 2025 Jan 8; '''16''' (1):e0167924
Domainator, a flexible software suite for domain-based annotation and neighborhood analysis, identifies proteins involved in antiviral systems. Description: Johnson, Sean R, et al. Domainator, a flexible software suite for domain-based annotation and neighborhood analysis, identifies proteins involved in antiviral systems. ''Nucleic Acids Res''. 2025 Jan 11; '''53''' (2):
Lipid metabolism and microbial regulation analyses provide insights into the energy-saving strategies of hibernating snakes. Description: Wei, Yuting, et al. Lipid metabolism and microbial regulation analyses provide insights into the energy-saving strategies of hibernating snakes. ''Commun Biol''. 2025 Jan 12; '''8''' (1):45
Cytotoxic Activity of Bisphosphonic Derivatives Obtained by the Michaelis-Arbuzov or the Pudovik Reaction. Description: Szalai, Zsuzsanna, et al. Cytotoxic Activity of Bisphosphonic Derivatives Obtained by the Michaelis-Arbuzov or the Pudovik Reaction. ''Pharmaceuticals (Basel)''. 2025 Jan 13; '''18''' (1):
Functional evolution and diversification of CYP82D subfamily members have shaped flavonoid diversification in the genus Scutellaria. Description: Qiu, Shi, et al. Functional evolution and diversification of CYP82D subfamily members have shaped flavonoid diversification in the genus Scutellaria. ''Plant Commun''. 2025 Jan 13; '''6''' (1):101134
Genome architecture of the allotetraploid wild grass Aegilops ventricosa reveals its evolutionary history and contributions to wheat improvement. Description: Liu, Zehou, et al. Genome architecture of the allotetraploid wild grass Aegilops ventricosa reveals its evolutionary history and contributions to wheat improvement. ''Plant Commun''. 2025 Jan 13; '''6''' (1):101131
Growth of microbes in competitive lifestyles promotes increased ARGs in soil microbiota: insights based on genetic traits. Description: Liu, Zishu, et al. Growth of microbes in competitive lifestyles promotes increased ARGs in soil microbiota: insights based on genetic traits. ''Microbiome''. 2025 Jan 13; '''13''' (1):8
Molecular Epidemiological Characteristics of Staphylococcus pseudintermedius, Staphylococcus coagulans, and Coagulase-Negative Staphylococci Cultured from Clinical Canine Skin and Ear Samples in Queensland. Description: Horsman, Sara, et al. Molecular Epidemiological Characteristics of Staphylococcus pseudintermedius, Staphylococcus coagulans, and Coagulase-Negative Staphylococci Cultured from Clinical Canine Skin and Ear Samples in Queensland. ''Antibiotics (Basel)''. 2025 Jan 13; '''14''' (1):
Antimicrobial Potential of Secalonic Acids from Arctic-Derived Penicillium chrysogenum INA 01369. Description: Roshka, Yulia A, et al. Antimicrobial Potential of Secalonic Acids from Arctic-Derived Penicillium chrysogenum INA 01369. ''Antibiotics (Basel)''. 2025 Jan 14; '''14''' (1):
Changes in Microbial Community Diversity and the Formation Mechanism of Flavor Metabolites in Industrial-Scale Spontaneous Fermentation of Cabernet Sauvignon Wines. Description: Bai, Chunyan, et al. Changes in Microbial Community Diversity and the Formation Mechanism of Flavor Metabolites in Industrial-Scale Spontaneous Fermentation of Cabernet Sauvignon Wines. ''Foods''. 2025 Jan 14; '''14''' (2):
Characterization of chemosensory genes in the subterranean pest Gryllotalpa Orientalis based on genome assembly and transcriptome comparison. Description: Chudhary, Amna, et al. Characterization of chemosensory genes in the subterranean pest Gryllotalpa Orientalis based on genome assembly and transcriptome comparison. ''BMC Genomics''. 2025 Jan 14; '''26''' (1):33
Integrated Metabolome, Transcriptome, and Physiological Analysis of the Flavonoid and Phenylethanol Glycosides Accumulation in Wild Phlomoides rotata Roots from Different Habitats. Description: Li, Zuxia, et al. Integrated Metabolome, Transcriptome, and Physiological Analysis of the Flavonoid and Phenylethanol Glycosides Accumulation in Wild Phlomoides rotata Roots from Different Habitats. ''Int J Mol Sci''. 2025 Jan 14; '''26''' (2):
Modeling bacterial interactions uncovers the importance of outliers in the coastal lignin-degrading consortium. Description: Peng, Qiannan, et al. Modeling bacterial interactions uncovers the importance of outliers in the coastal lignin-degrading consortium. ''Nat Commun''. 2025 Jan 14; '''16''' (1):639
Enhanced UV-B photoprotection activity of carotenoids from the novel Arthrobacter sp. strain LAPM80 isolated from King George Island, Antarctica. Description: Paredes Contreras, Beatriz Vivian, et al. Enhanced UV-B photoprotection activity of carotenoids from the novel Arthrobacter sp. strain LAPM80 isolated from King George Island, Antarctica. ''Heliyon''. 2025 Jan 15; '''11''' (1):e41400
Functional genomics implicates ebony in the black pupae phenotype of tephritid fruit flies. Description: Paulo, Daniel F, et al. Functional genomics implicates ebony in the black pupae phenotype of tephritid fruit flies. ''Commun Biol''. 2025 Jan 15; '''8''' (1):60
The expansion and loss of specific olfactory genes in relatives of parasitic lice, the stored-product psocids (Psocodea: Liposcelididae). Description: Sun, Jun, et al. The expansion and loss of specific olfactory genes in relatives of parasitic lice, the stored-product psocids (Psocodea: Liposcelididae). ''BMC Genomics''. 2025 Jan 15; '''26''' (1):41
Core microbe Bifidobacterium in the hindgut of calves improves the growth phenotype of young hosts by regulating microbial functions and host metabolism. Description: Zhuang, Yimin, et al. Core microbe Bifidobacterium in the hindgut of calves improves the growth phenotype of young hosts by regulating microbial functions and host metabolism. ''Microbiome''. 2025 Jan 16; '''13''' (1):13
Gene content of seawater microbes is a strong predictor of water chemistry across the Great Barrier Reef. Description: Terzin, Marko, et al. Gene content of seawater microbes is a strong predictor of water chemistry across the Great Barrier Reef. ''Microbiome''. 2025 Jan 16; '''13''' (1):11
Proteomic dataset of sorghum leaf and root responses to single and combined drought and heat stress. Description: Ali, Ali Elnaeim Elbasheir, et al. Proteomic dataset of sorghum leaf and root responses to single and combined drought and heat stress. ''Sci Data''. 2025 Jan 17; '''12''' (1):97
Association Analysis of the Genomic and Functional Characteristics of Halotolerant Glutamicibacter endophyticus J2-5-19 from the Rhizosphere of Suaeda salsa. Description: Sun, Longhao, et al. Association Analysis of the Genomic and Functional Characteristics of Halotolerant Glutamicibacter endophyticus J2-5-19 from the Rhizosphere of Suaeda salsa. ''Microorganisms''. 2025 Jan 18; '''13''' (1):
Comparative metagenomics reveals the metabolic flexibility of coastal prokaryotic microbiomes contributing to lignin degradation. Description: Peng, Qiannan, et al. Comparative metagenomics reveals the metabolic flexibility of coastal prokaryotic microbiomes contributing to lignin degradation. ''Biotechnol Biofuels Bioprod''. 2025 Jan 18; '''18''' (1):9
getphylo: rapid and automatic generation of multi-locus phylogenetic trees. Description: Booth, T J, et al. getphylo: rapid and automatic generation of multi-locus phylogenetic trees. ''BMC Bioinformatics''. 2025 Jan 18; '''26''' (1):21
Predicting metabolite response to dietary intervention using deep learning. Description: Wang, Tong, et al. Predicting metabolite response to dietary intervention using deep learning. ''Nat Commun''. 2025 Jan 18; '''16''' (1):815
Does preeclampsia impact the gut microbiota of preterm offspring during early infancy? Description: Chen, Yang, et al. Does preeclampsia impact the gut microbiota of preterm offspring during early infancy? ''J Transl Med''. 2025 Jan 19; '''23''' (1):84
De novo transcriptome assembly of the Mediterranean sea-rock pool mosquitoes Aedes mariae and Aedes zammitii. Description: Mastrantonio, Valentina, et al. De novo transcriptome assembly of the Mediterranean sea-rock pool mosquitoes Aedes mariae and Aedes zammitii. ''Sci Data''. 2025 Jan 20; '''12''' (1):115
Ecogenomic insights into the resilience of keystone Blastococcus Species in extreme environments: a comprehensive analysis. Description: Sbissi, Imed, et al. Ecogenomic insights into the resilience of keystone Blastococcus Species in extreme environments: a comprehensive analysis. ''BMC Genomics''. 2025 Jan 20; '''26''' (1):51
Gut microbiota profiles of sympatric snub-nosed monkeys and macaques in Qinghai-Tibetan Plateau show influence of phylogeny over diet. Description: Zhang, Chen, et al. Gut microbiota profiles of sympatric snub-nosed monkeys and macaques in Qinghai-Tibetan Plateau show influence of phylogeny over diet. ''Commun Biol''. 2025 Jan 20; '''8''' (1):95
The Synthesis, Crystal Structure, Modification, and Cytotoxic Activity of alpha-Hydroxy-Alkylphosphonates. Description: Szalai, Zsuzsanna, et al. The Synthesis, Crystal Structure, Modification, and Cytotoxic Activity of alpha-Hydroxy-Alkylphosphonates. ''Molecules''. 2025 Jan 20; '''30''' (2):
Genome sequences of four Ixodes species expands understanding of tick evolution. Description: Cerqueira de Araujo, Alexandra, et al. Genome sequences of four Ixodes species expands understanding of tick evolution. ''BMC Biol''. 2025 Jan 21; '''23''' (1):17
Gut Microbial Changes Associated With Obesity in Youth With Type 1 Diabetes. Description: Ismail, Heba M, et al. Gut Microbial Changes Associated With Obesity in Youth With Type 1 Diabetes. ''J Clin Endocrinol Metab''. 2025 Jan 21; '''110''' (2):364-373
Hindguts of Kyphosus sydneyanus harbor phylogenetically and genomically distinct Alistipes capable of degrading algal polysaccharides and diazotrophy. Description: Facimoto, Cesar T, et al. Hindguts of Kyphosus sydneyanus harbor phylogenetically and genomically distinct Alistipes capable of degrading algal polysaccharides and diazotrophy. ''mSystems''. 2025 Jan 21; '''10''' (1):e0100724
Response of the gut microbiome and metabolome to dietary fiber in healthy dogs. Description: Bhosle, Amrisha, et al. Response of the gut microbiome and metabolome to dietary fiber in healthy dogs. ''mSystems''. 2025 Jan 21; '''10''' (1):e0045224
A legume-enriched diet improves metabolic health in prediabetes mediated through gut microbiome: a randomized controlled trial. Description: Wu, Xiaorong, et al. A legume-enriched diet improves metabolic health in prediabetes mediated through gut microbiome: a randomized controlled trial. ''Nat Commun''. 2025 Jan 22; '''16''' (1):942
Fusion, fission, and scrambling of the bilaterian genome in Bryozoa. Description: Lewin, Thomas D, et al. Fusion, fission, and scrambling of the bilaterian genome in Bryozoa. ''Genome Res''. 2025 Jan 22; '''35''' (1):78-92
Rare earth benzene tetraanion-bridged amidinate complexes. Description: Jin, Peng-Bo, et al. Rare earth benzene tetraanion-bridged amidinate complexes. ''Chem Sci''. 2025 Jan 22; '''16''' (4):1907-1924
Effects of Acorns on Subcutaneous Fat Deposition in Yuxi Black Pigs by Transcriptomic Analysis. Description: Sun, Zhe, et al. Effects of Acorns on Subcutaneous Fat Deposition in Yuxi Black Pigs by Transcriptomic Analysis. ''Metabolites''. 2025 Jan 23; '''15''' (2):
Unveiling the genetic architecture of barley embryo: QTL mapping, candidate genes identification and its relationship with kernel size and early vigour. Description: Chen, Xiaoxia, et al. Unveiling the genetic architecture of barley embryo: QTL mapping, candidate genes identification and its relationship with kernel size and early vigour. ''Theor Appl Genet''. 2025 Jan 23; '''138''' (1):32
Chromosome-scale genome dynamics reveal signatures of independent haplotype evolution in the ancient asexual mite Platynothrus peltifer. Description: Oztoprak, Husna, et al. Chromosome-scale genome dynamics reveal signatures of independent haplotype evolution in the ancient asexual mite Platynothrus peltifer. ''Sci Adv''. 2025 Jan 24; '''11''' (4):eadn0817
Seed microbiomes promote Astragalus mongholicus seed germination through pathogen suppression and cellulose degradation. Description: Li, Da, et al. Seed microbiomes promote Astragalus mongholicus seed germination through pathogen suppression and cellulose degradation. ''Microbiome''. 2025 Jan 24; '''13''' (1):23
Super pan-genome reveals extensive genomic variations associated with phenotypic divergence in Actinidia. Description: Yu, Xiaofen, et al. Super pan-genome reveals extensive genomic variations associated with phenotypic divergence in Actinidia. ''Mol Hortic''. 2025 Jan 24; '''5''' (1):4
zol and fai: large-scale targeted detection and evolutionary investigation of gene clusters. Description: Salamzade, Rauf, et al. zol and fai: large-scale targeted detection and evolutionary investigation of gene clusters. ''Nucleic Acids Res''. 2025 Jan 24; '''53''' (3):
Warming-driven migration of enterotypes mediates host health and disease statuses in ectotherm Litopenaeus vannamei. Description: Zeng, Shenzheng, et al. Warming-driven migration of enterotypes mediates host health and disease statuses in ectotherm Litopenaeus vannamei. ''Commun Biol''. 2025 Jan 26; '''8''' (1):126
Chromosome-scale genome assembly of Korean goosegrass (Eleusine indica). Description: Lee, Solji, et al. Chromosome-scale genome assembly of Korean goosegrass (Eleusine indica). ''Sci Data''. 2025 Jan 27; '''12''' (1):156
Effectiveness of Video Teletherapy in Treating Obsessive-Compulsive Disorder in Children and Adolescents With Exposure and Response Prevention: Retrospective Longitudinal Observational Study. Description: Feusner, Jamie D, et al. Effectiveness of Video Teletherapy in Treating Obsessive-Compulsive Disorder in Children and Adolescents With Exposure and Response Prevention: Retrospective Longitudinal Observational Study. ''J Med Internet Res''. 2025 Jan 27; '''27''': e66715
Co-inoculation with Bacillus thuringiensis RZ2MS9 and rhizobia improves the soybean development and modulates soil functional diversity. Description: Fonseca de Souza, Leandro, et al. Co-inoculation with Bacillus thuringiensis RZ2MS9 and rhizobia improves the soybean development and modulates soil functional diversity. ''FEMS Microbiol Ecol''. 2025 Jan 28; '''101''' (2):
Reductive acetogenesis is a dominant process in the ruminant hindgut. Description: Li, Qiushuang, et al. Reductive acetogenesis is a dominant process in the ruminant hindgut. ''Microbiome''. 2025 Jan 28; '''13''' (1):28
Development of Chimera AMP-Endolysin with Wider Spectra Against Gram-Negative Bacteria Using High-Throughput Assay. Description: Kogawa, Masato, et al. Development of Chimera AMP-Endolysin with Wider Spectra Against Gram-Negative Bacteria Using High-Throughput Assay. ''Viruses''. 2025 Jan 30; '''17''' (2):
Adaptive modification of antiviral defense systems in microbial community under Cr-induced stress. Description: Huang, Dan, et al. Adaptive modification of antiviral defense systems in microbial community under Cr-induced stress. ''Microbiome''. 2025 Jan 31; '''13''' (1):34
Assessing environmental gradients in relation to dark CO(2) fixation in estuarine wetland microbiomes. Description: Gruterich, Luise, et al. Assessing environmental gradients in relation to dark CO(2) fixation in estuarine wetland microbiomes. ''Appl Environ Microbiol''. 2025 Jan 31; '''91''' (1):e0217724
Genomic and metabolic characterization of Trueperella pyogenes isolated from domestic and wild animals. Description: Magossi, Gabriela, et al. Genomic and metabolic characterization of Trueperella pyogenes isolated from domestic and wild animals. ''Appl Environ Microbiol''. 2025 Jan 31; '''91''' (1):e0172524
Microbiome dynamics and functional profiles in deep-sea wood-fall micro-ecosystem: insights into drive pattern of community assembly, biogeochemical processes, and lignocellulose degradation. Description: Bao, Zeming, et al. Microbiome dynamics and functional profiles in deep-sea wood-fall micro-ecosystem: insights into drive pattern of community assembly, biogeochemical processes, and lignocellulose degradation. ''Appl Environ Microbiol''. 2025 Jan 31; '''91''' (1):e0216524
Taxonomic diversity and functional potential of microbial communities in oyster calcifying fluid. Description: Unzueta-Martinez, Andrea, et al. Taxonomic diversity and functional potential of microbial communities in oyster calcifying fluid. ''Appl Environ Microbiol''. 2025 Jan 31; '''91''' (1):e0109424
Temporal dynamics of soil microbial C and N cycles with GHG fluxes in the transition from tropical peatland forest to oil palm plantation. Description: Midot, Frazer, et al. Temporal dynamics of soil microbial C and N cycles with GHG fluxes in the transition from tropical peatland forest to oil palm plantation. ''Appl Environ Microbiol''. 2025 Jan 31; '''91''' (1):e0198624
Convergent Patterns of Karyotype Evolution Underlying Karyotype Uniformity in Conifers. Description: Zhang, Ren-Gang, et al. Convergent Patterns of Karyotype Evolution Underlying Karyotype Uniformity in Conifers. ''Adv Sci (Weinh)''. 2025 Feb; '''12''' (7):e2411098
Dataset of shotgun metagenomic evaluation of Sorghum bicolor rhizosphere microbiome in soils preceded by Glycine max. Description: Babalola, Olubukola Oluranti, et al. Dataset of shotgun metagenomic evaluation of Sorghum bicolor rhizosphere microbiome in soils preceded by Glycine max. ''Data Brief''. 2025 Feb; '''58''': 111270
Duodenal-jejunal bypass ameliorates MASLD in rats by regulating gut microbiota and bile acid metabolism through FXR pathways. Description: Ren, Mengting, et al. Duodenal-jejunal bypass ameliorates MASLD in rats by regulating gut microbiota and bile acid metabolism through FXR pathways. ''Hepatol Commun''. 2025 Feb 1; '''9''' (2):
Dynamics of antibiotic resistance in poultry farms via multivector analysis. Description: Shen, Dan, et al. Dynamics of antibiotic resistance in poultry farms via multivector analysis. ''Poult Sci''. 2025 Feb; '''104''' (2):104673
Early diagnosis, disease stage and prognosis in wild-type transthyretin amyloid cardiomyopathy: The DIAMOND study. Description: Tini, Giacomo, et al. Early diagnosis, disease stage and prognosis in wild-type transthyretin amyloid cardiomyopathy: The DIAMOND study. ''ESC Heart Fail''. 2025 Feb; '''12''' (1):379-388
Ecological dynamics of Enterobacteriaceae in the human gut microbiome across global populations. Description: Yin, Qi, et al. Ecological dynamics of Enterobacteriaceae in the human gut microbiome across global populations. ''Nat Microbiol''. 2025 Feb; '''10''' (2):541-553
ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro. Description: Daruka, Lejla, et al. ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro. ''Nat Microbiol''. 2025 Feb; '''10''' (2):313-331
Gut Commensal Barnesiella Intestinihominis Ameliorates Hyperglycemia and Liver Metabolic Disorders. Description: Zhang, Ye, et al. Gut Commensal Barnesiella Intestinihominis Ameliorates Hyperglycemia and Liver Metabolic Disorders. ''Adv Sci (Weinh)''. 2025 Feb; '''12''' (8):e2411181
The expanded genome of Hexamita inflata, a free-living diplomonad. Description: Akdeniz, Zeynep, et al. The expanded genome of Hexamita inflata, a free-living diplomonad. ''Sci Data''. 2025 Feb 1; '''12''' (1):192
Towards a unifying phylogenomic framework for tailed phages. Description: Weinheimer, Alaina R, et al. Towards a unifying phylogenomic framework for tailed phages. ''PLoS Genet''. 2025 Feb; '''21''' (2):e1011595
A novel decomposer-exploiter interaction framework of plant residue microbial decomposition. Description: Miao, Youzhi, et al. A novel decomposer-exploiter interaction framework of plant residue microbial decomposition. ''Genome Biol''. 2025 Feb 3; '''26''' (1):20
Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly Bemisia tabaci. Description: Colinet, Dominique, et al. Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly Bemisia tabaci. ''Genome Biol Evol''. 2025 Feb 3; '''17''' (2):
Hookworm genes encoding intestinal excreted-secreted proteins are transcriptionally upregulated in response to the host's immune system. Description: Schwarz, Erich M, et al. Hookworm genes encoding intestinal excreted-secreted proteins are transcriptionally upregulated in response to the host's immune system. ''bioRxiv''. 2025 Feb 3;
Phylogeography Analysis Reveals Rabies Epidemiology, Evolution, and Transmission in the Philippines. Description: Zhang, Liang, et al. Phylogeography Analysis Reveals Rabies Epidemiology, Evolution, and Transmission in the Philippines. ''Mol Biol Evol''. 2025 Feb 3; '''42''' (2):
Seasonal recurrence and modular assembly of an Arctic pelagic marine microbiome. Description: Priest, Taylor, et al. Seasonal recurrence and modular assembly of an Arctic pelagic marine microbiome. ''Nat Commun''. 2025 Feb 3; '''16''' (1):1326
Whole-Genome Sequencing and Fine Map Analysis of Pholiota nameko. Description: He, Yan, et al. Whole-Genome Sequencing and Fine Map Analysis of Pholiota nameko. ''J Fungi (Basel)''. 2025 Feb 3; '''11''' (2):
A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa. Description: Fujiwara, Kazumichi, et al. A Near Complete Genome Assembly of the Oshima Cherry Cerasus speciosa. ''Sci Data''. 2025 Feb 4; '''12''' (1):162
Dietary organic acid blend modulates hemato-immunological parameters, digestive and reproductive performances in red tilapia (Oreochromis niloticus x O. mossambicus) broodstock. Description: El-Sayed, Abdel-Fattah M, et al. Dietary organic acid blend modulates hemato-immunological parameters, digestive and reproductive performances in red tilapia (Oreochromis niloticus x O. mossambicus) broodstock. ''Fish Physiol Biochem''. 2025 Feb 4; '''51''' (1):41
Genomic insights into habitat adaptation of Lactobacillus species. Description: Mejia-Caballero, Alejandra, et al. Genomic insights into habitat adaptation of Lactobacillus species. ''World J Microbiol Biotechnol''. 2025 Feb 4; '''41''' (2):61
Open Label Vancomycin in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Improved Colonic Disease Activity and Associations With Changes in Host-Microbiome-Metabolomic Signatures. Description: Quraishi, Mohammed Nabil, et al. Open Label Vancomycin in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Improved Colonic Disease Activity and Associations With Changes in Host-Microbiome-Metabolomic Signatures. ''J Crohns Colitis''. 2025 Feb 4; '''19''' (2):
A gut-derived Streptococcus salivarius produces the novel nisin variant designated nisin G and inhibits Fusobacterium nucleatum in a model of the human distal colon microbiome. Description: Lawrence, Garreth W, et al. A gut-derived Streptococcus salivarius produces the novel nisin variant designated nisin G and inhibits Fusobacterium nucleatum in a model of the human distal colon microbiome. ''mBio''. 2025 Feb 5; '''16''' (2):e0157324
Metabolic redundancy and specialisation of novel sulfide-oxidizing Sulfurimonas and Sulfurovum along the brine-seawater interface of the Kebrit Deep. Description: Alamoudi, Rayyan, et al. Metabolic redundancy and specialisation of novel sulfide-oxidizing Sulfurimonas and Sulfurovum along the brine-seawater interface of the Kebrit Deep. ''Environ Microbiome''. 2025 Feb 5; '''20''' (1):19
Prokaryotic cellulase gene clusters derived from 2,305 metagenomes. Description: Song, Bing, et al. Prokaryotic cellulase gene clusters derived from 2,305 metagenomes. ''Sci Data''. 2025 Feb 5; '''12''' (1):218
Genome Report: First whole genome assembly of Python regius (ball python), a model of extreme physiological and metabolic plasticity. Description: Hunt, Dakota R, et al. Genome Report: First whole genome assembly of Python regius (ball python), a model of extreme physiological and metabolic plasticity. ''bioRxiv''. 2025 Feb 6;
Metatranscriptomes-based sequence similarity networks uncover genetic signatures within parasitic freshwater microbial eukaryotes. Description: Monjot, Arthur, et al. Metatranscriptomes-based sequence similarity networks uncover genetic signatures within parasitic freshwater microbial eukaryotes. ''Microbiome''. 2025 Feb 6; '''13''' (1):43
Analysis of Volatile Metabolome and Transcriptome in Sweet Basil Under Drought Stress. Description: Zhou, Yuan, et al. Analysis of Volatile Metabolome and Transcriptome in Sweet Basil Under Drought Stress. ''Curr Issues Mol Biol''. 2025 Feb 11; '''47''' (2):
Genome Sequencing, Assembly, and Characterization of Cyberlindnera rhodanensis J52 as a Non-Saccharomyces Yeast with Ester-Enhancing Potential. Description: Shen, Yong, et al. Genome Sequencing, Assembly, and Characterization of Cyberlindnera rhodanensis J52 as a Non-Saccharomyces Yeast with Ester-Enhancing Potential. ''J Fungi (Basel)''. 2025 Feb 11; '''11''' (2):
PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis. Description: Wang, Luman, et al. PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis. ''Microbiome''. 2025 Feb 11; '''13''' (1):50
De novo Transcriptomic analysis to unveil the deltamethrin induced resistance mechanisms in Callosobruchus chinensis (L.). Description: Sharma, Pankaj, et al. De novo Transcriptomic analysis to unveil the deltamethrin induced resistance mechanisms in Callosobruchus chinensis (L.). ''Sci Rep''. 2025 Feb 12; '''15''' (1):5163
Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection. Description: Yu, Lu, et al. Transcriptomic, metabonomic and proteomic analyses reveal that terpenoids and flavonoids are required for Pinus koraiensis early defence against Bursaphelenchus xylophilus infection. ''BMC Plant Biol''. 2025 Feb 12; '''25''' (1):185
Structural and functional changes in the oral microbiome of patients with craniofacial microsomia. Description: Zang, Tianying, et al. Structural and functional changes in the oral microbiome of patients with craniofacial microsomia. ''Sci Rep''. 2025 Feb 13; '''15''' (1):5400
A chromosome-level genome assembly of Mylabris sibirica Fischer von Waldheim, 1823 (Coleoptera, Meloidae). Description: Shen, Chenhui, et al. A chromosome-level genome assembly of Mylabris sibirica Fischer von Waldheim, 1823 (Coleoptera, Meloidae). ''Sci Data''. 2025 Feb 14; '''12''' (1):269
Cold seeps are potential hotspots of deep-sea nitrogen loss driven by microorganisms across 21 phyla. Description: Jiang, Qiuyun, et al. Cold seeps are potential hotspots of deep-sea nitrogen loss driven by microorganisms across 21 phyla. ''Nat Commun''. 2025 Feb 14; '''16''' (1):1646
Characterization and comparison of gut microbiota in patients with acute pancreatitis by metagenomics and culturomics. Description: Gong, Liang, et al. Characterization and comparison of gut microbiota in patients with acute pancreatitis by metagenomics and culturomics. ''Heliyon''. 2025 Feb 15; '''11''' (3):e42243
Culture-dependent and -independent analyses reveal unique community structure and function in the external mycelial cortices of Ophiocordyceps sinensis. Description: Li, Na, et al. Culture-dependent and -independent analyses reveal unique community structure and function in the external mycelial cortices of Ophiocordyceps sinensis. ''BMC Microbiol''. 2025 Feb 17; '''25''' (1):78
A novel type of hemoglobin confers host-derived nitric oxide resistance to the opportunistic pathogen Acinetobacter baumannii. Description: Beas, Jordi Zamarreno, et al. A novel type of hemoglobin confers host-derived nitric oxide resistance to the opportunistic pathogen Acinetobacter baumannii. ''Sci Rep''. 2025 Feb 18; '''15''' (1):5969
Rhodamine6G and Hoechst33342 narrow BmrA conformational spectrum for a more efficient use of ATP. Description: Gobet, A, et al. Rhodamine6G and Hoechst33342 narrow BmrA conformational spectrum for a more efficient use of ATP. ''Nat Commun''. 2025 Feb 18; '''16''' (1):1745
Species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping with Argo. Description: Chen, Xi, et al. Species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping with Argo. ''Nat Commun''. 2025 Feb 18; '''16''' (1):1744
Haplotype-Phased Chromosome-Level Genome Assembly of Cryptoporus qinlingensis, a Typical Traditional Chinese Medicine Fungus. Description: Song, Yu, et al. Haplotype-Phased Chromosome-Level Genome Assembly of Cryptoporus qinlingensis, a Typical Traditional Chinese Medicine Fungus. ''J Fungi (Basel)''. 2025 Feb 19; '''11''' (2):
High-quality genome assembly and annotation of Thalassiosira rotula (synonym of Thalassiosira gravida). Description: Di Costanzo, F, et al. High-quality genome assembly and annotation of Thalassiosira rotula (synonym of Thalassiosira gravida). ''Sci Data''. 2025 Feb 20; '''12''' (1):310
M6A methyltransferase METTL3 promotes glucose metabolism hub gene expression and induces metabolic dysfunction-associated steatotic liver disease (MASLD). Description: Wang, Shuowen, et al. M6A methyltransferase METTL3 promotes glucose metabolism hub gene expression and induces metabolic dysfunction-associated steatotic liver disease (MASLD). ''BMC Genomics''. 2025 Feb 24; '''26''' (1):188
Bifidobacterium animalis subsp. lactis A6 ameliorates bone and muscle loss via modulating gut microbiota composition and enhancing butyrate production. Description: Chen, Ming, et al. Bifidobacterium animalis subsp. lactis A6 ameliorates bone and muscle loss via modulating gut microbiota composition and enhancing butyrate production. ''Bone Res''. 2025 Feb 25; '''13''' (1):28
Comprehensive analysis of Metacrinus rotundus full length transcriptome. Description: Li, Zhong, et al. Comprehensive analysis of Metacrinus rotundus full length transcriptome. ''Sci Rep''. 2025 Feb 25; '''15''' (1):6723
Insect-specific Alphamesonivirus-1 (Mesoniviridae) in lymph node and lung tissues from two horses with acute respiratory syndrome. Description: Jurisic, Lucija, et al. Insect-specific Alphamesonivirus-1 (Mesoniviridae) in lymph node and lung tissues from two horses with acute respiratory syndrome. ''J Virol''. 2025 Feb 25; '''99''' (2):e0214424
Amphibian skin bacteria contain a wide repertoire of genes linked to their antifungal capacities. Description: Gonzalez-Serrano, Francisco, et al. Amphibian skin bacteria contain a wide repertoire of genes linked to their antifungal capacities. ''World J Microbiol Biotechnol''. 2025 Feb 27; '''41''' (3):78
Domesticated rice alters the rhizosphere microbiome, reducing nitrogen fixation and increasing nitrous oxide emissions. Description: Chang, Jingjing, et al. Domesticated rice alters the rhizosphere microbiome, reducing nitrogen fixation and increasing nitrous oxide emissions. ''Nat Commun''. 2025 Feb 27; '''16''' (1):2038
Comprehensive genome annotation of Bombyx mori p50ma strain, a newly developed standard strain. Description: Lee, Jung, et al. Comprehensive genome annotation of Bombyx mori p50ma strain, a newly developed standard strain. ''Sci Data''. 2025 Feb 28; '''12''' (1):359
Proteomic analyses reveal the key role of gene co-option in the evolution of the scaly-foot snail scleritome. Description: Wong, Wai Chuen, et al. Proteomic analyses reveal the key role of gene co-option in the evolution of the scaly-foot snail scleritome. ''Commun Biol''. 2025 Feb 28; '''8''' (1):337
An organ-specific transcriptome atlas of Curcuma wenyujin: MicroRNAs, phasiRNAs, and metabolic pathways. Description: Ma, Xiaoxia, et al. An organ-specific transcriptome atlas of Curcuma wenyujin: MicroRNAs, phasiRNAs, and metabolic pathways. ''Plant Genome''. 2025 Mar; '''18''' (1):e20564
Chromosome-level genome assembly of Iodes seguinii and its metabonomic implications for rheumatoid arthritis treatment. Description: Gong, Xun, et al. Chromosome-level genome assembly of Iodes seguinii and its metabonomic implications for rheumatoid arthritis treatment. ''Plant Genome''. 2025 Mar; '''18''' (1):e20534
Culture-Independent Species-Level Taxonomic and Functional Characterisation of Bacteroides, the Core Bacterial Genus Within Reptile Guts. Description: Hoffbeck, Carmen, et al. Culture-Independent Species-Level Taxonomic and Functional Characterisation of Bacteroides, the Core Bacterial Genus Within Reptile Guts. ''Mol Ecol''. 2025 Mar; '''34''' (6):e17685
Discovering Hidden Archaeal and Bacterial Lipid Producers in a Euxinic Marine System. Description: Boukhchtaber, Dina Castillo, et al. Discovering Hidden Archaeal and Bacterial Lipid Producers in a Euxinic Marine System. ''Environ Microbiol''. 2025 Mar; '''27''' (3):e70054
Genome of root celery and population genomic analysis reveal the complex breeding history of celery. Description: Lai, Enhui, et al. Genome of root celery and population genomic analysis reveal the complex breeding history of celery. ''Plant Biotechnol J''. 2025 Mar; '''23''' (3):946-959
Gut Microbiome and Metabolome Changes in Chronic Low Back Pain Patients With Vertebral Bone Marrow Lesions. Description: Li, Wentian, et al. Gut Microbiome and Metabolome Changes in Chronic Low Back Pain Patients With Vertebral Bone Marrow Lesions. ''JOR Spine''. 2025 Mar; '''8''' (1):e70042
Microbial dysbiosis with tryptophan metabolites alteration in lower respiratory tract is associated with clinical responses to anti-PD-1 immunotherapy in advanced non-small cell lung cancer. Description: Chen, Xiang-Xiang, et al. Microbial dysbiosis with tryptophan metabolites alteration in lower respiratory tract is associated with clinical responses to anti-PD-1 immunotherapy in advanced non-small cell lung cancer. ''Cancer Immunol Immunother''. 2025 Mar 8; '''74''' (4):140
Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stress. Description: Hatano, Kaito, et al. Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stress. ''Data Brief''. 2025 Apr; '''59''': 111341
Quantitative insights into the efficacy of genome-resolved surveys of microbial communities through ribosomal protein phylogeography and EcoPhylo. Description: Schechter, Matthew S, et al. Quantitative insights into the efficacy of genome-resolved surveys of microbial communities through ribosomal protein phylogeography and EcoPhylo. ''bioRxiv''. 2025 Apr 23;
Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria. Description: Arzamasov, Aleksandr A, et al. Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria. ''bioRxiv''. 2025 May 17;
Effects of intergenerational transmission of small intestinal bacteria cultured from stunted Bangladeshi children with enteropathy. Description: Pruss, Kali M, et al. Effects of intergenerational transmission of small intestinal bacteria cultured from stunted Bangladeshi children with enteropathy. ''bioRxiv''. 2025 Nov 22;
Gut microbiome shifts in adolescents after sleeve gastrectomy with increased oral-associated taxa and pro-inflammatory potential. Description: Akagbosu, Cynthia O, et al. Gut microbiome shifts in adolescents after sleeve gastrectomy with increased oral-associated taxa and pro-inflammatory potential. ''Gut Microbes''. 2025 Dec; '''17''' (1):2467833
Short-term antiretroviral therapy may not correct the dysregulations of plasma virome and cytokines induced by HIV-1 infection. Description: Ma, Yingying, et al. Short-term antiretroviral therapy may not correct the dysregulations of plasma virome and cytokines induced by HIV-1 infection. ''Virulence''. 2025 Dec; '''16''' (1):2467168